RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, human

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-223	ENST00000611659	CCAR1	Q8IX12	1150 aa	Known RBP	14.03	□□□□□ -0.16
TPM3-223	ENST00000611659	ERO1A	Q96HE7	468 aa		14.03	□□□□□ -0.16
TPM3-223	ENST00000611659	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	14.03	□□□□□ -0.16
TPM3-223	ENST00000611659	PXDNL	A1KZ92	1463 aa		14.03	□□□□□ -0.16
TPM3-223	ENST00000611659	USP31	Q70CQ4	1352 aa		14.02	□□□□□ -0.16
TPM3-223	ENST00000611659	CCDC66	A2RUB6	948 aa		14.02	□□□□□ -0.16
TPM3-223	ENST00000611659	NEMF	O60524	1076 aa		14.02	□□□□□ -0.16
TPM3-223	ENST00000611659	LTK	P29376	864 aa		14.02	□□□□□ -0.16
TPM3-223	ENST00000611659	LRRC2	Q9BYS8	371 aa		14.02	□□□□□ -0.16
TPM3-223	ENST00000611659	TLR7	Q9NYK1	1049 aa	Known RBP	14.02	□□□□□ -0.16
TPM3-223	ENST00000611659	CFAP45	Q9UL16	551 aa		14.02	□□□□□ -0.16
TPM3-223	ENST00000611659	RICTOR	Q6R327	1708 aa		14.02	□□□□□ -0.17
TPM3-223	ENST00000611659	FAM208A	Q9UK61	1670 aa	Known RBP	14.02	□□□□□ -0.17
TPM3-223	ENST00000611659	HIP1	O00291	1037 aa		14.02	□□□□□ -0.17
TPM3-223	ENST00000611659	KCNQ3	O43525	872 aa		14.02	□□□□□ -0.17
TPM3-223	ENST00000611659	SLU7	O95391	586 aa	Known RBP	14.02	□□□□□ -0.17
TPM3-223	ENST00000611659	RBM6	P78332	1123 aa	Known RBP	14.02	□□□□□ -0.17
TPM3-223	ENST00000611659	CWF19L2	Q2TBE0	894 aa	Known RBP	14.02	□□□□□ -0.17
TPM3-223	ENST00000611659	NYAP1	Q6ZVC0	841 aa		14.02	□□□□□ -0.17
TPM3-223	ENST00000611659	ZNF589	Q86UQ0	364 aa	Predicted RBP	14.02	□□□□□ -0.17
TPM3-223	ENST00000611659	RBM33	Q96EV2	1170 aa	Known RBP	14.02	□□□□□ -0.17
TPM3-223	ENST00000611659	MRFAP1L1	Q96HT8	127 aa		14.02	□□□□□ -0.17
TPM3-223	ENST00000611659	CAVIN2	O95810	425 aa		14.01	□□□□□ -0.17
TPM3-223	ENST00000611659	ERC1	Q8IUD2	1116 aa		14.01	□□□□□ -0.17
TPM3-223	ENST00000611659	CCAR2	Q8N163	923 aa	Known RBP	14.01	□□□□□ -0.17
TPM3-223	ENST00000611659	EAF2	Q96CJ1	260 aa	Predicted RBP	14.01	□□□□□ -0.17
TPM3-223	ENST00000611659	EDC3	Q96F86	508 aa	Known RBP	14.01	□□□□□ -0.17
TPM3-223	ENST00000611659	NAP1L2	Q9ULW6	460 aa	Predicted RBP	14.01	□□□□□ -0.17
TPM3-223	ENST00000611659	AKAP12	Q02952	1782 aa		14.01	□□□□□ -0.17
TPM3-223	ENST00000611659	KIN	O60870	393 aa	Known RBP	14.01	□□□□□ -0.17
TPM3-223	ENST00000611659	GTF2E1	P29083	439 aa	Predicted RBP	14.01	□□□□□ -0.17
TPM3-223	ENST00000611659	REST	Q13127	1097 aa		14.01	□□□□□ -0.17
TPM3-223	ENST00000611659	G3BP1	Q13283	466 aa	Known RBP eCLIP	14.01	□□□□□ -0.17	1e-6	■■■□□ 15.4
TPM3-223	ENST00000611659	CCDC73	Q6ZRK6	1079 aa		14.01	□□□□□ -0.17
TPM3-223	ENST00000611659	AOPEP	Q8N6M6	819 aa		14.01	□□□□□ -0.17
TPM3-223	ENST00000611659	RGPD1	P0DJD0	1748 aa		14.01	□□□□□ -0.17
TPM3-223	ENST00000611659	CCZ1B	P86790	482 aa		14.01	□□□□□ -0.17
TPM3-223	ENST00000611659	CCZ1	P86791	482 aa	Predicted RBP	14.01	□□□□□ -0.17
TPM3-223	ENST00000611659	MAP3K2	Q9Y2U5	619 aa		14.01	□□□□□ -0.17
TPM3-223	ENST00000611659	ERCC6L	Q2NKX8	1250 aa		14	□□□□□ -0.17
TPM3-223	ENST00000611659	GORAB	Q5T7V8	394 aa		14	□□□□□ -0.17
TPM3-223	ENST00000611659	SARM1	Q6SZW1	724 aa		14	□□□□□ -0.17
TPM3-223	ENST00000611659	GTF3C6	Q969F1	213 aa		14	□□□□□ -0.17
TPM3-223	ENST00000611659	SPATA31D1	Q6ZQQ2	1576 aa		14	□□□□□ -0.17
TPM3-223	ENST00000611659	VGLL3	A8MV65	326 aa		14	□□□□□ -0.17
TPM3-223	ENST00000611659	MAPK8IP2	Q13387	824 aa	Predicted RBP	14	□□□□□ -0.17
TPM3-223	ENST00000611659	SNW1	Q13573	536 aa	Known RBP	14	□□□□□ -0.17
TPM3-223	ENST00000611659		Q6ZUG5	572 aa		14	□□□□□ -0.17
TPM3-223	ENST00000611659	LGR6	Q9HBX8	967 aa		14	□□□□□ -0.17
TPM3-223	ENST00000611659	TMEM51	Q9NW97	253 aa		14	□□□□□ -0.17
TPM3-223	ENST00000611659	HDGF	P51858	240 aa	Known RBP	13.99	□□□□□ -0.17
TPM3-223	ENST00000611659	EIF4A1	P60842	406 aa	Known RBP	13.99	□□□□□ -0.17
TPM3-223	ENST00000611659	GOLPH3L	Q9H4A5	285 aa		13.99	□□□□□ -0.17
TPM3-223	ENST00000611659	SETD1A	O15047	1707 aa	Known RBP	13.99	□□□□□ -0.17
TPM3-223	ENST00000611659	ME1	P48163	572 aa		13.99	□□□□□ -0.17
TPM3-223	ENST00000611659	GUCY1B3	Q02153	619 aa		13.99	□□□□□ -0.17
TPM3-223	ENST00000611659	SYT10	Q6XYQ8	523 aa		13.99	□□□□□ -0.17
TPM3-223	ENST00000611659	KLHDC4	Q8TBB5	520 aa		13.99	□□□□□ -0.17
TPM3-223	ENST00000611659	SIRT1	Q96EB6	747 aa		13.99	□□□□□ -0.17
TPM3-223	ENST00000611659	TRERF1	Q96PN7	1200 aa		13.99	□□□□□ -0.17
TPM3-223	ENST00000611659	FMNL2	Q96PY5	1086 aa		13.99	□□□□□ -0.17
TPM3-223	ENST00000611659	SASH1	O94885	1247 aa		13.99	□□□□□ -0.17
TPM3-223	ENST00000611659	SMC2	O95347	1197 aa		13.99	□□□□□ -0.17
TPM3-223	ENST00000611659	DHX40	Q8IX18	779 aa	Known RBP	13.99	□□□□□ -0.17
TPM3-223	ENST00000611659	CEP57L1	Q8IYX8	460 aa		13.99	□□□□□ -0.17
TPM3-223	ENST00000611659	NEK1	Q96PY6	1258 aa		13.99	□□□□□ -0.17
TPM3-223	ENST00000611659	ANO10	Q9NW15	660 aa		13.99	□□□□□ -0.17
TPM3-223	ENST00000611659	HOXC9	P31274	260 aa		13.98	□□□□□ -0.17
TPM3-223	ENST00000611659	ZRSR1	Q15695	479 aa	Known RBP	13.98	□□□□□ -0.17
TPM3-223	ENST00000611659	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	13.98	□□□□□ -0.17
TPM3-223	ENST00000611659	ZNF446	Q9NWS9	450 aa		13.98	□□□□□ -0.17
TPM3-223	ENST00000611659	NDUFB9	Q9Y6M9	179 aa		13.98	□□□□□ -0.17
TPM3-223	ENST00000611659	CTAGE5	O15320	804 aa		13.98	□□□□□ -0.17
TPM3-223	ENST00000611659	TIGD1	Q96MW7	591 aa		13.98	□□□□□ -0.17
TPM3-223	ENST00000611659	SDF4	Q9BRK5	362 aa		13.98	□□□□□ -0.17
TPM3-223	ENST00000611659	ADCY9	O60503	1353 aa		13.98	□□□□□ -0.17
TPM3-223	ENST00000611659	TEF	Q10587	303 aa		13.97	□□□□□ -0.17
TPM3-223	ENST00000611659	AIMP1	Q12904	312 aa	Known RBP	13.97	□□□□□ -0.17
TPM3-223	ENST00000611659	FSIP1	Q8NA03	581 aa		13.97	□□□□□ -0.17
TPM3-223	ENST00000611659	LRRN4CL	Q8ND94	238 aa		13.97	□□□□□ -0.17
TPM3-223	ENST00000611659	NOL10	Q9BSC4	688 aa	Known RBP	13.97	□□□□□ -0.17
TPM3-223	ENST00000611659	NPHP4	O75161	1426 aa	Predicted RBP	13.97	□□□□□ -0.17
TPM3-223	ENST00000611659	CCDC129	Q6ZRS4	1044 aa		13.97	□□□□□ -0.17
TPM3-223	ENST00000611659	HOMER1	Q86YM7	354 aa		13.97	□□□□□ -0.17
TPM3-223	ENST00000611659	CHGB	P05060	677 aa		13.97	□□□□□ -0.17
TPM3-223	ENST00000611659	MTX1	Q13505	466 aa		13.97	□□□□□ -0.17
TPM3-223	ENST00000611659	USP28	Q96RU2	1077 aa		13.97	□□□□□ -0.17
TPM3-223	ENST00000611659	BICC1	Q9H694	974 aa	Known RBP	13.97	□□□□□ -0.17
TPM3-223	ENST00000611659	BABAM1	Q9NWV8	329 aa		13.97	□□□□□ -0.17
TPM3-223	ENST00000611659	HMG20B	Q9P0W2	317 aa		13.97	□□□□□ -0.17
TPM3-223	ENST00000611659	CCDC9	Q9Y3X0	531 aa	Known RBP	13.97	□□□□□ -0.17
TPM3-223	ENST00000611659	BTBD11	A6QL63	1104 aa		13.96	□□□□□ -0.17
TPM3-223	ENST00000611659	CCT2	P78371	535 aa	Known RBP	13.96	□□□□□ -0.17
TPM3-223	ENST00000611659	IRX5	P78411	483 aa	Predicted RBP	13.96	□□□□□ -0.17
TPM3-223	ENST00000611659	SCRN1	Q12765	414 aa		13.96	□□□□□ -0.17
TPM3-223	ENST00000611659	TMC6	Q7Z403	805 aa		13.96	□□□□□ -0.17
TPM3-223	ENST00000611659	AMOTL2	Q9Y2J4	779 aa		13.96	□□□□□ -0.17
TPM3-223	ENST00000611659	NRXN3	Q9Y4C0	1643 aa		13.96	□□□□□ -0.17
TPM3-223	ENST00000611659	GIGYF1	O75420	1035 aa	Predicted RBP	13.96	□□□□□ -0.18
TPM3-223	ENST00000611659	TAF5L	O75529	589 aa		13.96	□□□□□ -0.18

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