RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 CCDC136Q96JN2 1154 aa4.28□□□□□ -1.72
VIM-210ENST00000637053 SUSD3Q96L08 255 aa4.28□□□□□ -1.72
VIM-210ENST00000637053 LPIN3Q9BQK8 851 aa4.28□□□□□ -1.72
VIM-210ENST00000637053 KRTAP17-1Q9BYP8 105 aa4.28□□□□□ -1.72
VIM-210ENST00000637053 KRTAP4-5Q9BYR2 181 aa4.28□□□□□ -1.72
VIM-210ENST00000637053 SERTM1A2A2V5 107 aa4.27□□□□□ -1.73
VIM-210ENST00000637053 BACH1O14867 736 aa4.27□□□□□ -1.73
VIM-210ENST00000637053 CCDC27Q2M243 656 aa4.27□□□□□ -1.73
VIM-210ENST00000637053 POTEAQ6S8J7 498 aa4.27□□□□□ -1.73
VIM-210ENST00000637053 ZDHHC13Q8IUH4 622 aa4.27□□□□□ -1.73
VIM-210ENST00000637053 GSX2Q9BZM3 304 aa4.27□□□□□ -1.73
VIM-210ENST00000637053 AKTIPQ9H8T0 292 aa4.27□□□□□ -1.73
VIM-210ENST00000637053 ADGRE2Q9UHX3 823 aa4.27□□□□□ -1.73
VIM-210ENST00000637053 HCN4Q9Y3Q4 1203 aa4.27□□□□□ -1.73
VIM-210ENST00000637053 A0A0U1RQG5 324 aaPredicted RBP4.26□□□□□ -1.73
VIM-210ENST00000637053 ZBTB42B2RXF5 422 aa4.26□□□□□ -1.73
VIM-210ENST00000637053 PIK3CDO00329 1044 aa4.26□□□□□ -1.73
VIM-210ENST00000637053 IGLV1-40P01703 118 aa4.26□□□□□ -1.73
VIM-210ENST00000637053 CPB1P15086 417 aa4.26□□□□□ -1.73
VIM-210ENST00000637053 ZEB1P37275 1124 aaPredicted RBP4.26□□□□□ -1.73
VIM-210ENST00000637053 VAC14Q08AM6 782 aa4.26□□□□□ -1.73
VIM-210ENST00000637053 PERM1Q5SV97 790 aa4.26□□□□□ -1.73
VIM-210ENST00000637053 C1orf53Q5VUE5 145 aa4.26□□□□□ -1.73
VIM-210ENST00000637053 OGFOD2Q6N063 350 aa4.26□□□□□ -1.73
VIM-210ENST00000637053 FAM35AQ86V20 835 aa4.26□□□□□ -1.73
VIM-210ENST00000637053 TMEM130Q8N3G9 435 aa4.26□□□□□ -1.73
VIM-210ENST00000637053 NAP1L5Q96NT1 182 aaPredicted RBP4.26□□□□□ -1.73
VIM-210ENST00000637053 PHACTR1Q9C0D0 580 aa4.26□□□□□ -1.73
VIM-210ENST00000637053 PRDM16Q9HAZ2 1276 aa4.26□□□□□ -1.73
VIM-210ENST00000637053 F8W735 103 aaPredicted RBP4.25□□□□□ -1.73
VIM-210ENST00000637053 GRNP28799 593 aaKnown RBP4.25□□□□□ -1.73
VIM-210ENST00000637053 Q6ZS46 218 aa4.25□□□□□ -1.73
VIM-210ENST00000637053 BTLAQ7Z6A9 289 aa4.25□□□□□ -1.73
VIM-210ENST00000637053 WFDC8Q8IUA0 241 aa4.25□□□□□ -1.73
VIM-210ENST00000637053 IL27Q8NEV9 243 aa4.25□□□□□ -1.73
VIM-210ENST00000637053 ANKIB1Q9P2G1 1089 aa4.25□□□□□ -1.73
VIM-210ENST00000637053 RAXQ9Y2V3 346 aa4.25□□□□□ -1.73
VIM-210ENST00000637053 NFKB1P19838 968 aa4.24□□□□□ -1.73
VIM-210ENST00000637053 HIRAP54198 1017 aaPredicted RBP4.24□□□□□ -1.73
VIM-210ENST00000637053 GTF2IP78347 998 aa4.24□□□□□ -1.73
VIM-210ENST00000637053 DTX1Q86Y01 620 aa4.24□□□□□ -1.73
VIM-210ENST00000637053 AGGF1Q8N302 714 aaeCLIP4.24□□□□□ -1.73
VIM-210ENST00000637053 ZNF526Q8TF50 670 aaPredicted RBP4.24□□□□□ -1.73
VIM-210ENST00000637053 UBL7Q96S82 380 aaPredicted RBP4.24□□□□□ -1.73
VIM-210ENST00000637053 TSPAN10Q9H1Z9 355 aaPredicted RBP4.24□□□□□ -1.73
VIM-210ENST00000637053 FRRS1LQ9P0K9 344 aa4.24□□□□□ -1.73
VIM-210ENST00000637053 PRR19A6NJB7 356 aa4.23□□□□□ -1.73
VIM-210ENST00000637053 C8AP07357 584 aa4.23□□□□□ -1.73
VIM-210ENST00000637053 NCLP19338 710 aaKnown RBP4.23□□□□□ -1.73
VIM-210ENST00000637053 CANXP27824 592 aaKnown RBP4.23□□□□□ -1.73
VIM-210ENST00000637053 TEX2Q8IWB9 1127 aa4.23□□□□□ -1.73
VIM-210ENST00000637053 EFCC1Q9HA90 598 aa4.23□□□□□ -1.73
VIM-210ENST00000637053 ZFATQ9P243 1243 aa4.23□□□□□ -1.73
VIM-210ENST00000637053 PTCD1O75127 700 aaKnown RBP4.22□□□□□ -1.73
VIM-210ENST00000637053 WNT11O96014 354 aa4.22□□□□□ -1.73
VIM-210ENST00000637053 PSMA6P60900 246 aaKnown RBP4.22□□□□□ -1.73
VIM-210ENST00000637053 SETQ01105 290 aaPredicted RBP4.22□□□□□ -1.73
VIM-210ENST00000637053 MLLT1Q03111 559 aaPredicted RBP4.22□□□□□ -1.73
VIM-210ENST00000637053 FLIIQ13045 1269 aa4.22□□□□□ -1.73
VIM-210ENST00000637053 AAMPQ13685 434 aa4.22□□□□□ -1.73
VIM-210ENST00000637053 CCINQ13939 588 aa4.22□□□□□ -1.73
VIM-210ENST00000637053 ARMC10Q8N2F6 343 aa4.22□□□□□ -1.73
VIM-210ENST00000637053 RETREG2Q8NC44 543 aa4.22□□□□□ -1.73
VIM-210ENST00000637053 TTC9Q92623 222 aa4.22□□□□□ -1.73
VIM-210ENST00000637053 MRPL18Q9H0U6 180 aaKnown RBP4.22□□□□□ -1.73
VIM-210ENST00000637053 STOML1Q9UBI4 398 aa4.22□□□□□ -1.73
VIM-210ENST00000637053 AMOTL2Q9Y2J4 779 aa4.22□□□□□ -1.73
VIM-210ENST00000637053 CADPSQ9ULU8 1353 aa4.22□□□□□ -1.73
VIM-210ENST00000637053 A6NJR5 290 aa4.21□□□□□ -1.74
VIM-210ENST00000637053 GSC2O15499 205 aa4.21□□□□□ -1.74
VIM-210ENST00000637053 PSME1Q06323 249 aa4.21□□□□□ -1.74
VIM-210ENST00000637053 EML3Q32P44 896 aa4.21□□□□□ -1.74
VIM-210ENST00000637053 INTS5Q6P9B9 1019 aaKnown RBP4.21□□□□□ -1.74
VIM-210ENST00000637053 ELMSAN1Q6PJG2 1045 aa4.21□□□□□ -1.74
VIM-210ENST00000637053 ABI1Q8IZP0 508 aa4.21□□□□□ -1.74
VIM-210ENST00000637053 TRPM4Q8TD43 1214 aa4.21□□□□□ -1.74
VIM-210ENST00000637053 PNMA5Q96PV4 448 aa4.21□□□□□ -1.74
VIM-210ENST00000637053 PLCD4Q9BRC7 762 aa4.21□□□□□ -1.74
VIM-210ENST00000637053 SMG9Q9H0W8 520 aaKnown RBP4.21□□□□□ -1.74
VIM-210ENST00000637053 DMGDHQ9UI17 866 aaKnown RBP4.21□□□□□ -1.74
VIM-210ENST00000637053 NOD1Q9Y239 953 aa4.21□□□□□ -1.74
VIM-210ENST00000637053 KRTAP9-7A8MTY7 169 aa4.2□□□□□ -1.74
VIM-210ENST00000637053 ZBTB7BO15156 539 aaPredicted RBP4.2□□□□□ -1.74
VIM-210ENST00000637053 C21orf2O43822 256 aa4.2□□□□□ -1.74
VIM-210ENST00000637053 MAP3K6O95382 1288 aa4.2□□□□□ -1.74
VIM-210ENST00000637053 GLB1P16278 677 aa4.2□□□□□ -1.74
VIM-210ENST00000637053 NFIAQ12857 509 aa4.2□□□□□ -1.74
VIM-210ENST00000637053 SETDB1Q15047 1291 aa4.2□□□□□ -1.74
VIM-210ENST00000637053 ALDH16A1Q8IZ83 802 aa4.2□□□□□ -1.74
VIM-210ENST00000637053 POU5F2Q8N7G0 328 aa4.2□□□□□ -1.74
VIM-210ENST00000637053 CLUAP1Q96AJ1 413 aa4.2□□□□□ -1.74
VIM-210ENST00000637053 C7orf69Q9H7B7 122 aa4.2□□□□□ -1.74
VIM-210ENST00000637053 KIAA1024Q9UPX6 916 aa4.2□□□□□ -1.74
VIM-210ENST00000637053 BCS1LQ9Y276 419 aa4.2□□□□□ -1.74
VIM-210ENST00000637053 MAFGO15525 162 aa4.19□□□□□ -1.74
VIM-210ENST00000637053 PTMSP20962 102 aa4.19□□□□□ -1.74
VIM-210ENST00000637053 TARSP26639 723 aaKnown RBP4.19□□□□□ -1.74
VIM-210ENST00000637053 NCOA4Q13772 614 aa4.19□□□□□ -1.74
VIM-210ENST00000637053 HFE2Q6ZVN8 426 aa4.19□□□□□ -1.74
VIM-210ENST00000637053 DHX32Q7L7V1 743 aaKnown RBP4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 258 ms