RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 TUBGCP6Q96RT7 1819 aa13.91□□□□□ -0.18
CLN6-217ENST00000636964 IGSF3O75054 1194 aa13.9□□□□□ -0.18
CLN6-217ENST00000636964 CHMP5Q9NZZ3 219 aa13.9□□□□□ -0.18
CLN6-217ENST00000636964 MAP3K15Q6ZN16 1313 aa13.9□□□□□ -0.18
CLN6-217ENST00000636964 NUP188Q5SRE5 1749 aa13.9□□□□□ -0.18
CLN6-217ENST00000636964 KCNQ4P56696 695 aa13.9□□□□□ -0.18
CLN6-217ENST00000636964 FAM182BQ5T319 152 aa13.9□□□□□ -0.18
CLN6-217ENST00000636964 BARGINQ6ZT62 677 aa13.9□□□□□ -0.18
CLN6-217ENST00000636964 USP42Q9H9J4 1324 aaKnown RBP13.9□□□□□ -0.18
CLN6-217ENST00000636964 GIGYF2Q6Y7W6 1299 aaKnown RBP13.9□□□□□ -0.18
CLN6-217ENST00000636964 NDUFB9Q9Y6M9 179 aa13.9□□□□□ -0.18
CLN6-217ENST00000636964 WNK3Q9BYP7 1800 aa13.89□□□□□ -0.19
CLN6-217ENST00000636964 LRRC24Q50LG9 513 aa13.89□□□□□ -0.19
CLN6-217ENST00000636964 DZIP3Q86Y13 1208 aaKnown RBP13.89□□□□□ -0.19
CLN6-217ENST00000636964 PALD1Q9ULE6 856 aa13.89□□□□□ -0.19
CLN6-217ENST00000636964 LOC102724428A0A0B4J2F2 783 aa13.89□□□□□ -0.19
CLN6-217ENST00000636964 SIK1P57059 783 aa13.89□□□□□ -0.19
CLN6-217ENST00000636964 EDC3Q96F86 508 aaKnown RBP13.89□□□□□ -0.19
CLN6-217ENST00000636964 JCADQ9P266 1359 aa13.89□□□□□ -0.19
CLN6-217ENST00000636964 FAM177BA6PVY3 158 aa13.88□□□□□ -0.19
CLN6-217ENST00000636964 RABEP1Q15276 862 aa13.88□□□□□ -0.19
CLN6-217ENST00000636964 TNNI3KQ59H18 835 aa13.88□□□□□ -0.19
CLN6-217ENST00000636964 PTF1AQ7RTS3 328 aa13.88□□□□□ -0.19
CLN6-217ENST00000636964 PUS3Q9BZE2 481 aaKnown RBP13.88□□□□□ -0.19
CLN6-217ENST00000636964 DBNLQ9UJU6 430 aaKnown RBP13.88□□□□□ -0.19
CLN6-217ENST00000636964 FPGT-TNNI3KV9GXZ4 949 aa13.88□□□□□ -0.19
CLN6-217ENST00000636964 BCL9LQ86UU0 1499 aa13.88□□□□□ -0.19
CLN6-217ENST00000636964 ITPK1Q13572 414 aa13.88□□□□□ -0.19
CLN6-217ENST00000636964 K7ELQ4 463 aaPredicted RBP13.87□□□□□ -0.19
CLN6-217ENST00000636964 NEUROD6Q96NK8 337 aa13.87□□□□□ -0.19
CLN6-217ENST00000636964 DBNDD2Q9BQY9 259 aa13.87□□□□□ -0.19
CLN6-217ENST00000636964 USP21Q9UK80 565 aa13.87□□□□□ -0.19
CLN6-217ENST00000636964 COL15A1P39059 1388 aa13.87□□□□□ -0.19
CLN6-217ENST00000636964 CRKLP46109 303 aaKnown RBP13.87□□□□□ -0.19
CLN6-217ENST00000636964 TIMM10P62072 90 aa13.87□□□□□ -0.19
CLN6-217ENST00000636964 ATG9AQ7Z3C6 839 aa13.87□□□□□ -0.19
CLN6-217ENST00000636964 DIAPH3Q9NSV4 1193 aa13.87□□□□□ -0.19
CLN6-217ENST00000636964 AK9Q5TCS8 1911 aa13.87□□□□□ -0.19
CLN6-217ENST00000636964 LRP6O75581 1613 aa13.87□□□□□ -0.19
CLN6-217ENST00000636964 INTS5Q6P9B9 1019 aaKnown RBP13.87□□□□□ -0.19
CLN6-217ENST00000636964 NLRP10Q86W26 655 aa13.87□□□□□ -0.19
CLN6-217ENST00000636964 TJP1Q07157 1748 aa13.86□□□□□ -0.19
CLN6-217ENST00000636964 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.86□□□□□ -0.19
CLN6-217ENST00000636964 PATL2C9JE40 543 aaKnown RBP13.86□□□□□ -0.19
CLN6-217ENST00000636964 SGSM2O43147 1006 aa13.86□□□□□ -0.19
CLN6-217ENST00000636964 VPS72Q15906 364 aa13.86□□□□□ -0.19
CLN6-217ENST00000636964 IL6STP40189 918 aaPredicted RBP13.86□□□□□ -0.19
CLN6-217ENST00000636964 TRIM28Q13263 835 aaKnown RBP13.86□□□□□ -0.19
CLN6-217ENST00000636964 ZBTB38Q8NAP3 1195 aaPredicted RBP13.86□□□□□ -0.19
CLN6-217ENST00000636964 PCCAP05165 728 aaPredicted RBP13.85□□□□□ -0.19
CLN6-217ENST00000636964 CCDC57Q2TAC2 916 aa13.85□□□□□ -0.19
CLN6-217ENST00000636964 EVI5LQ96CN4 794 aa13.85□□□□□ -0.19
CLN6-217ENST00000636964 CCDC87Q9NVE4 849 aa13.85□□□□□ -0.19
CLN6-217ENST00000636964 TRMT112Q9UI30 125 aaKnown RBP13.85□□□□□ -0.19
CLN6-217ENST00000636964 PALLDQ8WX93 1383 aa13.85□□□□□ -0.19
CLN6-217ENST00000636964 NEK4P51957 841 aa13.85□□□□□ -0.19
CLN6-217ENST00000636964 NWD2Q9ULI1 1742 aa13.85□□□□□ -0.19
CLN6-217ENST00000636964 MEX3CQ5U5Q3 659 aaKnown RBP13.85□□□□□ -0.19
CLN6-217ENST00000636964 SMIM5Q71RC9 77 aa13.85□□□□□ -0.19
CLN6-217ENST00000636964 FAM227BQ96M60 508 aa13.85□□□□□ -0.19
CLN6-217ENST00000636964 MCCP23508 829 aa13.84□□□□□ -0.19
CLN6-217ENST00000636964 NOL8Q76FK4 1167 aaKnown RBP13.84□□□□□ -0.19
CLN6-217ENST00000636964 FNBP4Q8N3X1 1017 aaPredicted RBP13.84□□□□□ -0.19
CLN6-217ENST00000636964 CERKQ8TCT0 537 aa13.84□□□□□ -0.19
CLN6-217ENST00000636964 TNPO1Q92973 898 aaKnown RBP13.84□□□□□ -0.19
CLN6-217ENST00000636964 DNAJC2Q99543 621 aaKnown RBP13.84□□□□□ -0.19
CLN6-217ENST00000636964 FSD1Q9BTV5 496 aa13.84□□□□□ -0.19
CLN6-217ENST00000636964 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.84□□□□□ -0.19
CLN6-217ENST00000636964 EYA2O00167 538 aa13.84□□□□□ -0.19
CLN6-217ENST00000636964 EIF5P55010 431 aaKnown RBP13.84□□□□□ -0.19
CLN6-217ENST00000636964 CHGBP05060 677 aa13.84□□□□□ -0.19
CLN6-217ENST00000636964 HSPA1LP34931 641 aa13.84□□□□□ -0.19
CLN6-217ENST00000636964 UPF3BQ9BZI7 483 aaKnown RBP13.84□□□□□ -0.19
CLN6-217ENST00000636964 UBN2Q6ZU65 1347 aa13.83□□□□□ -0.2
CLN6-217ENST00000636964 IRS4O14654 1257 aaPredicted RBP13.83□□□□□ -0.2
CLN6-217ENST00000636964 ST18O60284 1047 aa13.83□□□□□ -0.2
CLN6-217ENST00000636964 OFD1O75665 1012 aa13.83□□□□□ -0.2
CLN6-217ENST00000636964 ADRA2BP18089 450 aa13.83□□□□□ -0.2
CLN6-217ENST00000636964 IL15P40933 162 aaPredicted RBP13.83□□□□□ -0.2
CLN6-217ENST00000636964 PTH1RQ03431 593 aa13.83□□□□□ -0.2
CLN6-217ENST00000636964 HSP90AB3PQ58FF7 597 aa13.83□□□□□ -0.2
CLN6-217ENST00000636964 TMED8Q6PL24 325 aaPredicted RBP13.83□□□□□ -0.2
CLN6-217ENST00000636964 TRIM44Q96DX7 344 aaPredicted RBP13.83□□□□□ -0.2
CLN6-217ENST00000636964 LSG1Q9H089 658 aaKnown RBP13.83□□□□□ -0.2
CLN6-217ENST00000636964 DDX11L8A8MPP1 907 aa13.82□□□□□ -0.2
CLN6-217ENST00000636964 NMIQ13287 307 aaPredicted RBP13.82□□□□□ -0.2
CLN6-217ENST00000636964 GREM2Q9H772 168 aa13.82□□□□□ -0.2
CLN6-217ENST00000636964 IFIT5Q13325 482 aaKnown RBP13.82□□□□□ -0.2
CLN6-217ENST00000636964 PPP1R9BQ96SB3 815 aa13.82□□□□□ -0.2
CLN6-217ENST00000636964 ZHX1Q9UKY1 873 aaPredicted RBP13.82□□□□□ -0.2
CLN6-217ENST00000636964 ISY1Q9ULR0 285 aaKnown RBP13.82□□□□□ -0.2
CLN6-217ENST00000636964 ERVV-1B6SEH8 477 aa13.81□□□□□ -0.2
CLN6-217ENST00000636964 ATP5JP18859 108 aa13.81□□□□□ -0.2
CLN6-217ENST00000636964 TTLL11Q8NHH1 800 aa13.81□□□□□ -0.2
CLN6-217ENST00000636964 RUFY2Q8WXA3 655 aa13.81□□□□□ -0.2
CLN6-217ENST00000636964 A0A0D9SFI3 127 aa13.81□□□□□ -0.2
CLN6-217ENST00000636964 HCLS1P14317 486 aaPredicted RBP13.81□□□□□ -0.2
CLN6-217ENST00000636964 ITGA6P23229 1130 aa13.81□□□□□ -0.2
CLN6-217ENST00000636964 HSPA4P34932 840 aa13.81□□□□□ -0.2
CLN6-217ENST00000636964 DDX46Q7L014 1031 aaKnown RBP13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms