RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 RASSF10A6NK89 507 aa17.65■□□□□ 0.42
TRIM28-211ENST00000597968 HCLS1P14317 486 aaPredicted RBP17.65■□□□□ 0.42
TRIM28-211ENST00000597968 KRT24Q2M2I5 525 aa17.65■□□□□ 0.42
TRIM28-211ENST00000597968 MBIPQ9NS73 344 aa17.65■□□□□ 0.42
TRIM28-211ENST00000597968 TNIP1Q15025 636 aa17.64■□□□□ 0.41
TRIM28-211ENST00000597968 AOC3Q16853 763 aa17.64■□□□□ 0.41
TRIM28-211ENST00000597968 ADARB2Q9NS39 739 aaKnown RBP17.64■□□□□ 0.41
TRIM28-211ENST00000597968 MKRN1Q9UHC7 482 aaKnown RBP17.64■□□□□ 0.41
TRIM28-211ENST00000597968 TCERG1O14776 1098 aaKnown RBP17.63■□□□□ 0.41
TRIM28-211ENST00000597968 NCBP3Q53F19 620 aaKnown RBP17.63■□□□□ 0.41
TRIM28-211ENST00000597968 MAP1SQ66K74 1059 aaPredicted RBP17.63■□□□□ 0.41
TRIM28-211ENST00000597968 GPRC5DQ9NZD1 345 aa17.63■□□□□ 0.41
TRIM28-211ENST00000597968 APAF1O14727 1248 aa17.62■□□□□ 0.41
TRIM28-211ENST00000597968 CXCL9Q07325 125 aa17.62■□□□□ 0.41
TRIM28-211ENST00000597968 GOLGA2Q08379 1002 aa17.62■□□□□ 0.41
TRIM28-211ENST00000597968 CIAPIN1Q6FI81 312 aa17.62■□□□□ 0.41
TRIM28-211ENST00000597968 TNS4Q8IZW8 715 aa17.62■□□□□ 0.41
TRIM28-211ENST00000597968 ZC3H15Q8WU90 426 aaKnown RBP17.62■□□□□ 0.41
TRIM28-211ENST00000597968 EPS15P42566 896 aa17.61■□□□□ 0.41
TRIM28-211ENST00000597968 DEFB115Q30KQ5 88 aa17.61■□□□□ 0.41
TRIM28-211ENST00000597968 ZBTB38Q8NAP3 1195 aaPredicted RBP17.61■□□□□ 0.41
TRIM28-211ENST00000597968 LAMB2P55268 1798 aa17.61■□□□□ 0.41
TRIM28-211ENST00000597968 DDX58O95786 925 aaKnown RBP17.6■□□□□ 0.41
TRIM28-211ENST00000597968 CCDC27Q2M243 656 aa17.6■□□□□ 0.41
TRIM28-211ENST00000597968 RIC3Q7Z5B4 369 aa17.6■□□□□ 0.41
TRIM28-211ENST00000597968 CCDC191Q8NCU4 936 aa17.6■□□□□ 0.41
TRIM28-211ENST00000597968 FAM89AQ96GI7 184 aa17.6■□□□□ 0.41
TRIM28-211ENST00000597968 PRDM10Q9NQV6 1147 aa17.6■□□□□ 0.41
TRIM28-211ENST00000597968 PGAP2Q9UHJ9 254 aa17.6■□□□□ 0.41
TRIM28-211ENST00000597968 LRRC37AA6NMS7 1700 aa17.6■□□□□ 0.41
TRIM28-211ENST00000597968 LTBP1Q14766 1721 aa17.59■□□□□ 0.41
TRIM28-211ENST00000597968 IRS4O14654 1257 aaPredicted RBP17.59■□□□□ 0.41
TRIM28-211ENST00000597968 VEGFBP49765 207 aa17.59■□□□□ 0.41
TRIM28-211ENST00000597968 CCDC30Q5VVM6 783 aa17.59■□□□□ 0.41
TRIM28-211ENST00000597968 DPF2Q92785 391 aa17.59■□□□□ 0.41
TRIM28-211ENST00000597968 AIDAQ96BJ3 306 aa17.59■□□□□ 0.41
TRIM28-211ENST00000597968 EYA3Q99504 573 aa17.59■□□□□ 0.41
TRIM28-211ENST00000597968 ATP5J2-PTCD1G3V325 749 aa17.58■□□□□ 0.4
TRIM28-211ENST00000597968 ECE1P42892 770 aa17.58■□□□□ 0.4
TRIM28-211ENST00000597968 MAP2K1Q02750 393 aaPredicted RBP17.58■□□□□ 0.4
TRIM28-211ENST00000597968 WASHC4Q2M389 1173 aa17.58■□□□□ 0.4
TRIM28-211ENST00000597968 CTCFP49711 727 aaPredicted RBP17.57■□□□□ 0.4
TRIM28-211ENST00000597968 RPS8P62241 208 aaKnown RBP17.57■□□□□ 0.4
TRIM28-211ENST00000597968 HHIPL1Q96JK4 782 aa17.57■□□□□ 0.4
TRIM28-211ENST00000597968 BCL2L13Q9BXK5 485 aa17.57■□□□□ 0.4
TRIM28-211ENST00000597968 WBP1LQ9NX94 342 aa17.57■□□□□ 0.4
TRIM28-211ENST00000597968 PODXL2Q9NZ53 605 aa17.57■□□□□ 0.4
TRIM28-211ENST00000597968 DDX60Q8IY21 1712 aaKnown RBP17.57■□□□□ 0.4
TRIM28-211ENST00000597968 PCCAP05165 728 aaPredicted RBP17.56■□□□□ 0.4
TRIM28-211ENST00000597968 RPS12P25398 132 aaKnown RBP17.56■□□□□ 0.4
TRIM28-211ENST00000597968 GMPSP49915 693 aaPredicted RBP17.56■□□□□ 0.4
TRIM28-211ENST00000597968 CELF1Q92879 486 aaKnown RBP17.56■□□□□ 0.4
TRIM28-211ENST00000597968 ABT1Q9ULW3 272 aaKnown RBP17.56■□□□□ 0.4
TRIM28-211ENST00000597968 NSFL1CQ9UNZ2 370 aaKnown RBP17.56■□□□□ 0.4
TRIM28-211ENST00000597968 WDR33Q9C0J8 1336 aaKnown RBP17.55■□□□□ 0.4
TRIM28-211ENST00000597968 DUOX1Q9NRD9 1551 aa17.55■□□□□ 0.4
TRIM28-211ENST00000597968 H7C1D1 291 aa17.55■□□□□ 0.4
TRIM28-211ENST00000597968 CCDC152Q4G0S7 254 aa17.55■□□□□ 0.4
TRIM28-211ENST00000597968 SLC51AQ86UW1 340 aa17.55■□□□□ 0.4
TRIM28-211ENST00000597968 METTL22Q9BUU2 404 aaPredicted RBP17.55■□□□□ 0.4
TRIM28-211ENST00000597968 CWC25Q9NXE8 425 aaPredicted RBP17.55■□□□□ 0.4
TRIM28-211ENST00000597968 PDE8AO60658 829 aa17.54■□□□□ 0.4
TRIM28-211ENST00000597968 PHAXQ9H814 394 aaKnown RBP17.54■□□□□ 0.4
TRIM28-211ENST00000597968 TLL2Q9Y6L7 1015 aa17.54■□□□□ 0.4
TRIM28-211ENST00000597968 IL16Q14005 1332 aa17.53■□□□□ 0.4
TRIM28-211ENST00000597968 YDJCA8MPS7 323 aa17.53■□□□□ 0.4
TRIM28-211ENST00000597968 FOXN1O15353 648 aa17.53■□□□□ 0.4
TRIM28-211ENST00000597968 RAD17O75943 681 aa17.53■□□□□ 0.4
TRIM28-211ENST00000597968 CDC37L1Q7L3B6 337 aa17.53■□□□□ 0.4
TRIM28-211ENST00000597968 C8orf58Q8NAV2 365 aa17.53■□□□□ 0.4
TRIM28-211ENST00000597968 MYD88Q99836 296 aa17.53■□□□□ 0.4
TRIM28-211ENST00000597968 CNOT7Q9UIV1 285 aaKnown RBP17.53■□□□□ 0.4
TRIM28-211ENST00000597968 C6orf229H3BNL8 230 aa17.52■□□□□ 0.4
TRIM28-211ENST00000597968 MAP2K2P36507 400 aa17.52■□□□□ 0.4
TRIM28-211ENST00000597968 CST9Q5W186 159 aa17.52■□□□□ 0.4
TRIM28-211ENST00000597968 KSR2Q6VAB6 950 aa17.52■□□□□ 0.4
TRIM28-211ENST00000597968 TBC1D16Q8TBP0 767 aa17.52■□□□□ 0.4
TRIM28-211ENST00000597968 STK31Q9BXU1 1019 aa17.52■□□□□ 0.4
TRIM28-211ENST00000597968 ZC3H12CQ9C0D7 883 aaKnown RBP17.52■□□□□ 0.4
TRIM28-211ENST00000597968 POLLQ9UGP5 575 aa17.52■□□□□ 0.4
TRIM28-211ENST00000597968 ELL2O00472 640 aaPredicted RBP17.51■□□□□ 0.39
TRIM28-211ENST00000597968 ZNF609O15014 1411 aa17.51■□□□□ 0.39
TRIM28-211ENST00000597968 ZEB1P37275 1124 aaPredicted RBP17.51■□□□□ 0.39
TRIM28-211ENST00000597968 GPSM2P81274 684 aa17.51■□□□□ 0.39
TRIM28-211ENST00000597968 NEXNQ0ZGT2 675 aa17.51■□□□□ 0.39
TRIM28-211ENST00000597968 THSD7BQ9C0I4 1608 aa17.5■□□□□ 0.39
TRIM28-211ENST00000597968 SAPCD2Q86UD0 394 aa17.5■□□□□ 0.39
TRIM28-211ENST00000597968 CAPNS2Q96L46 248 aa17.5■□□□□ 0.39
TRIM28-211ENST00000597968 BEGAINQ9BUH8 593 aa17.5■□□□□ 0.39
TRIM28-211ENST00000597968 PSMD14O00487 310 aa17.49■□□□□ 0.39
TRIM28-211ENST00000597968 ECE2O60344 883 aa17.49■□□□□ 0.39
TRIM28-211ENST00000597968 HIRAP54198 1017 aaPredicted RBP17.49■□□□□ 0.39
TRIM28-211ENST00000597968 RTL5Q5HYW3 569 aaPredicted RBP17.49■□□□□ 0.39
TRIM28-211ENST00000597968 WWC1Q8IX03 1113 aa17.49■□□□□ 0.39
TRIM28-211ENST00000597968 MICALL2Q8IY33 904 aa17.49■□□□□ 0.39
TRIM28-211ENST00000597968 GPR101Q96P66 508 aaPredicted RBP17.49■□□□□ 0.39
TRIM28-211ENST00000597968 CDC5LQ99459 802 aaKnown RBP17.49■□□□□ 0.39
TRIM28-211ENST00000597968 GGA1Q9UJY5 639 aa17.49■□□□□ 0.39
TRIM28-211ENST00000597968 MAP3K2Q9Y2U5 619 aa17.49■□□□□ 0.39
TRIM28-211ENST00000597968 TRPM7Q96QT4 1865 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms