RNA–Protein interactions for RNA: ENST00000629293.1

LINC00550-201, long intergenic non-protein coding RNA 550, humanhuman

TSL 1 (best) BASIC

Gene LINC00550, Length 3,434 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00550-201ENST00000629293 UBR3Q6ZT12 1888 aa6.41□□□□□ -1.38
LINC00550-201ENST00000629293 U2SURPO15042 1029 aaKnown RBP6.41□□□□□ -1.38
LINC00550-201ENST00000629293 COL13A1Q5TAT6 717 aaPredicted RBP6.41□□□□□ -1.38
LINC00550-201ENST00000629293 PBXIP1Q96AQ6 731 aa6.41□□□□□ -1.38
LINC00550-201ENST00000629293 CALR3Q96L12 384 aaKnown RBP6.41□□□□□ -1.38
LINC00550-201ENST00000629293 TSKSQ9UJT2 592 aa6.41□□□□□ -1.38
LINC00550-201ENST00000629293 ZBTB1Q9Y2K1 713 aa6.41□□□□□ -1.38
LINC00550-201ENST00000629293 MAP2P11137 1827 aaKnown RBP6.41□□□□□ -1.38
LINC00550-201ENST00000629293 KDM6AO15550 1401 aaPredicted RBP6.41□□□□□ -1.38
LINC00550-201ENST00000629293 USP17L8P0C7I0 530 aa6.41□□□□□ -1.38
LINC00550-201ENST00000629293 KCNA3P22001 575 aa6.41□□□□□ -1.38
LINC00550-201ENST00000629293 DIXDC1Q155Q3 683 aa6.41□□□□□ -1.38
LINC00550-201ENST00000629293 KCPQ6ZWJ8 1503 aa6.41□□□□□ -1.38
LINC00550-201ENST00000629293 N4BP2Q86UW6 1770 aaPredicted RBP6.41□□□□□ -1.38
LINC00550-201ENST00000629293 ABL2P42684 1182 aa6.41□□□□□ -1.38
LINC00550-201ENST00000629293 NFIXQ14938 502 aa6.41□□□□□ -1.38
LINC00550-201ENST00000629293 TTC5Q8N0Z6 440 aa6.41□□□□□ -1.38
LINC00550-201ENST00000629293 KIF20BQ96Q89 1820 aa6.41□□□□□ -1.38
LINC00550-201ENST00000629293 KDRP35968 1356 aa6.4□□□□□ -1.38
LINC00550-201ENST00000629293 G3V3G9 751 aa6.4□□□□□ -1.38
LINC00550-201ENST00000629293 ALG2Q9H553 416 aa6.4□□□□□ -1.38
LINC00550-201ENST00000629293 C10orf71Q711Q0 1435 aa6.4□□□□□ -1.38
LINC00550-201ENST00000629293 POLRMTO00411 1230 aaKnown RBP6.4□□□□□ -1.39
LINC00550-201ENST00000629293 SERPINB2P05120 415 aa6.4□□□□□ -1.39
LINC00550-201ENST00000629293 INTS5Q6P9B9 1019 aaKnown RBP6.4□□□□□ -1.39
LINC00550-201ENST00000629293 C2CD5Q86YS7 1000 aa6.4□□□□□ -1.39
LINC00550-201ENST00000629293 ZNF710Q8N1W2 664 aa6.4□□□□□ -1.39
LINC00550-201ENST00000629293 DNAJC5GQ8N7S2 189 aa6.4□□□□□ -1.39
LINC00550-201ENST00000629293 BRD1O95696 1058 aa6.4□□□□□ -1.39
LINC00550-201ENST00000629293 PIP4K2AP48426 406 aaPredicted RBP6.4□□□□□ -1.39
LINC00550-201ENST00000629293 TNS4Q8IZW8 715 aa6.4□□□□□ -1.39
LINC00550-201ENST00000629293 RBM46Q8TBY0 533 aaKnown RBP6.4□□□□□ -1.39
LINC00550-201ENST00000629293 ZDHHC16Q969W1 377 aa6.4□□□□□ -1.39
LINC00550-201ENST00000629293 SLC52A2Q9HAB3 445 aa6.4□□□□□ -1.39
LINC00550-201ENST00000629293 PCDHGC3Q9UN70 934 aa6.4□□□□□ -1.39
LINC00550-201ENST00000629293 FAM177BA6PVY3 158 aa6.39□□□□□ -1.39
LINC00550-201ENST00000629293 TTLL6Q8N841 843 aa6.39□□□□□ -1.39
LINC00550-201ENST00000629293 KHSRPQ92945 711 aaKnown RBP eCLIP6.39□□□□□ -1.39
LINC00550-201ENST00000629293 KLRG1Q96E93 195 aa6.39□□□□□ -1.39
LINC00550-201ENST00000629293 MYH14Q7Z406 1995 aaKnown RBP6.39□□□□□ -1.39
LINC00550-201ENST00000629293 H0YIN7 160 aa6.39□□□□□ -1.39
LINC00550-201ENST00000629293 C21orf2O43822 256 aa6.39□□□□□ -1.39
LINC00550-201ENST00000629293 KCNA1Q09470 495 aa6.39□□□□□ -1.39
LINC00550-201ENST00000629293 TEFQ10587 303 aa6.39□□□□□ -1.39
LINC00550-201ENST00000629293 AKAP4Q5JQC9 854 aa6.39□□□□□ -1.39
LINC00550-201ENST00000629293 SMC1BQ8NDV3 1235 aa6.39□□□□□ -1.39
LINC00550-201ENST00000629293 RNMTO43148 476 aaKnown RBP6.38□□□□□ -1.39
LINC00550-201ENST00000629293 CYP19A1P11511 503 aaPredicted RBP6.38□□□□□ -1.39
LINC00550-201ENST00000629293 VEGFAP15692 232 aaPredicted RBP6.38□□□□□ -1.39
LINC00550-201ENST00000629293 PRPF38BQ5VTL8 546 aaKnown RBP6.38□□□□□ -1.39
LINC00550-201ENST00000629293 USTQ9Y2C2 406 aa6.38□□□□□ -1.39
LINC00550-201ENST00000629293 LMNB1P20700 586 aa6.38□□□□□ -1.39
LINC00550-201ENST00000629293 IL13P35225 146 aa6.38□□□□□ -1.39
LINC00550-201ENST00000629293 MTHFSDQ2M296 383 aaKnown RBP6.38□□□□□ -1.39
LINC00550-201ENST00000629293 HDGFL1Q5TGJ6 251 aa6.38□□□□□ -1.39
LINC00550-201ENST00000629293 MKRN1Q9UHC7 482 aaKnown RBP6.38□□□□□ -1.39
LINC00550-201ENST00000629293 COL24A1Q17RW2 1714 aa6.38□□□□□ -1.39
LINC00550-201ENST00000629293 PKD1L3Q7Z443 1732 aa6.38□□□□□ -1.39
LINC00550-201ENST00000629293 STARD3NLO95772 234 aa6.38□□□□□ -1.39
LINC00550-201ENST00000629293 ERFEQ4G0M1 354 aa6.38□□□□□ -1.39
LINC00550-201ENST00000629293 TMEM134Q9H6X4 195 aa6.38□□□□□ -1.39
LINC00550-201ENST00000629293 NARFQ9UHQ1 456 aa6.38□□□□□ -1.39
LINC00550-201ENST00000629293 COL15A1P39059 1388 aa6.38□□□□□ -1.39
LINC00550-201ENST00000629293 PLEKHG2Q9H7P9 1386 aa6.38□□□□□ -1.39
LINC00550-201ENST00000629293 NCAPD2Q15021 1401 aa6.38□□□□□ -1.39
LINC00550-201ENST00000629293 POTEIP0CG38 1075 aa6.37□□□□□ -1.39
LINC00550-201ENST00000629293 HOXB3P14651 431 aaPredicted RBP6.37□□□□□ -1.39
LINC00550-201ENST00000629293 SOS1Q07889 1333 aaPredicted RBP6.37□□□□□ -1.39
LINC00550-201ENST00000629293 DIAPH1O60610 1272 aaKnown RBP6.37□□□□□ -1.39
LINC00550-201ENST00000629293 TM4SF1P30408 202 aa6.37□□□□□ -1.39
LINC00550-201ENST00000629293 FSTL1Q12841 308 aa6.37□□□□□ -1.39
LINC00550-201ENST00000629293 PPP1R12CQ9BZL4 782 aa6.37□□□□□ -1.39
LINC00550-201ENST00000629293 GLTPD2A6NH11 291 aa6.37□□□□□ -1.39
LINC00550-201ENST00000629293 A1BGP04217 495 aa6.37□□□□□ -1.39
LINC00550-201ENST00000629293 TBC1D9BQ66K14 1250 aa6.37□□□□□ -1.39
LINC00550-201ENST00000629293 EPS8L1Q8TE68 723 aa6.37□□□□□ -1.39
LINC00550-201ENST00000629293 ZNF496Q96IT1 587 aaPredicted RBP6.37□□□□□ -1.39
LINC00550-201ENST00000629293 KIF7Q2M1P5 1343 aa6.37□□□□□ -1.39
LINC00550-201ENST00000629293 CARMIL3Q8ND23 1372 aa6.37□□□□□ -1.39
LINC00550-201ENST00000629293 AP1G2O75843 785 aa6.36□□□□□ -1.39
LINC00550-201ENST00000629293 POTEJP0CG39 1038 aa6.36□□□□□ -1.39
LINC00550-201ENST00000629293 HSPA1AP0DMV8 641 aaKnown RBP6.36□□□□□ -1.39
LINC00550-201ENST00000629293 HSPA1BP0DMV9 641 aaKnown RBP6.36□□□□□ -1.39
LINC00550-201ENST00000629293 PRELPP51888 382 aa6.36□□□□□ -1.39
LINC00550-201ENST00000629293 GRM1Q13255 1194 aa6.36□□□□□ -1.39
LINC00550-201ENST00000629293 EAPPQ56P03 285 aaPredicted RBP6.36□□□□□ -1.39
LINC00550-201ENST00000629293 BCL2L12Q9HB09 334 aa6.36□□□□□ -1.39
LINC00550-201ENST00000629293 NFKBIEO00221 500 aa6.36□□□□□ -1.39
LINC00550-201ENST00000629293 NGEFQ8N5V2 710 aa6.36□□□□□ -1.39
LINC00550-201ENST00000629293 C4AP0C0L4 1744 aa6.36□□□□□ -1.39
LINC00550-201ENST00000629293 DDNO94850 711 aaPredicted RBP6.35□□□□□ -1.39
LINC00550-201ENST00000629293 GTF2E1P29083 439 aaPredicted RBP6.35□□□□□ -1.39
LINC00550-201ENST00000629293 CTDSPL2Q05D32 466 aa6.35□□□□□ -1.39
LINC00550-201ENST00000629293 CSPP1Q1MSJ5 1256 aa6.35□□□□□ -1.39
LINC00550-201ENST00000629293 CNBD1Q8NA66 436 aa6.35□□□□□ -1.39
LINC00550-201ENST00000629293 HLA-CQ95604 372 aa6.35□□□□□ -1.39
LINC00550-201ENST00000629293 SETDB2Q96T68 719 aa6.35□□□□□ -1.39
LINC00550-201ENST00000629293 NDUFB9Q9Y6M9 179 aa6.35□□□□□ -1.39
LINC00550-201ENST00000629293 TCERG1O14776 1098 aaKnown RBP6.35□□□□□ -1.39
LINC00550-201ENST00000629293 GABBR2O75899 941 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms