RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 CC2D2BQ6DHV5 1058 aa20.81■□□□□ 0.92
SHKBP1-219ENST00000599575 C3orf67Q6ZVT6 689 aa20.81■□□□□ 0.92
SHKBP1-219ENST00000599575 TMEM57Q8N5G2 664 aa20.81■□□□□ 0.92
SHKBP1-219ENST00000599575 TTLL11Q8NHH1 800 aa20.81■□□□□ 0.92
SHKBP1-219ENST00000599575 LAMB2P55268 1798 aa20.81■□□□□ 0.92
SHKBP1-219ENST00000599575 DLEC1Q9Y238 1755 aa20.8■□□□□ 0.92
SHKBP1-219ENST00000599575 TNRC6CQ9HCJ0 1690 aaKnown RBP20.8■□□□□ 0.92
SHKBP1-219ENST00000599575 GRAPQ13588 217 aa20.79■□□□□ 0.92
SHKBP1-219ENST00000599575 GPR162Q16538 588 aa20.79■□□□□ 0.92
SHKBP1-219ENST00000599575 PRPF40BQ6NWY9 871 aaKnown RBP20.79■□□□□ 0.92
SHKBP1-219ENST00000599575 GRAPLQ8TC17 118 aaPredicted RBP20.79■□□□□ 0.92
SHKBP1-219ENST00000599575 JARID2Q92833 1246 aaPredicted RBP20.79■□□□□ 0.92
SHKBP1-219ENST00000599575 CDC5LQ99459 802 aaKnown RBP20.79■□□□□ 0.92
SHKBP1-219ENST00000599575 TMX4Q9H1E5 349 aaPredicted RBP20.79■□□□□ 0.92
SHKBP1-219ENST00000599575 BCS1LQ9Y276 419 aa20.79■□□□□ 0.92
SHKBP1-219ENST00000599575 DDX60Q8IY21 1712 aaKnown RBP20.78■□□□□ 0.92
SHKBP1-219ENST00000599575 RRP1P56182 461 aaKnown RBP20.78■□□□□ 0.92
SHKBP1-219ENST00000599575 FOXO4P98177 505 aa20.78■□□□□ 0.92
SHKBP1-219ENST00000599575 RABL6Q3YEC7 729 aaPredicted RBP20.78■□□□□ 0.92
SHKBP1-219ENST00000599575 ITPRIPQ8IWB1 547 aa20.78■□□□□ 0.92
SHKBP1-219ENST00000599575 DDX19BQ9UMR2 479 aa20.78■□□□□ 0.92
SHKBP1-219ENST00000599575 RLBP1P12271 317 aa20.77■□□□□ 0.92
SHKBP1-219ENST00000599575 MVPQ14764 893 aaKnown RBP20.77■□□□□ 0.92
SHKBP1-219ENST00000599575 TNNQ9UQP3 1299 aa20.77■□□□□ 0.92
SHKBP1-219ENST00000599575 COL11A2P13942 1736 aaPredicted RBP20.76■□□□□ 0.91
SHKBP1-219ENST00000599575 RPS8P62241 208 aaKnown RBP20.76■□□□□ 0.91
SHKBP1-219ENST00000599575 C7orf43Q8WVR3 580 aa20.76■□□□□ 0.91
SHKBP1-219ENST00000599575 SUCLG2Q96I99 432 aa20.76■□□□□ 0.91
SHKBP1-219ENST00000599575 MEIS3Q99687 375 aa20.76■□□□□ 0.91
SHKBP1-219ENST00000599575 ZBTB7BO15156 539 aaPredicted RBP20.75■□□□□ 0.91
SHKBP1-219ENST00000599575 PLIN1O60240 522 aa20.75■□□□□ 0.91
SHKBP1-219ENST00000599575 GNAI2P04899 355 aa20.75■□□□□ 0.91
SHKBP1-219ENST00000599575 IFIT5Q13325 482 aaKnown RBP20.75■□□□□ 0.91
SHKBP1-219ENST00000599575 LMBR1LQ6UX01 489 aa20.75■□□□□ 0.91
SHKBP1-219ENST00000599575 PANK1Q8TE04 598 aa20.75■□□□□ 0.91
SHKBP1-219ENST00000599575 KAZALD1Q96I82 304 aa20.75■□□□□ 0.91
SHKBP1-219ENST00000599575 ANKRD18BA2A2Z9 1011 aa20.74■□□□□ 0.91
SHKBP1-219ENST00000599575 PPEF1O14829 653 aaPredicted RBP20.74■□□□□ 0.91
SHKBP1-219ENST00000599575 BRCA1P38398 1863 aaKnown RBP20.74■□□□□ 0.91
SHKBP1-219ENST00000599575 CCDC57Q2TAC2 916 aa20.74■□□□□ 0.91
SHKBP1-219ENST00000599575 ANKRD18AQ8IVF6 992 aa20.74■□□□□ 0.91
SHKBP1-219ENST00000599575 SP8Q8IXZ3 490 aa20.74■□□□□ 0.91
SHKBP1-219ENST00000599575 RTKN2Q8IZC4 609 aa20.74■□□□□ 0.91
SHKBP1-219ENST00000599575 BICC1Q9H694 974 aaKnown RBP20.74■□□□□ 0.91
SHKBP1-219ENST00000599575 GREM2Q9H772 168 aa20.74■□□□□ 0.91
SHKBP1-219ENST00000599575 ATP6V0A2Q9Y487 856 aa20.74■□□□□ 0.91
SHKBP1-219ENST00000599575 GOLGB1Q14789 3259 aaKnown RBP20.73■□□□□ 0.91
SHKBP1-219ENST00000599575 YBX3P16989 372 aaKnown RBP eCLIP20.73■□□□□ 0.91
SHKBP1-219ENST00000599575 ITGA6P23229 1130 aa20.73■□□□□ 0.91
SHKBP1-219ENST00000599575 EPHA10Q5JZY3 1008 aa20.73■□□□□ 0.91
SHKBP1-219ENST00000599575 IGHMBP2P38935 993 aaKnown RBP20.72■□□□□ 0.91
SHKBP1-219ENST00000599575 MTX1Q13505 466 aa20.72■□□□□ 0.91
SHKBP1-219ENST00000599575 CCDC93Q567U6 631 aa20.72■□□□□ 0.91
SHKBP1-219ENST00000599575 PELP1Q8IZL8 1130 aaKnown RBP20.72■□□□□ 0.91
SHKBP1-219ENST00000599575 BSDC1Q9NW68 430 aaPredicted RBP20.72■□□□□ 0.91
SHKBP1-219ENST00000599575 C21orf2O43822 256 aa20.71■□□□□ 0.91
SHKBP1-219ENST00000599575 FAM161AQ3B820 660 aa20.71■□□□□ 0.91
SHKBP1-219ENST00000599575 ANKRD44Q8N8A2 993 aa20.71■□□□□ 0.91
SHKBP1-219ENST00000599575 CELF1Q92879 486 aaKnown RBP20.71■□□□□ 0.91
SHKBP1-219ENST00000599575 SEC31BQ9NQW1 1179 aa20.71■□□□□ 0.91
SHKBP1-219ENST00000599575 LRRFIP2Q9Y608 721 aaKnown RBP20.71■□□□□ 0.91
SHKBP1-219ENST00000599575 AAMPQ13685 434 aa20.7■□□□□ 0.9
SHKBP1-219ENST00000599575 COG6Q9Y2V7 657 aa20.7■□□□□ 0.9
SHKBP1-219ENST00000599575 CHMP3Q9Y3E7 222 aa20.7■□□□□ 0.9
SHKBP1-219ENST00000599575 LTBP3Q9NS15 1303 aa20.7■□□□□ 0.9
SHKBP1-219ENST00000599575 ARFGEF1Q9Y6D6 1849 aa20.69■□□□□ 0.9
SHKBP1-219ENST00000599575 CCDC85AQ96PX6 553 aaPredicted RBP20.69■□□□□ 0.9
SHKBP1-219ENST00000599575 MPHOSPH8Q99549 860 aa20.69■□□□□ 0.9
SHKBP1-219ENST00000599575 FBXO3Q9UK99 471 aa20.69■□□□□ 0.9
SHKBP1-219ENST00000599575 MYH3P11055 1940 aa20.68■□□□□ 0.9
SHKBP1-219ENST00000599575 TAF7LQ5H9L4 462 aa20.68■□□□□ 0.9
SHKBP1-219ENST00000599575 PSMD1Q99460 953 aa20.68■□□□□ 0.9
SHKBP1-219ENST00000599575 VPS33BQ9H267 617 aa20.68■□□□□ 0.9
SHKBP1-219ENST00000599575 ZBTB40Q9NUA8 1239 aa20.68■□□□□ 0.9
SHKBP1-219ENST00000599575 C20orf194Q5TEA3 1177 aa20.67■□□□□ 0.9
SHKBP1-219ENST00000599575 ARHGAP27Q6ZUM4 889 aa20.67■□□□□ 0.9
SHKBP1-219ENST00000599575 SUPT20HQ8NEM7 779 aa20.67■□□□□ 0.9
SHKBP1-219ENST00000599575 WWC3Q9ULE0 1092 aa20.67■□□□□ 0.9
SHKBP1-219ENST00000599575 CENPBP07199 599 aaPredicted RBP20.66■□□□□ 0.9
SHKBP1-219ENST00000599575 ANKRD2Q9GZV1 360 aa20.66■□□□□ 0.9
SHKBP1-219ENST00000599575 PODXL2Q9NZ53 605 aa20.66■□□□□ 0.9
SHKBP1-219ENST00000599575 SLX4Q8IY92 1834 aa20.66■□□□□ 0.9
SHKBP1-219ENST00000599575 FKBP4Q02790 459 aaKnown RBP eCLIP20.65■□□□□ 0.9
SHKBP1-219ENST00000599575 LDHAL6AQ6ZMR3 332 aa20.65■□□□□ 0.9
SHKBP1-219ENST00000599575 RTFDC1Q9BY42 306 aaPredicted RBP20.65■□□□□ 0.9
SHKBP1-219ENST00000599575 TAOK3Q9H2K8 898 aa20.65■□□□□ 0.9
SHKBP1-219ENST00000599575 SUPT16HQ9Y5B9 1047 aaKnown RBP20.65■□□□□ 0.9
SHKBP1-219ENST00000599575 SNED1Q8TER0 1413 aa20.64■□□□□ 0.89
SHKBP1-219ENST00000599575 DPP8Q6V1X1 898 aaPredicted RBP20.64■□□□□ 0.89
SHKBP1-219ENST00000599575 RPAP2Q8IXW5 612 aaPredicted RBP20.64■□□□□ 0.89
SHKBP1-219ENST00000599575 MPNDQ8N594 471 aa20.64■□□□□ 0.89
SHKBP1-219ENST00000599575 XDHP47989 1333 aa20.63■□□□□ 0.89
SHKBP1-219ENST00000599575 SRGAP3O43295 1099 aa20.63■□□□□ 0.89
SHKBP1-219ENST00000599575 ATP8B2P98198 1209 aa20.63■□□□□ 0.89
SHKBP1-219ENST00000599575 COPRSQ9NQ92 184 aa20.63■□□□□ 0.89
SHKBP1-219ENST00000599575 ZNF219Q9P2Y4 722 aaPredicted RBP20.63■□□□□ 0.89
SHKBP1-219ENST00000599575 MINPP1Q9UNW1 487 aa20.63■□□□□ 0.89
SHKBP1-219ENST00000599575 UTRNP46939 3433 aa20.62■□□□□ 0.89
SHKBP1-219ENST00000599575 MROH5Q6ZUA9 1318 aa20.62■□□□□ 0.89
SHKBP1-219ENST00000599575 NFKBIEO00221 500 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms