RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 LTBP3Q9NS15 1303 aa24.79■■□□□ 1.56
SHKBP1-221ENST00000599833 UTYO14607 1347 aa24.78■■□□□ 1.56
SHKBP1-221ENST00000599833 YY1P25490 414 aa24.77■■□□□ 1.56
SHKBP1-221ENST00000599833 CTSWP56202 376 aa24.77■■□□□ 1.56
SHKBP1-221ENST00000599833 GRAPQ13588 217 aa24.77■■□□□ 1.56
SHKBP1-221ENST00000599833 SLC4A10Q6U841 1118 aa24.77■■□□□ 1.56
SHKBP1-221ENST00000599833 TTLL11Q8NHH1 800 aa24.77■■□□□ 1.56
SHKBP1-221ENST00000599833 GRAPLQ8TC17 118 aaPredicted RBP24.77■■□□□ 1.56
SHKBP1-221ENST00000599833 CELF1Q92879 486 aaKnown RBP24.77■■□□□ 1.56
SHKBP1-221ENST00000599833 SRCIN1Q9C0H9 1055 aa24.77■■□□□ 1.56
SHKBP1-221ENST00000599833 SEC31BQ9NQW1 1179 aa24.77■■□□□ 1.56
SHKBP1-221ENST00000599833 DUOX1Q9NRD9 1551 aa24.76■■□□□ 1.55
SHKBP1-221ENST00000599833 TIAM2Q8IVF5 1701 aa24.76■■□□□ 1.55
SHKBP1-221ENST00000599833 GRM8O00222 908 aa24.76■■□□□ 1.55
SHKBP1-221ENST00000599833 PPEF1O14829 653 aaPredicted RBP24.76■■□□□ 1.55
SHKBP1-221ENST00000599833 KAZALD1Q96I82 304 aa24.76■■□□□ 1.55
SHKBP1-221ENST00000599833 TNNQ9UQP3 1299 aa24.76■■□□□ 1.55
SHKBP1-221ENST00000599833 RTL9Q8NET4 1388 aa24.76■■□□□ 1.55
SHKBP1-221ENST00000599833 CCDC93Q567U6 631 aa24.75■■□□□ 1.55
SHKBP1-221ENST00000599833 ARHGAP45Q92619 1136 aa24.75■■□□□ 1.55
SHKBP1-221ENST00000599833 KIF16BQ96L93 1317 aa24.75■■□□□ 1.55
SHKBP1-221ENST00000599833 CSF1RP07333 972 aa24.74■■□□□ 1.55
SHKBP1-221ENST00000599833 FOXO4P98177 505 aa24.74■■□□□ 1.55
SHKBP1-221ENST00000599833 EPHA10Q5JZY3 1008 aa24.74■■□□□ 1.55
SHKBP1-221ENST00000599833 SOGA3Q5TF21 947 aa24.74■■□□□ 1.55
SHKBP1-221ENST00000599833 DDX46Q7L014 1031 aaKnown RBP24.74■■□□□ 1.55
SHKBP1-221ENST00000599833 ATP6V0A2Q9Y487 856 aa24.74■■□□□ 1.55
SHKBP1-221ENST00000599833 COL4A5P29400 1685 aa24.74■■□□□ 1.55
SHKBP1-221ENST00000599833 SPEF2Q9C093 1822 aa24.74■■□□□ 1.55
SHKBP1-221ENST00000599833 BBOX1O75936 387 aa24.73■■□□□ 1.55
SHKBP1-221ENST00000599833 NBPF7P0C2Y1 421 aaPredicted RBP24.73■■□□□ 1.55
SHKBP1-221ENST00000599833 C9orf131Q5VYM1 1079 aa24.73■■□□□ 1.55
SHKBP1-221ENST00000599833 USP44Q9H0E7 712 aa24.72■■□□□ 1.55
SHKBP1-221ENST00000599833 GREM2Q9H772 168 aa24.72■■□□□ 1.55
SHKBP1-221ENST00000599833 TRIM27P14373 513 aa24.71■■□□□ 1.55
SHKBP1-221ENST00000599833 HSP90B1P14625 803 aaKnown RBP24.71■■□□□ 1.55
SHKBP1-221ENST00000599833 CCDC152Q4G0S7 254 aa24.71■■□□□ 1.55
SHKBP1-221ENST00000599833 SP8Q8IXZ3 490 aa24.71■■□□□ 1.55
SHKBP1-221ENST00000599833 CCDC85AQ96PX6 553 aaPredicted RBP24.71■■□□□ 1.55
SHKBP1-221ENST00000599833 API5Q9BZZ5 524 aaKnown RBP24.71■■□□□ 1.55
SHKBP1-221ENST00000599833 TAOK3Q9H2K8 898 aa24.71■■□□□ 1.55
SHKBP1-221ENST00000599833 LMNB1P20700 586 aa24.7■■□□□ 1.54
SHKBP1-221ENST00000599833 FKBP4Q02790 459 aaKnown RBP eCLIP24.7■■□□□ 1.54
SHKBP1-221ENST00000599833 CC2D2BQ6DHV5 1058 aa24.7■■□□□ 1.54
SHKBP1-221ENST00000599833 PSMD1Q99460 953 aa24.7■■□□□ 1.54
SHKBP1-221ENST00000599833 RTKN2Q8IZC4 609 aa24.69■■□□□ 1.54
SHKBP1-221ENST00000599833 SUCLG2Q96I99 432 aa24.69■■□□□ 1.54
SHKBP1-221ENST00000599833 RNF181Q9P0P0 153 aa24.69■■□□□ 1.54
SHKBP1-221ENST00000599833 A0A1B0GUL6 1792 aa24.68■■□□□ 1.54
SHKBP1-221ENST00000599833 RPS8P62241 208 aaKnown RBP24.68■■□□□ 1.54
SHKBP1-221ENST00000599833 FAM161AQ3B820 660 aa24.67■■□□□ 1.54
SHKBP1-221ENST00000599833 INTS3Q68E01 1043 aaKnown RBP24.67■■□□□ 1.54
SHKBP1-221ENST00000599833 ATF7IPQ6VMQ6 1270 aa24.67■■□□□ 1.54
SHKBP1-221ENST00000599833 ZNF784Q8NCA9 323 aaPredicted RBP24.67■■□□□ 1.54
SHKBP1-221ENST00000599833 RTFDC1Q9BY42 306 aaPredicted RBP24.67■■□□□ 1.54
SHKBP1-221ENST00000599833 CCT4P50991 539 aaKnown RBP24.66■■□□□ 1.54
SHKBP1-221ENST00000599833 TMC4Q7Z404 712 aa24.66■■□□□ 1.54
SHKBP1-221ENST00000599833 C9orf78Q9NZ63 289 aaPredicted RBP24.66■■□□□ 1.54
SHKBP1-221ENST00000599833 RABL6Q3YEC7 729 aaPredicted RBP24.65■■□□□ 1.54
SHKBP1-221ENST00000599833 GRIPAP1Q4V328 841 aa24.65■■□□□ 1.54
SHKBP1-221ENST00000599833 ANKRD44Q8N8A2 993 aa24.65■■□□□ 1.54
SHKBP1-221ENST00000599833 ZNF277Q9NRM2 450 aaPredicted RBP24.65■■□□□ 1.54
SHKBP1-221ENST00000599833 ITGA6P23229 1130 aa24.63■■□□□ 1.53
SHKBP1-221ENST00000599833 LMBR1LQ6UX01 489 aa24.63■■□□□ 1.53
SHKBP1-221ENST00000599833 FRAT1Q92837 279 aaPredicted RBP24.63■■□□□ 1.53
SHKBP1-221ENST00000599833 ZC3H4Q9UPT8 1303 aaKnown RBP24.62■■□□□ 1.53
SHKBP1-221ENST00000599833 IPO8O15397 1037 aaKnown RBP24.62■■□□□ 1.53
SHKBP1-221ENST00000599833 GPSM2P81274 684 aa24.62■■□□□ 1.53
SHKBP1-221ENST00000599833 ZKSCAN2Q63HK3 967 aa24.62■■□□□ 1.53
SHKBP1-221ENST00000599833 BICC1Q9H694 974 aaKnown RBP24.62■■□□□ 1.53
SHKBP1-221ENST00000599833 RLBP1P12271 317 aa24.61■■□□□ 1.53
SHKBP1-221ENST00000599833 IARSP41252 1262 aaKnown RBP24.61■■□□□ 1.53
SHKBP1-221ENST00000599833 ANKRD18AQ8IVF6 992 aa24.6■■□□□ 1.53
SHKBP1-221ENST00000599833 MPNDQ8N594 471 aa24.6■■□□□ 1.53
SHKBP1-221ENST00000599833 CDC5LQ99459 802 aaKnown RBP24.6■■□□□ 1.53
SHKBP1-221ENST00000599833 MEIS3Q99687 375 aa24.6■■□□□ 1.53
SHKBP1-221ENST00000599833 BSDC1Q9NW68 430 aaPredicted RBP24.6■■□□□ 1.53
SHKBP1-221ENST00000599833 PODXL2Q9NZ53 605 aa24.6■■□□□ 1.53
SHKBP1-221ENST00000599833 POLLQ9UGP5 575 aa24.6■■□□□ 1.53
SHKBP1-221ENST00000599833 TMEM57Q8N5G2 664 aa24.59■■□□□ 1.53
SHKBP1-221ENST00000599833 CLUAP1Q96AJ1 413 aa24.59■■□□□ 1.53
SHKBP1-221ENST00000599833 YTHDC1Q96MU7 727 aaKnown RBP24.59■■□□□ 1.53
SHKBP1-221ENST00000599833 DPP8Q6V1X1 898 aaPredicted RBP24.58■■□□□ 1.53
SHKBP1-221ENST00000599833 RCAN3Q9UKA8 241 aa24.58■■□□□ 1.53
SHKBP1-221ENST00000599833 MINPP1Q9UNW1 487 aa24.58■■□□□ 1.53
SHKBP1-221ENST00000599833 WTIPA6NIX2 430 aaPredicted RBP24.57■■□□□ 1.52
SHKBP1-221ENST00000599833 FZD9O00144 591 aa24.56■■□□□ 1.52
SHKBP1-221ENST00000599833 TBC1D16Q8TBP0 767 aa24.56■■□□□ 1.52
SHKBP1-221ENST00000599833 VPS33BQ9H267 617 aa24.56■■□□□ 1.52
SHKBP1-221ENST00000599833 WDR90Q96KV7 1748 aa24.55■■□□□ 1.52
SHKBP1-221ENST00000599833 ANKRD18BA2A2Z9 1011 aa24.55■■□□□ 1.52
SHKBP1-221ENST00000599833 IFIT5Q13325 482 aaKnown RBP24.55■■□□□ 1.52
SHKBP1-221ENST00000599833 AOC3Q16853 763 aa24.55■■□□□ 1.52
SHKBP1-221ENST00000599833 ZNF594Q96JF6 807 aaPredicted RBP24.55■■□□□ 1.52
SHKBP1-221ENST00000599833 NSFL1CQ9UNZ2 370 aaKnown RBP24.55■■□□□ 1.52
SHKBP1-221ENST00000599833 RFX5P48382 616 aaPredicted RBP24.54■■□□□ 1.52
SHKBP1-221ENST00000599833 KIAA2012Q0VF49 1180 aa24.54■■□□□ 1.52
SHKBP1-221ENST00000599833 GPR101Q96P66 508 aaPredicted RBP24.54■■□□□ 1.52
SHKBP1-221ENST00000599833 ZNF541Q9H0D2 1346 aa24.54■■□□□ 1.52
SHKBP1-221ENST00000599833 SCN9AQ15858 1988 aa24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms