RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 GCKRQ14397 625 aa24.55■■□□□ 1.52
UPF1-212ENST00000601689 DPY19L2Q6NUT2 758 aa24.55■■□□□ 1.52
UPF1-212ENST00000601689 ATP6V0A2Q9Y487 856 aa24.55■■□□□ 1.52
UPF1-212ENST00000601689 MRPL50Q8N5N7 158 aaKnown RBP24.54■■□□□ 1.52
UPF1-212ENST00000601689 SUPT20HQ8NEM7 779 aa24.54■■□□□ 1.52
UPF1-212ENST00000601689 SSH1Q8WYL5 1049 aa24.54■■□□□ 1.52
UPF1-212ENST00000601689 DICER1Q9UPY3 1922 aaKnown RBP24.53■■□□□ 1.52
UPF1-212ENST00000601689 F6X3S4 739 aa24.53■■□□□ 1.52
UPF1-212ENST00000601689 SP8Q8IXZ3 490 aa24.53■■□□□ 1.52
UPF1-212ENST00000601689 PSMD1Q99460 953 aa24.53■■□□□ 1.52
UPF1-212ENST00000601689 MYH3P11055 1940 aa24.53■■□□□ 1.52
UPF1-212ENST00000601689 UBE3BQ7Z3V4 1068 aa24.52■■□□□ 1.52
UPF1-212ENST00000601689 SRCIN1Q9C0H9 1055 aa24.52■■□□□ 1.52
UPF1-212ENST00000601689 C9orf78Q9NZ63 289 aaPredicted RBP24.52■■□□□ 1.52
UPF1-212ENST00000601689 H7C1W4 665 aa24.51■■□□□ 1.51
UPF1-212ENST00000601689 ALDH1L1O75891 902 aa24.51■■□□□ 1.51
UPF1-212ENST00000601689 JDP2Q8WYK2 163 aa24.51■■□□□ 1.51
UPF1-212ENST00000601689 JARID2Q92833 1246 aaPredicted RBP24.51■■□□□ 1.51
UPF1-212ENST00000601689 RPS8P62241 208 aaKnown RBP24.5■■□□□ 1.51
UPF1-212ENST00000601689 BEND3Q5T5X7 828 aa24.5■■□□□ 1.51
UPF1-212ENST00000601689 CDC5LQ99459 802 aaKnown RBP24.5■■□□□ 1.51
UPF1-212ENST00000601689 BCL2L13Q9BXK5 485 aa24.5■■□□□ 1.51
UPF1-212ENST00000601689 ZBED9Q6R2W3 1325 aa24.5■■□□□ 1.51
UPF1-212ENST00000601689 IARSP41252 1262 aaKnown RBP24.49■■□□□ 1.51
UPF1-212ENST00000601689 CTSWP56202 376 aa24.49■■□□□ 1.51
UPF1-212ENST00000601689 DPP8Q6V1X1 898 aaPredicted RBP24.49■■□□□ 1.51
UPF1-212ENST00000601689 MPNDQ8N594 471 aa24.49■■□□□ 1.51
UPF1-212ENST00000601689 VPS33BQ9H267 617 aa24.49■■□□□ 1.51
UPF1-212ENST00000601689 OLFM4Q6UX06 510 aa24.48■■□□□ 1.51
UPF1-212ENST00000601689 ANKRD18AQ8IVF6 992 aa24.48■■□□□ 1.51
UPF1-212ENST00000601689 ZNF277Q9NRM2 450 aaPredicted RBP24.48■■□□□ 1.51
UPF1-212ENST00000601689 TIAM2Q8IVF5 1701 aa24.47■■□□□ 1.51
UPF1-212ENST00000601689 KIF16BQ96L93 1317 aa24.46■■□□□ 1.51
UPF1-212ENST00000601689 GLTPD2A6NH11 291 aa24.46■■□□□ 1.51
UPF1-212ENST00000601689 GRM8O00222 908 aa24.46■■□□□ 1.51
UPF1-212ENST00000601689 C16orf71Q8IYS4 520 aaPredicted RBP24.46■■□□□ 1.51
UPF1-212ENST00000601689 CELF1Q92879 486 aaKnown RBP24.46■■□□□ 1.51
UPF1-212ENST00000601689 CCDC85AQ96PX6 553 aaPredicted RBP24.46■■□□□ 1.51
UPF1-212ENST00000601689 PLA2G12BQ9BX93 195 aa24.46■■□□□ 1.51
UPF1-212ENST00000601689 TAF1P21675 1872 aa24.46■■□□□ 1.51
UPF1-212ENST00000601689 LARGE2Q8N3Y3 721 aa24.45■■□□□ 1.5
UPF1-212ENST00000601689 TTLL11Q8NHH1 800 aa24.45■■□□□ 1.5
UPF1-212ENST00000601689 API5Q9BZZ5 524 aaKnown RBP24.45■■□□□ 1.5
UPF1-212ENST00000601689 IPO8O15397 1037 aaKnown RBP24.44■■□□□ 1.5
UPF1-212ENST00000601689 IGHMBP2P38935 993 aaKnown RBP24.44■■□□□ 1.5
UPF1-212ENST00000601689 BRPF1P55201 1214 aaPredicted RBP24.44■■□□□ 1.5
UPF1-212ENST00000601689 NSFL1CQ9UNZ2 370 aaKnown RBP24.44■■□□□ 1.5
UPF1-212ENST00000601689 PRELPP51888 382 aa24.43■■□□□ 1.5
UPF1-212ENST00000601689 RARSP54136 660 aaKnown RBP24.43■■□□□ 1.5
UPF1-212ENST00000601689 SEC31BQ9NQW1 1179 aa24.43■■□□□ 1.5
UPF1-212ENST00000601689 PPIP5K2O43314 1243 aa24.42■■□□□ 1.5
UPF1-212ENST00000601689 EIF6P56537 245 aaKnown RBP24.42■■□□□ 1.5
UPF1-212ENST00000601689 NIM1KQ8IY84 436 aa24.42■■□□□ 1.5
UPF1-212ENST00000601689 EYA3Q99504 573 aa24.42■■□□□ 1.5
UPF1-212ENST00000601689 NOB1Q9ULX3 412 aaKnown RBP24.42■■□□□ 1.5
UPF1-212ENST00000601689 CHMP3Q9Y3E7 222 aa24.42■■□□□ 1.5
UPF1-212ENST00000601689 MPHOSPH8Q99549 860 aa24.41■■□□□ 1.5
UPF1-212ENST00000601689 ANKIB1Q9P2G1 1089 aa24.41■■□□□ 1.5
UPF1-212ENST00000601689 HDAC5Q9UQL6 1122 aa24.41■■□□□ 1.5
UPF1-212ENST00000601689 RTL9Q8NET4 1388 aa24.41■■□□□ 1.5
UPF1-212ENST00000601689 ANKRD18BA2A2Z9 1011 aa24.4■■□□□ 1.5
UPF1-212ENST00000601689 CCT4P50991 539 aaKnown RBP24.4■■□□□ 1.5
UPF1-212ENST00000601689 RTFDC1Q9BY42 306 aaPredicted RBP24.4■■□□□ 1.5
UPF1-212ENST00000601689 GREM2Q9H772 168 aa24.4■■□□□ 1.5
UPF1-212ENST00000601689 C6orf229H3BNL8 230 aa24.39■■□□□ 1.49
UPF1-212ENST00000601689 VEGFAP15692 232 aaPredicted RBP24.39■■□□□ 1.49
UPF1-212ENST00000601689 CASP7P55210 303 aa24.39■■□□□ 1.49
UPF1-212ENST00000601689 IFIT5Q13325 482 aaKnown RBP24.39■■□□□ 1.49
UPF1-212ENST00000601689 ARHGAP45Q92619 1136 aa24.39■■□□□ 1.49
UPF1-212ENST00000601689 G3V3G9 751 aa24.38■■□□□ 1.49
UPF1-212ENST00000601689 CSF1RP07333 972 aa24.38■■□□□ 1.49
UPF1-212ENST00000601689 ITGA6P23229 1130 aa24.38■■□□□ 1.49
UPF1-212ENST00000601689 CCDC57Q2TAC2 916 aa24.38■■□□□ 1.49
UPF1-212ENST00000601689 TAF7LQ5H9L4 462 aa24.38■■□□□ 1.49
UPF1-212ENST00000601689 DCAF8Q5TAQ9 597 aa24.38■■□□□ 1.49
UPF1-212ENST00000601689 RRAGCQ9HB90 399 aa24.38■■□□□ 1.49
UPF1-212ENST00000601689 SNED1Q8TER0 1413 aa24.37■■□□□ 1.49
UPF1-212ENST00000601689 WASHC4Q2M389 1173 aa24.37■■□□□ 1.49
UPF1-212ENST00000601689 NMRK2Q9NPI5 230 aa24.37■■□□□ 1.49
UPF1-212ENST00000601689 BSDC1Q9NW68 430 aaPredicted RBP24.37■■□□□ 1.49
UPF1-212ENST00000601689 LRRC37AA6NMS7 1700 aa24.36■■□□□ 1.49
UPF1-212ENST00000601689 AOC3Q16853 763 aa24.36■■□□□ 1.49
UPF1-212ENST00000601689 GGA1Q9UJY5 639 aa24.36■■□□□ 1.49
UPF1-212ENST00000601689 IQCA1LA6NCM1 817 aa24.35■■□□□ 1.49
UPF1-212ENST00000601689 FZD9O00144 591 aa24.35■■□□□ 1.49
UPF1-212ENST00000601689 KIAA2012Q0VF49 1180 aa24.35■■□□□ 1.49
UPF1-212ENST00000601689 FAM161AQ3B820 660 aa24.35■■□□□ 1.49
UPF1-212ENST00000601689 FRAT1Q92837 279 aaPredicted RBP24.35■■□□□ 1.49
UPF1-212ENST00000601689 ZC3H12CQ9C0D7 883 aaKnown RBP24.35■■□□□ 1.49
UPF1-212ENST00000601689 PODXL2Q9NZ53 605 aa24.35■■□□□ 1.49
UPF1-212ENST00000601689 XDHP47989 1333 aa24.35■■□□□ 1.49
UPF1-212ENST00000601689 TOMM70O94826 608 aa24.34■■□□□ 1.49
UPF1-212ENST00000601689 ATP2B4P23634 1241 aa24.34■■□□□ 1.49
UPF1-212ENST00000601689 C1QTNF8P60827 252 aa24.34■■□□□ 1.49
UPF1-212ENST00000601689 GPSM2P81274 684 aa24.34■■□□□ 1.49
UPF1-212ENST00000601689 LMBR1LQ6UX01 489 aa24.34■■□□□ 1.49
UPF1-212ENST00000601689 KIF3CO14782 793 aa24.33■■□□□ 1.49
UPF1-212ENST00000601689 DDNO94850 711 aaPredicted RBP24.33■■□□□ 1.49
UPF1-212ENST00000601689 FOXO4P98177 505 aa24.33■■□□□ 1.49
UPF1-212ENST00000601689 GPC2Q8N158 579 aa24.33■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 154.5 ms