RNA–Protein interactions for RNA: ENST00000602784.1

RNF40-212, Transcript of ring finger protein 40, humanhuman

TSL 3

Gene RNF40, Length 991 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-212ENST00000602784 SOGA3Q5TF21 947 aa17.5■□□□□ 0.39
RNF40-212ENST00000602784 TTLL11Q8NHH1 800 aa17.5■□□□□ 0.39
RNF40-212ENST00000602784 C7orf43Q8WVR3 580 aa17.5■□□□□ 0.39
RNF40-212ENST00000602784 WWC3Q9ULE0 1092 aa17.5■□□□□ 0.39
RNF40-212ENST00000602784 GOLGB1Q14789 3259 aaKnown RBP17.5■□□□□ 0.39
RNF40-212ENST00000602784 RTL9Q8NET4 1388 aa17.5■□□□□ 0.39
RNF40-212ENST00000602784 CSF1RP07333 972 aa17.49■□□□□ 0.39
RNF40-212ENST00000602784 DZIP1LQ8IYY4 767 aaKnown RBP17.49■□□□□ 0.39
RNF40-212ENST00000602784 HDAC5Q9UQL6 1122 aa17.49■□□□□ 0.39
RNF40-212ENST00000602784 SLX4Q8IY92 1834 aa17.49■□□□□ 0.39
RNF40-212ENST00000602784 FOXO4P98177 505 aa17.48■□□□□ 0.39
RNF40-212ENST00000602784 GRAPQ13588 217 aa17.48■□□□□ 0.39
RNF40-212ENST00000602784 GRIPAP1Q4V328 841 aa17.48■□□□□ 0.39
RNF40-212ENST00000602784 CC2D2BQ6DHV5 1058 aa17.48■□□□□ 0.39
RNF40-212ENST00000602784 TMC4Q7Z404 712 aa17.48■□□□□ 0.39
RNF40-212ENST00000602784 FTSJ3Q8IY81 847 aaKnown RBP17.48■□□□□ 0.39
RNF40-212ENST00000602784 GRAPLQ8TC17 118 aaPredicted RBP17.48■□□□□ 0.39
RNF40-212ENST00000602784 CLUAP1Q96AJ1 413 aa17.48■□□□□ 0.39
RNF40-212ENST00000602784 MYH3P11055 1940 aa17.48■□□□□ 0.39
RNF40-212ENST00000602784 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.47■□□□□ 0.39
RNF40-212ENST00000602784 TNNQ9UQP3 1299 aa17.47■□□□□ 0.39
RNF40-212ENST00000602784 C21orf2O43822 256 aa17.46■□□□□ 0.39
RNF40-212ENST00000602784 RPS8P62241 208 aaKnown RBP17.46■□□□□ 0.39
RNF40-212ENST00000602784 TMEM57Q8N5G2 664 aa17.46■□□□□ 0.39
RNF40-212ENST00000602784 KAZALD1Q96I82 304 aa17.46■□□□□ 0.39
RNF40-212ENST00000602784 ATP6V0A2Q9Y487 856 aa17.46■□□□□ 0.39
RNF40-212ENST00000602784 PPEF1O14829 653 aaPredicted RBP17.45■□□□□ 0.38
RNF40-212ENST00000602784 GNAI3P08754 354 aa17.45■□□□□ 0.38
RNF40-212ENST00000602784 EPHA10Q5JZY3 1008 aa17.45■□□□□ 0.38
RNF40-212ENST00000602784 ARHGAP27Q6ZUM4 889 aa17.45■□□□□ 0.38
RNF40-212ENST00000602784 SP8Q8IXZ3 490 aa17.45■□□□□ 0.38
RNF40-212ENST00000602784 RTKN2Q8IZC4 609 aa17.45■□□□□ 0.38
RNF40-212ENST00000602784 SUCLG2Q96I99 432 aa17.45■□□□□ 0.38
RNF40-212ENST00000602784 CDC5LQ99459 802 aaKnown RBP17.45■□□□□ 0.38
RNF40-212ENST00000602784 GREM2Q9H772 168 aa17.45■□□□□ 0.38
RNF40-212ENST00000602784 UBTFL1P0CB47 393 aaPredicted RBP17.44■□□□□ 0.38
RNF40-212ENST00000602784 RLBP1P12271 317 aa17.44■□□□□ 0.38
RNF40-212ENST00000602784 PDE3AQ14432 1141 aa17.44■□□□□ 0.38
RNF40-212ENST00000602784 RABL6Q3YEC7 729 aaPredicted RBP17.44■□□□□ 0.38
RNF40-212ENST00000602784 CCDC93Q567U6 631 aa17.44■□□□□ 0.38
RNF40-212ENST00000602784 LMBR1LQ6UX01 489 aa17.44■□□□□ 0.38
RNF40-212ENST00000602784 CELF1Q92879 486 aaKnown RBP17.44■□□□□ 0.38
RNF40-212ENST00000602784 TMX4Q9H1E5 349 aaPredicted RBP17.44■□□□□ 0.38
RNF40-212ENST00000602784 SEC31BQ9NQW1 1179 aa17.44■□□□□ 0.38
RNF40-212ENST00000602784 CACNA1SQ13698 1873 aa17.44■□□□□ 0.38
RNF40-212ENST00000602784 CCDC85AQ96PX6 553 aaPredicted RBP17.43■□□□□ 0.38
RNF40-212ENST00000602784 MEIS3Q99687 375 aa17.43■□□□□ 0.38
RNF40-212ENST00000602784 LTBP3Q9NS15 1303 aa17.43■□□□□ 0.38
RNF40-212ENST00000602784 PLIN1O60240 522 aa17.42■□□□□ 0.38
RNF40-212ENST00000602784 ITGA6P23229 1130 aa17.42■□□□□ 0.38
RNF40-212ENST00000602784 IFIT5Q13325 482 aaKnown RBP17.42■□□□□ 0.38
RNF40-212ENST00000602784 FAM161AQ3B820 660 aa17.42■□□□□ 0.38
RNF40-212ENST00000602784 ANKRD18AQ8IVF6 992 aa17.42■□□□□ 0.38
RNF40-212ENST00000602784 PANK1Q8TE04 598 aa17.42■□□□□ 0.38
RNF40-212ENST00000602784 BICC1Q9H694 974 aaKnown RBP17.42■□□□□ 0.38
RNF40-212ENST00000602784 ZNF219Q9P2Y4 722 aaPredicted RBP17.42■□□□□ 0.38
RNF40-212ENST00000602784 TAF1P21675 1872 aa17.41■□□□□ 0.38
RNF40-212ENST00000602784 SNED1Q8TER0 1413 aa17.41■□□□□ 0.38
RNF40-212ENST00000602784 ANKRD18BA2A2Z9 1011 aa17.41■□□□□ 0.38
RNF40-212ENST00000602784 ITPRIPQ8IWB1 547 aa17.41■□□□□ 0.38
RNF40-212ENST00000602784 ANKRD44Q8N8A2 993 aa17.41■□□□□ 0.38
RNF40-212ENST00000602784 BSDC1Q9NW68 430 aaPredicted RBP17.41■□□□□ 0.38
RNF40-212ENST00000602784 FER1L6Q2WGJ9 1857 aa17.41■□□□□ 0.38
RNF40-212ENST00000602784 UTRNP46939 3433 aa17.4■□□□□ 0.38
RNF40-212ENST00000602784 NFKBIEO00221 500 aa17.4■□□□□ 0.38
RNF40-212ENST00000602784 ZBTB7BO15156 539 aaPredicted RBP17.4■□□□□ 0.38
RNF40-212ENST00000602784 CCDC57Q2TAC2 916 aa17.4■□□□□ 0.38
RNF40-212ENST00000602784 PSMD1Q99460 953 aa17.4■□□□□ 0.38
RNF40-212ENST00000602784 GNAI2P04899 355 aa17.39■□□□□ 0.37
RNF40-212ENST00000602784 IGHMBP2P38935 993 aaKnown RBP17.39■□□□□ 0.37
RNF40-212ENST00000602784 FKBP4Q02790 459 aaKnown RBP eCLIP17.39■□□□□ 0.37
RNF40-212ENST00000602784 OLFM4Q6UX06 510 aa17.39■□□□□ 0.37
RNF40-212ENST00000602784 TAOK3Q9H2K8 898 aa17.39■□□□□ 0.37
RNF40-212ENST00000602784 CHMP3Q9Y3E7 222 aa17.39■□□□□ 0.37
RNF40-212ENST00000602784 LRRFIP2Q9Y608 721 aaKnown RBP17.39■□□□□ 0.37
RNF40-212ENST00000602784 COL4A1P02462 1669 aa17.39■□□□□ 0.37
RNF40-212ENST00000602784 LMNB1P20700 586 aa17.38■□□□□ 0.37
RNF40-212ENST00000602784 MVPQ14764 893 aaKnown RBP17.38■□□□□ 0.37
RNF40-212ENST00000602784 RTFDC1Q9BY42 306 aaPredicted RBP17.38■□□□□ 0.37
RNF40-212ENST00000602784 CHMP4BQ9H444 224 aaKnown RBP17.38■□□□□ 0.37
RNF40-212ENST00000602784 DDX19BQ9UMR2 479 aa17.38■□□□□ 0.37
RNF40-212ENST00000602784 CHD4Q14839 1912 aa17.38■□□□□ 0.37
RNF40-212ENST00000602784 LRRC37AA6NMS7 1700 aa17.38■□□□□ 0.37
RNF40-212ENST00000602784 RRP1P56182 461 aaKnown RBP17.37■□□□□ 0.37
RNF40-212ENST00000602784 MTX1Q13505 466 aa17.37■□□□□ 0.37
RNF40-212ENST00000602784 MPNDQ8N594 471 aa17.37■□□□□ 0.37
RNF40-212ENST00000602784 MPHOSPH8Q99549 860 aa17.37■□□□□ 0.37
RNF40-212ENST00000602784 VPS33BQ9H267 617 aa17.37■□□□□ 0.37
RNF40-212ENST00000602784 PODXL2Q9NZ53 605 aa17.37■□□□□ 0.37
RNF40-212ENST00000602784 DPP8Q6V1X1 898 aaPredicted RBP17.36■□□□□ 0.37
RNF40-212ENST00000602784 SUPT20HQ8NEM7 779 aa17.36■□□□□ 0.37
RNF40-212ENST00000602784 MINPP1Q9UNW1 487 aa17.36■□□□□ 0.37
RNF40-212ENST00000602784 RASSF7Q02833 373 aa17.35■□□□□ 0.37
RNF40-212ENST00000602784 TAF7LQ5H9L4 462 aa17.35■□□□□ 0.37
RNF40-212ENST00000602784 C20orf194Q5TEA3 1177 aa17.35■□□□□ 0.37
RNF40-212ENST00000602784 LDHAL6AQ6ZMR3 332 aa17.35■□□□□ 0.37
RNF40-212ENST00000602784 COG6Q9Y2V7 657 aa17.35■□□□□ 0.37
RNF40-212ENST00000602784 SBF1O95248 1867 aa17.35■□□□□ 0.37
RNF40-212ENST00000602784 PRELPP51888 382 aa17.34■□□□□ 0.37
RNF40-212ENST00000602784 GPSM2P81274 684 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms