RNA–Protein interactions for RNA: ENST00000612404.4

SREK1-216, Transcript of splicing regulatory glutamic acid and lysine rich protein 1, humanhuman

TSL 1 (best) BASIC

Gene SREK1, Length 2,128 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREK1-216ENST00000612404 TM4SF1P30408 202 aa21.73■■□□□ 1.07
SREK1-216ENST00000612404 RFX5P48382 616 aaPredicted RBP21.73■■□□□ 1.07
SREK1-216ENST00000612404 HSP90AB4PQ58FF6 505 aa21.73■■□□□ 1.07
SREK1-216ENST00000612404 DDX60Q8IY21 1712 aaKnown RBP21.73■■□□□ 1.07
SREK1-216ENST00000612404 CCDC24Q8N4L8 307 aa21.73■■□□□ 1.07
SREK1-216ENST00000612404 NOP58Q9Y2X3 529 aaKnown RBP21.73■■□□□ 1.07
SREK1-216ENST00000612404 SMARCA5O60264 1052 aaPredicted RBP21.72■■□□□ 1.07
SREK1-216ENST00000612404 RAB11FIP3O75154 756 aa21.72■■□□□ 1.07
SREK1-216ENST00000612404 PTPN12Q05209 780 aaKnown RBP21.72■■□□□ 1.07
SREK1-216ENST00000612404 G3BP1Q13283 466 aaKnown RBP eCLIP21.72■■□□□ 1.07
SREK1-216ENST00000612404 CNBD1Q8NA66 436 aa21.72■■□□□ 1.07
SREK1-216ENST00000612404 LRRCC1Q9C099 1032 aa21.72■■□□□ 1.07
SREK1-216ENST00000612404 GREM2Q9H772 168 aa21.72■■□□□ 1.07
SREK1-216ENST00000612404 IFIT5Q13325 482 aaKnown RBP21.71■■□□□ 1.07
SREK1-216ENST00000612404 MSL1Q68DK7 614 aa21.71■■□□□ 1.07
SREK1-216ENST00000612404 PELP1Q8IZL8 1130 aaKnown RBP21.71■■□□□ 1.07
SREK1-216ENST00000612404 ABCC12Q96J65 1359 aa21.71■■□□□ 1.07
SREK1-216ENST00000612404 SERPINB2P05120 415 aa21.71■■□□□ 1.07
SREK1-216ENST00000612404 COPRSQ9NQ92 184 aa21.71■■□□□ 1.07
SREK1-216ENST00000612404 LAMB2P55268 1798 aa21.7■■□□□ 1.07
SREK1-216ENST00000612404 QSER1Q2KHR3 1735 aa21.7■■□□□ 1.06
SREK1-216ENST00000612404 ITGA6P23229 1130 aa21.7■■□□□ 1.06
SREK1-216ENST00000612404 DDR1Q08345 913 aa21.7■■□□□ 1.06
SREK1-216ENST00000612404 TAF7LQ5H9L4 462 aa21.7■■□□□ 1.06
SREK1-216ENST00000612404 ZNF594Q96JF6 807 aaPredicted RBP21.7■■□□□ 1.06
SREK1-216ENST00000612404 POLRMTO00411 1230 aaKnown RBP21.69■■□□□ 1.06
SREK1-216ENST00000612404 CCDC152Q4G0S7 254 aa21.69■■□□□ 1.06
SREK1-216ENST00000612404 SLC10A5Q5PT55 438 aa21.69■■□□□ 1.06
SREK1-216ENST00000612404 ANKRD18BA2A2Z9 1011 aa21.68■■□□□ 1.06
SREK1-216ENST00000612404 PDE4AP27815 886 aa21.68■■□□□ 1.06
SREK1-216ENST00000612404 ERC1Q8IUD2 1116 aa21.68■■□□□ 1.06
SREK1-216ENST00000612404 KIF1BPQ96EK5 621 aa21.68■■□□□ 1.06
SREK1-216ENST00000612404 PRR5LQ6MZQ0 368 aa21.68■■□□□ 1.06
SREK1-216ENST00000612404 RHPN1Q8TCX5 695 aa21.68■■□□□ 1.06
SREK1-216ENST00000612404 IL1RAPL2Q9NP60 686 aa21.68■■□□□ 1.06
SREK1-216ENST00000612404 C3orf67Q6ZVT6 689 aa21.67■■□□□ 1.06
SREK1-216ENST00000612404 NLRP3Q96P20 1036 aa21.67■■□□□ 1.06
SREK1-216ENST00000612404 MMP10P09238 476 aa21.67■■□□□ 1.06
SREK1-216ENST00000612404 ST5P78524 1137 aa21.67■■□□□ 1.06
SREK1-216ENST00000612404 PDGFDQ9GZP0 370 aaPredicted RBP21.67■■□□□ 1.06
SREK1-216ENST00000612404 C16orf71Q8IYS4 520 aaPredicted RBP21.66■■□□□ 1.06
SREK1-216ENST00000612404 PARP3Q9Y6F1 533 aa21.65■■□□□ 1.06
SREK1-216ENST00000612404 SEC31BQ9NQW1 1179 aa21.65■■□□□ 1.06
SREK1-216ENST00000612404 SASH1O94885 1247 aa21.64■■□□□ 1.06
SREK1-216ENST00000612404 SF3B3Q15393 1217 aaKnown RBP21.64■■□□□ 1.06
SREK1-216ENST00000612404 EYA2O00167 538 aa21.64■■□□□ 1.05
SREK1-216ENST00000612404 LRRC24Q50LG9 513 aa21.64■■□□□ 1.05
SREK1-216ENST00000612404 PUS3Q9BZE2 481 aaKnown RBP21.64■■□□□ 1.05
SREK1-216ENST00000612404 CASZ1Q86V15 1759 aa21.63■■□□□ 1.05
SREK1-216ENST00000612404 RTL9Q8NET4 1388 aa21.63■■□□□ 1.05
SREK1-216ENST00000612404 LDHAL6AQ6ZMR3 332 aa21.62■■□□□ 1.05
SREK1-216ENST00000612404 ATG9AQ7Z3C6 839 aa21.62■■□□□ 1.05
SREK1-216ENST00000612404 OTUD7AQ8TE49 926 aaPredicted RBP21.62■■□□□ 1.05
SREK1-216ENST00000612404 CIAO1O76071 339 aa21.62■■□□□ 1.05
SREK1-216ENST00000612404 IL15P40933 162 aaPredicted RBP21.62■■□□□ 1.05
SREK1-216ENST00000612404 TFCP2Q12800 502 aa21.62■■□□□ 1.05
SREK1-216ENST00000612404 CLASRPQ8N2M8 674 aaKnown RBP21.62■■□□□ 1.05
SREK1-216ENST00000612404 CNNM1Q9NRU3 951 aa21.62■■□□□ 1.05
SREK1-216ENST00000612404 ILDR2Q71H61 639 aa21.61■■□□□ 1.05
SREK1-216ENST00000612404 TNRC6CQ9HCJ0 1690 aaKnown RBP21.61■■□□□ 1.05
SREK1-216ENST00000612404 FBXO3Q9UK99 471 aa21.61■■□□□ 1.05
SREK1-216ENST00000612404 CDC5LQ99459 802 aaKnown RBP21.6■■□□□ 1.05
SREK1-216ENST00000612404 MPHOSPH8Q99549 860 aa21.6■■□□□ 1.05
SREK1-216ENST00000612404 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.6■■□□□ 1.05
SREK1-216ENST00000612404 IGHMBP2P38935 993 aaKnown RBP21.59■■□□□ 1.05
SREK1-216ENST00000612404 PLEKHM2Q8IWE5 1019 aa21.59■■□□□ 1.05
SREK1-216ENST00000612404 AACSQ86V21 672 aa21.59■■□□□ 1.05
SREK1-216ENST00000612404 SLC16A10Q8TF71 515 aa21.59■■□□□ 1.05
SREK1-216ENST00000612404 R3HDM1Q15032 1099 aaKnown RBP21.58■■□□□ 1.05
SREK1-216ENST00000612404 DDX46Q7L014 1031 aaKnown RBP21.58■■□□□ 1.05
SREK1-216ENST00000612404 RIC1Q4ADV7 1423 aa21.58■■□□□ 1.05
SREK1-216ENST00000612404 ANKRD18AQ8IVF6 992 aa21.58■■□□□ 1.04
SREK1-216ENST00000612404 CEP126Q9P2H0 1117 aa21.58■■□□□ 1.04
SREK1-216ENST00000612404 RIPOR2Q9Y4F9 1068 aa21.58■■□□□ 1.04
SREK1-216ENST00000612404 NRXN2Q9P2S2 1712 aa21.58■■□□□ 1.04
SREK1-216ENST00000612404 IFIT2P09913 472 aaKnown RBP21.57■■□□□ 1.04
SREK1-216ENST00000612404 METTL24Q5JXM2 366 aa21.57■■□□□ 1.04
SREK1-216ENST00000612404 RPGRQ92834 1020 aaKnown RBP21.57■■□□□ 1.04
SREK1-216ENST00000612404 TAF1P21675 1872 aa21.57■■□□□ 1.04
SREK1-216ENST00000612404 SPEF2Q9C093 1822 aa21.57■■□□□ 1.04
SREK1-216ENST00000612404 MX1P20591 662 aa21.56■■□□□ 1.04
SREK1-216ENST00000612404 TNNI3KQ59H18 835 aa21.56■■□□□ 1.04
SREK1-216ENST00000612404 EAF2Q96CJ1 260 aaPredicted RBP21.56■■□□□ 1.04
SREK1-216ENST00000612404 BRIP1Q9BX63 1249 aa21.56■■□□□ 1.04
SREK1-216ENST00000612404 FPGT-TNNI3KV9GXZ4 949 aa21.56■■□□□ 1.04
SREK1-216ENST00000612404 TSHZ3Q63HK5 1081 aa21.55■■□□□ 1.04
SREK1-216ENST00000612404 CELF1Q92879 486 aaKnown RBP21.55■■□□□ 1.04
SREK1-216ENST00000612404 CCDC8Q9H0W5 538 aaPredicted RBP21.55■■□□□ 1.04
SREK1-216ENST00000612404 ZBTB7AO95365 584 aa21.55■■□□□ 1.04
SREK1-216ENST00000612404 PDE1AP54750 535 aa21.55■■□□□ 1.04
SREK1-216ENST00000612404 COL4A1P02462 1669 aa21.54■■□□□ 1.04
SREK1-216ENST00000612404 LRP5O75197 1615 aa21.54■■□□□ 1.04
SREK1-216ENST00000612404 CRY2Q49AN0 593 aa21.54■■□□□ 1.04
SREK1-216ENST00000612404 MROH5Q6ZUA9 1318 aa21.54■■□□□ 1.04
SREK1-216ENST00000612404 SALL3Q9BXA9 1300 aa21.54■■□□□ 1.04
SREK1-216ENST00000612404 RPS8P62241 208 aaKnown RBP21.53■■□□□ 1.04
SREK1-216ENST00000612404 NEUROD6Q96NK8 337 aa21.53■■□□□ 1.04
SREK1-216ENST00000612404 ANKRD31Q8N7Z5 1873 aa21.53■■□□□ 1.04
SREK1-216ENST00000612404 PSDA5PKW4 1024 aaPredicted RBP21.52■■□□□ 1.04
SREK1-216ENST00000612404 PDE6BP35913 854 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms