RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 RCAN3Q9UKA8 241 aa25.66■■□□□ 1.7
PTCD3-220ENST00000627371 CTSWP56202 376 aa25.65■■□□□ 1.7
PTCD3-220ENST00000627371 SBF1O95248 1867 aa25.65■■□□□ 1.7
PTCD3-220ENST00000627371 UTYO14607 1347 aa25.64■■□□□ 1.7
PTCD3-220ENST00000627371 C21orf2O43822 256 aa25.64■■□□□ 1.7
PTCD3-220ENST00000627371 CCDC152Q4G0S7 254 aa25.64■■□□□ 1.7
PTCD3-220ENST00000627371 C7orf43Q8WVR3 580 aa25.64■■□□□ 1.7
PTCD3-220ENST00000627371 COL4A1P02462 1669 aa25.64■■□□□ 1.69
PTCD3-220ENST00000627371 CCDC88AQ3V6T2 1871 aa25.64■■□□□ 1.69
PTCD3-220ENST00000627371 GRAPQ13588 217 aa25.63■■□□□ 1.69
PTCD3-220ENST00000627371 SOGA3Q5TF21 947 aa25.63■■□□□ 1.69
PTCD3-220ENST00000627371 GRAPLQ8TC17 118 aaPredicted RBP25.63■■□□□ 1.69
PTCD3-220ENST00000627371 SPEF2Q9C093 1822 aa25.63■■□□□ 1.69
PTCD3-220ENST00000627371 LRRC37AA6NMS7 1700 aa25.63■■□□□ 1.69
PTCD3-220ENST00000627371 TTLL11Q8NHH1 800 aa25.62■■□□□ 1.69
PTCD3-220ENST00000627371 ZNF219Q9P2Y4 722 aaPredicted RBP25.62■■□□□ 1.69
PTCD3-220ENST00000627371 TNNQ9UQP3 1299 aa25.62■■□□□ 1.69
PTCD3-220ENST00000627371 RTL9Q8NET4 1388 aa25.61■■□□□ 1.69
PTCD3-220ENST00000627371 PPEF1O14829 653 aaPredicted RBP25.61■■□□□ 1.69
PTCD3-220ENST00000627371 NBPF7P0C2Y1 421 aaPredicted RBP25.61■■□□□ 1.69
PTCD3-220ENST00000627371 INTS3Q68E01 1043 aaKnown RBP25.61■■□□□ 1.69
PTCD3-220ENST00000627371 ARHGAP27Q6ZUM4 889 aa25.61■■□□□ 1.69
PTCD3-220ENST00000627371 BBOX1O75936 387 aa25.6■■□□□ 1.69
PTCD3-220ENST00000627371 USP44Q9H0E7 712 aa25.6■■□□□ 1.69
PTCD3-220ENST00000627371 CCDC93Q567U6 631 aa25.59■■□□□ 1.69
PTCD3-220ENST00000627371 CLUAP1Q96AJ1 413 aa25.59■■□□□ 1.69
PTCD3-220ENST00000627371 CCDC85AQ96PX6 553 aaPredicted RBP25.59■■□□□ 1.69
PTCD3-220ENST00000627371 SNED1Q8TER0 1413 aa25.59■■□□□ 1.69
PTCD3-220ENST00000627371 CSF1RP07333 972 aa25.58■■□□□ 1.69
PTCD3-220ENST00000627371 FOXO4P98177 505 aa25.58■■□□□ 1.69
PTCD3-220ENST00000627371 CELF1Q92879 486 aaKnown RBP25.58■■□□□ 1.69
PTCD3-220ENST00000627371 SEC31BQ9NQW1 1179 aa25.58■■□□□ 1.69
PTCD3-220ENST00000627371 DICER1Q9UPY3 1922 aaKnown RBP25.57■■□□□ 1.68
PTCD3-220ENST00000627371 CC2D2BQ6DHV5 1058 aa25.57■■□□□ 1.68
PTCD3-220ENST00000627371 TMC4Q7Z404 712 aa25.57■■□□□ 1.68
PTCD3-220ENST00000627371 SUCLG2Q96I99 432 aa25.57■■□□□ 1.68
PTCD3-220ENST00000627371 GREM2Q9H772 168 aa25.57■■□□□ 1.68
PTCD3-220ENST00000627371 ATP6V0A2Q9Y487 856 aa25.57■■□□□ 1.68
PTCD3-220ENST00000627371 NFKBIEO00221 500 aa25.56■■□□□ 1.68
PTCD3-220ENST00000627371 EPHA10Q5JZY3 1008 aa25.56■■□□□ 1.68
PTCD3-220ENST00000627371 OLFM4Q6UX06 510 aa25.56■■□□□ 1.68
PTCD3-220ENST00000627371 FTSJ3Q8IY81 847 aaKnown RBP25.56■■□□□ 1.68
PTCD3-220ENST00000627371 DZIP1LQ8IYY4 767 aaKnown RBP25.56■■□□□ 1.68
PTCD3-220ENST00000627371 KAZALD1Q96I82 304 aa25.56■■□□□ 1.68
PTCD3-220ENST00000627371 RASSF7Q02833 373 aa25.55■■□□□ 1.68
PTCD3-220ENST00000627371 FAM161AQ3B820 660 aa25.55■■□□□ 1.68
PTCD3-220ENST00000627371 LTBP3Q9NS15 1303 aa25.55■■□□□ 1.68
PTCD3-220ENST00000627371 RPS8P62241 208 aaKnown RBP25.54■■□□□ 1.68
PTCD3-220ENST00000627371 GRIPAP1Q4V328 841 aa25.54■■□□□ 1.68
PTCD3-220ENST00000627371 SLC51AQ86UW1 340 aa25.54■■□□□ 1.68
PTCD3-220ENST00000627371 SP8Q8IXZ3 490 aa25.54■■□□□ 1.68
PTCD3-220ENST00000627371 RTKN2Q8IZC4 609 aa25.54■■□□□ 1.68
PTCD3-220ENST00000627371 TMEM57Q8N5G2 664 aa25.54■■□□□ 1.68
PTCD3-220ENST00000627371 CDC5LQ99459 802 aaKnown RBP25.54■■□□□ 1.68
PTCD3-220ENST00000627371 LMBR1LQ6UX01 489 aa25.53■■□□□ 1.68
PTCD3-220ENST00000627371 TMX4Q9H1E5 349 aaPredicted RBP25.53■■□□□ 1.68
PTCD3-220ENST00000627371 TAOK3Q9H2K8 898 aa25.53■■□□□ 1.68
PTCD3-220ENST00000627371 LTBP1Q14766 1721 aa25.53■■□□□ 1.68
PTCD3-220ENST00000627371 TIAM2Q8IVF5 1701 aa25.52■■□□□ 1.68
PTCD3-220ENST00000627371 UBTFL1P0CB47 393 aaPredicted RBP25.52■■□□□ 1.68
PTCD3-220ENST00000627371 RLBP1P12271 317 aa25.52■■□□□ 1.68
PTCD3-220ENST00000627371 ITGA6P23229 1130 aa25.52■■□□□ 1.68
PTCD3-220ENST00000627371 ANKRD18AQ8IVF6 992 aa25.52■■□□□ 1.68
PTCD3-220ENST00000627371 MEIS3Q99687 375 aa25.52■■□□□ 1.68
PTCD3-220ENST00000627371 BICC1Q9H694 974 aaKnown RBP25.52■■□□□ 1.68
PTCD3-220ENST00000627371 MS4A1P11836 297 aa25.51■■□□□ 1.67
PTCD3-220ENST00000627371 FKBP4Q02790 459 aaKnown RBP eCLIP25.51■■□□□ 1.67
PTCD3-220ENST00000627371 RABL6Q3YEC7 729 aaPredicted RBP25.51■■□□□ 1.67
PTCD3-220ENST00000627371 CHMP3Q9Y3E7 222 aa25.51■■□□□ 1.67
PTCD3-220ENST00000627371 A0A1B0GUL6 1792 aa25.5■■□□□ 1.67
PTCD3-220ENST00000627371 PSMD1Q99460 953 aa25.5■■□□□ 1.67
PTCD3-220ENST00000627371 HDAC5Q9UQL6 1122 aa25.5■■□□□ 1.67
PTCD3-220ENST00000627371 ANKRD18BA2A2Z9 1011 aa25.49■■□□□ 1.67
PTCD3-220ENST00000627371 GNAI3P08754 354 aa25.49■■□□□ 1.67
PTCD3-220ENST00000627371 IFIT5Q13325 482 aaKnown RBP25.49■■□□□ 1.67
PTCD3-220ENST00000627371 ANKRD44Q8N8A2 993 aa25.49■■□□□ 1.67
PTCD3-220ENST00000627371 DUOX1Q9NRD9 1551 aa25.48■■□□□ 1.67
PTCD3-220ENST00000627371 PLIN1O60240 522 aa25.48■■□□□ 1.67
PTCD3-220ENST00000627371 LMNB1P20700 586 aa25.48■■□□□ 1.67
PTCD3-220ENST00000627371 PRELPP51888 382 aa25.48■■□□□ 1.67
PTCD3-220ENST00000627371 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.48■■□□□ 1.67
PTCD3-220ENST00000627371 IGHMBP2P38935 993 aaKnown RBP25.47■■□□□ 1.67
PTCD3-220ENST00000627371 CCDC57Q2TAC2 916 aa25.47■■□□□ 1.67
PTCD3-220ENST00000627371 C9orf131Q5VYM1 1079 aa25.47■■□□□ 1.67
PTCD3-220ENST00000627371 ITPRIPQ8IWB1 547 aa25.47■■□□□ 1.67
PTCD3-220ENST00000627371 PANK1Q8TE04 598 aa25.47■■□□□ 1.67
PTCD3-220ENST00000627371 BSDC1Q9NW68 430 aaPredicted RBP25.47■■□□□ 1.67
PTCD3-220ENST00000627371 MPNDQ8N594 471 aa25.46■■□□□ 1.67
PTCD3-220ENST00000627371 RNF181Q9P0P0 153 aa25.46■■□□□ 1.67
PTCD3-220ENST00000627371 LRRFIP2Q9Y608 721 aaKnown RBP25.46■■□□□ 1.67
PTCD3-220ENST00000627371 DPP8Q6V1X1 898 aaPredicted RBP25.45■■□□□ 1.66
PTCD3-220ENST00000627371 YY1P25490 414 aa25.44■■□□□ 1.66
PTCD3-220ENST00000627371 MPHOSPH8Q99549 860 aa25.44■■□□□ 1.66
PTCD3-220ENST00000627371 RTFDC1Q9BY42 306 aaPredicted RBP25.44■■□□□ 1.66
PTCD3-220ENST00000627371 ZNF277Q9NRM2 450 aaPredicted RBP25.44■■□□□ 1.66
PTCD3-220ENST00000627371 GPSM2P81274 684 aa25.43■■□□□ 1.66
PTCD3-220ENST00000627371 NSFL1CQ9UNZ2 370 aaKnown RBP25.43■■□□□ 1.66
PTCD3-220ENST00000627371 IARSP41252 1262 aaKnown RBP25.42■■□□□ 1.66
PTCD3-220ENST00000627371 PDE3AQ14432 1141 aa25.42■■□□□ 1.66
PTCD3-220ENST00000627371 TAF7LQ5H9L4 462 aa25.42■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms