RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 PSMD1Q99460 953 aa6.65□□□□□ -1.34
SHMT1-211ENST00000618902 CWC25Q9NXE8 425 aaPredicted RBP6.65□□□□□ -1.34
SHMT1-211ENST00000618902 TRMT112Q9UI30 125 aaKnown RBP6.65□□□□□ -1.34
SHMT1-211ENST00000618902 PTPRCP08575 1304 aa6.65□□□□□ -1.35
SHMT1-211ENST00000618902 H7C1W4 665 aa6.64□□□□□ -1.35
SHMT1-211ENST00000618902 PLIN1O60240 522 aa6.64□□□□□ -1.35
SHMT1-211ENST00000618902 PCCAP05165 728 aaPredicted RBP6.64□□□□□ -1.35
SHMT1-211ENST00000618902 NEXNQ0ZGT2 675 aa6.64□□□□□ -1.35
SHMT1-211ENST00000618902 CCDC93Q567U6 631 aa6.64□□□□□ -1.35
SHMT1-211ENST00000618902 EPHA10Q5JZY3 1008 aa6.64□□□□□ -1.35
SHMT1-211ENST00000618902 SLC4A10Q6U841 1118 aa6.64□□□□□ -1.35
SHMT1-211ENST00000618902 OLFM4Q6UX06 510 aa6.64□□□□□ -1.35
SHMT1-211ENST00000618902 ARHGAP27Q6ZUM4 889 aa6.64□□□□□ -1.35
SHMT1-211ENST00000618902 ZBTB38Q8NAP3 1195 aaPredicted RBP6.64□□□□□ -1.35
SHMT1-211ENST00000618902 C7orf43Q8WVR3 580 aa6.64□□□□□ -1.35
SHMT1-211ENST00000618902 KAZALD1Q96I82 304 aa6.64□□□□□ -1.35
SHMT1-211ENST00000618902 ANP32EQ9BTT0 268 aa6.64□□□□□ -1.35
SHMT1-211ENST00000618902 GPBP1L1Q9HC44 474 aaPredicted RBP6.64□□□□□ -1.35
SHMT1-211ENST00000618902 ABCC4O15439 1325 aa6.64□□□□□ -1.35
SHMT1-211ENST00000618902 SH3TC1Q8TE82 1336 aa6.64□□□□□ -1.35
SHMT1-211ENST00000618902 DDX60Q8IY21 1712 aaKnown RBP6.64□□□□□ -1.35
SHMT1-211ENST00000618902 IRS4O14654 1257 aaPredicted RBP6.63□□□□□ -1.35
SHMT1-211ENST00000618902 ALDH1L1O75891 902 aa6.63□□□□□ -1.35
SHMT1-211ENST00000618902 ATXN8OSP0DMR3 200 aa6.63□□□□□ -1.35
SHMT1-211ENST00000618902 TAF1P21675 1872 aa6.63□□□□□ -1.35
SHMT1-211ENST00000618902 MMP14P50281 582 aa6.63□□□□□ -1.35
SHMT1-211ENST00000618902 LAMB2P55268 1798 aa6.63□□□□□ -1.35
SHMT1-211ENST00000618902 C20orf194Q5TEA3 1177 aa6.63□□□□□ -1.35
SHMT1-211ENST00000618902 PRPF40BQ6NWY9 871 aaKnown RBP6.63□□□□□ -1.35
SHMT1-211ENST00000618902 ATF7IPQ6VMQ6 1270 aa6.63□□□□□ -1.35
SHMT1-211ENST00000618902 UBE3BQ7Z3V4 1068 aa6.63□□□□□ -1.35
SHMT1-211ENST00000618902 SLX4Q8IY92 1834 aa6.63□□□□□ -1.35
SHMT1-211ENST00000618902 SUPT20HQ8NEM7 779 aa6.63□□□□□ -1.35
SHMT1-211ENST00000618902 ARHGAP45Q92619 1136 aa6.63□□□□□ -1.35
SHMT1-211ENST00000618902 RPGRQ92834 1020 aaKnown RBP6.63□□□□□ -1.35
SHMT1-211ENST00000618902 FRAT1Q92837 279 aaPredicted RBP6.63□□□□□ -1.35
SHMT1-211ENST00000618902 ZNF622Q969S3 477 aaKnown RBP eCLIP6.63□□□□□ -1.35
SHMT1-211ENST00000618902 CLUAP1Q96AJ1 413 aa6.63□□□□□ -1.35
SHMT1-211ENST00000618902 USP44Q9H0E7 712 aa6.63□□□□□ -1.35
SHMT1-211ENST00000618902 TAOK3Q9H2K8 898 aa6.63□□□□□ -1.35
SHMT1-211ENST00000618902 RCAN3Q9UKA8 241 aa6.63□□□□□ -1.35
SHMT1-211ENST00000618902 UTYO14607 1347 aa6.62□□□□□ -1.35
SHMT1-211ENST00000618902 KIF16BQ96L93 1317 aa6.62□□□□□ -1.35
SHMT1-211ENST00000618902 CDHR2Q9BYE9 1310 aa6.62□□□□□ -1.35
SHMT1-211ENST00000618902 GLTPD2A6NH11 291 aa6.62□□□□□ -1.35
SHMT1-211ENST00000618902 GRM8O00222 908 aa6.62□□□□□ -1.35
SHMT1-211ENST00000618902 NBPF7P0C2Y1 421 aaPredicted RBP6.62□□□□□ -1.35
SHMT1-211ENST00000618902 PRELPP51888 382 aa6.62□□□□□ -1.35
SHMT1-211ENST00000618902 FOXO4P98177 505 aa6.62□□□□□ -1.35
SHMT1-211ENST00000618902 FKBP4Q02790 459 aaKnown RBP eCLIP6.62□□□□□ -1.35
SHMT1-211ENST00000618902 FSTL1Q12841 308 aa6.62□□□□□ -1.35
SHMT1-211ENST00000618902 SF3B3Q15393 1217 aaKnown RBP6.62□□□□□ -1.35
SHMT1-211ENST00000618902 INTS3Q68E01 1043 aaKnown RBP6.62□□□□□ -1.35
SHMT1-211ENST00000618902 DDX46Q7L014 1031 aaKnown RBP6.62□□□□□ -1.35
SHMT1-211ENST00000618902 TMEM57Q8N5G2 664 aa6.62□□□□□ -1.35
SHMT1-211ENST00000618902 PANK1Q8TE04 598 aa6.62□□□□□ -1.35
SHMT1-211ENST00000618902 SUCLG2Q96I99 432 aa6.62□□□□□ -1.35
SHMT1-211ENST00000618902 MEIS3Q99687 375 aa6.62□□□□□ -1.35
SHMT1-211ENST00000618902 PLA2G12BQ9BX93 195 aa6.62□□□□□ -1.35
SHMT1-211ENST00000618902 API5Q9BZZ5 524 aaKnown RBP6.62□□□□□ -1.35
SHMT1-211ENST00000618902 SRCIN1Q9C0H9 1055 aa6.62□□□□□ -1.35
SHMT1-211ENST00000618902 SEC31BQ9NQW1 1179 aa6.62□□□□□ -1.35
SHMT1-211ENST00000618902 RBM19Q9Y4C8 960 aaKnown RBP6.62□□□□□ -1.35
SHMT1-211ENST00000618902 SNED1Q8TER0 1413 aa6.61□□□□□ -1.35
SHMT1-211ENST00000618902 IQCA1LA6NCM1 817 aa6.61□□□□□ -1.35
SHMT1-211ENST00000618902 TOMM70O94826 608 aa6.61□□□□□ -1.35
SHMT1-211ENST00000618902 VEGFAP15692 232 aaPredicted RBP6.61□□□□□ -1.35
SHMT1-211ENST00000618902 CTSWP56202 376 aa6.61□□□□□ -1.35
SHMT1-211ENST00000618902 C9orf131Q5VYM1 1079 aa6.61□□□□□ -1.35
SHMT1-211ENST00000618902 ZKSCAN2Q63HK3 967 aa6.61□□□□□ -1.35
SHMT1-211ENST00000618902 SP8Q8IXZ3 490 aa6.61□□□□□ -1.35
SHMT1-211ENST00000618902 ANKRD44Q8N8A2 993 aa6.61□□□□□ -1.35
SHMT1-211ENST00000618902 TTLL11Q8NHH1 800 aa6.61□□□□□ -1.35
SHMT1-211ENST00000618902 CELF1Q92879 486 aaKnown RBP6.61□□□□□ -1.35
SHMT1-211ENST00000618902 CCDC85AQ96PX6 553 aaPredicted RBP6.61□□□□□ -1.35
SHMT1-211ENST00000618902 RTFDC1Q9BY42 306 aaPredicted RBP6.61□□□□□ -1.35
SHMT1-211ENST00000618902 GREM2Q9H772 168 aa6.61□□□□□ -1.35
SHMT1-211ENST00000618902 ZNF219Q9P2Y4 722 aaPredicted RBP6.61□□□□□ -1.35
SHMT1-211ENST00000618902 HDAC5Q9UQL6 1122 aa6.61□□□□□ -1.35
SHMT1-211ENST00000618902 RTL9Q8NET4 1388 aa6.6□□□□□ -1.35
SHMT1-211ENST00000618902 NFKBIEO00221 500 aa6.6□□□□□ -1.35
SHMT1-211ENST00000618902 C21orf2O43822 256 aa6.6□□□□□ -1.35
SHMT1-211ENST00000618902 PDE8AO60658 829 aa6.6□□□□□ -1.35
SHMT1-211ENST00000618902 CSF1RP07333 972 aa6.6□□□□□ -1.35
SHMT1-211ENST00000618902 CCT4P50991 539 aaKnown RBP6.6□□□□□ -1.35
SHMT1-211ENST00000618902 C1QTNF8P60827 252 aa6.6□□□□□ -1.35
SHMT1-211ENST00000618902 GRAPQ13588 217 aa6.6□□□□□ -1.35
SHMT1-211ENST00000618902 FAM161AQ3B820 660 aa6.6□□□□□ -1.35
SHMT1-211ENST00000618902 CCDC152Q4G0S7 254 aa6.6□□□□□ -1.35
SHMT1-211ENST00000618902 C16orf71Q8IYS4 520 aaPredicted RBP6.6□□□□□ -1.35
SHMT1-211ENST00000618902 RBM46Q8TBY0 533 aaKnown RBP6.6□□□□□ -1.35
SHMT1-211ENST00000618902 GRAPLQ8TC17 118 aaPredicted RBP6.6□□□□□ -1.35
SHMT1-211ENST00000618902 JDP2Q8WYK2 163 aa6.6□□□□□ -1.35
SHMT1-211ENST00000618902 L3MBTL3Q96JM7 780 aaPredicted RBP6.6□□□□□ -1.35
SHMT1-211ENST00000618902 RNF181Q9P0P0 153 aa6.6□□□□□ -1.35
SHMT1-211ENST00000618902 ATP6V0A2Q9Y487 856 aa6.6□□□□□ -1.35
SHMT1-211ENST00000618902 SBF1O95248 1867 aa6.6□□□□□ -1.35
SHMT1-211ENST00000618902 FER1L6Q2WGJ9 1857 aa6.6□□□□□ -1.35
SHMT1-211ENST00000618902 DICER1Q9UPY3 1922 aaKnown RBP6.59□□□□□ -1.35
SHMT1-211ENST00000618902 WTIPA6NIX2 430 aaPredicted RBP6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms