RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 CCDC85AQ96PX6 553 aaPredicted RBP18.93■□□□□ 0.62
TRIM28-207ENST00000597136 PDE8AO60658 829 aa18.93■□□□□ 0.62
TRIM28-207ENST00000597136 MS4A1P11836 297 aa18.93■□□□□ 0.62
TRIM28-207ENST00000597136 RLBP1P12271 317 aa18.93■□□□□ 0.62
TRIM28-207ENST00000597136 SF3B3Q15393 1217 aaKnown RBP18.93■□□□□ 0.62
TRIM28-207ENST00000597136 PRPF40BQ6NWY9 871 aaKnown RBP18.93■□□□□ 0.62
TRIM28-207ENST00000597136 OLFM4Q6UX06 510 aa18.93■□□□□ 0.62
TRIM28-207ENST00000597136 DZIP1LQ8IYY4 767 aaKnown RBP18.93■□□□□ 0.62
TRIM28-207ENST00000597136 CNKSR1Q969H4 720 aa18.93■□□□□ 0.62
TRIM28-207ENST00000597136 DICER1Q9UPY3 1922 aaKnown RBP18.92■□□□□ 0.62
TRIM28-207ENST00000597136 GRM8O00222 908 aa18.92■□□□□ 0.62
TRIM28-207ENST00000597136 C21orf2O43822 256 aa18.92■□□□□ 0.62
TRIM28-207ENST00000597136 NBPF7P0C2Y1 421 aaPredicted RBP18.92■□□□□ 0.62
TRIM28-207ENST00000597136 IRX6P78412 446 aaPredicted RBP18.92■□□□□ 0.62
TRIM28-207ENST00000597136 PANK1Q8TE04 598 aa18.92■□□□□ 0.62
TRIM28-207ENST00000597136 C9orf78Q9NZ63 289 aaPredicted RBP18.92■□□□□ 0.62
TRIM28-207ENST00000597136 DCAF8L1A6NGE4 600 aa18.91■□□□□ 0.62
TRIM28-207ENST00000597136 FTSJ3Q8IY81 847 aaKnown RBP18.91■□□□□ 0.62
TRIM28-207ENST00000597136 USP44Q9H0E7 712 aa18.91■□□□□ 0.62
TRIM28-207ENST00000597136 ABCC4O15439 1325 aa18.91■□□□□ 0.62
TRIM28-207ENST00000597136 ALDH1B1P30837 517 aa18.9■□□□□ 0.62
TRIM28-207ENST00000597136 EPHA10Q5JZY3 1008 aa18.9■□□□□ 0.62
TRIM28-207ENST00000597136 C7orf43Q8WVR3 580 aa18.9■□□□□ 0.62
TRIM28-207ENST00000597136 RBM17Q96I25 401 aaKnown RBP18.9■□□□□ 0.62
TRIM28-207ENST00000597136 CRAMP1Q96RY5 1269 aa18.9■□□□□ 0.62
TRIM28-207ENST00000597136 SEC31BQ9NQW1 1179 aa18.9■□□□□ 0.62
TRIM28-207ENST00000597136 NEFLP07196 543 aa18.89■□□□□ 0.62
TRIM28-207ENST00000597136 ARHGAP27Q6ZUM4 889 aa18.89■□□□□ 0.62
TRIM28-207ENST00000597136 TTLL11Q8NHH1 800 aa18.89■□□□□ 0.62
TRIM28-207ENST00000597136 KAZALD1Q96I82 304 aa18.89■□□□□ 0.62
TRIM28-207ENST00000597136 GRIN3BO60391 1043 aa18.89■□□□□ 0.61
TRIM28-207ENST00000597136 CCT4P50991 539 aaKnown RBP18.89■□□□□ 0.61
TRIM28-207ENST00000597136 FOXO4P98177 505 aa18.89■□□□□ 0.61
TRIM28-207ENST00000597136 INTS3Q68E01 1043 aaKnown RBP18.89■□□□□ 0.61
TRIM28-207ENST00000597136 DDX46Q7L014 1031 aaKnown RBP18.89■□□□□ 0.61
TRIM28-207ENST00000597136 UTYO14607 1347 aa18.88■□□□□ 0.61
TRIM28-207ENST00000597136 CTSWP56202 376 aa18.88■□□□□ 0.61
TRIM28-207ENST00000597136 TMEM57Q8N5G2 664 aa18.88■□□□□ 0.61
TRIM28-207ENST00000597136 CELF1Q92879 486 aaKnown RBP18.88■□□□□ 0.61
TRIM28-207ENST00000597136 SUCLG2Q96I99 432 aa18.88■□□□□ 0.61
TRIM28-207ENST00000597136 PLA2G12BQ9BX93 195 aa18.88■□□□□ 0.61
TRIM28-207ENST00000597136 CSF1RP07333 972 aa18.86■□□□□ 0.61
TRIM28-207ENST00000597136 HSP90B1P14625 803 aaKnown RBP18.86■□□□□ 0.61
TRIM28-207ENST00000597136 GREM2Q9H772 168 aa18.86■□□□□ 0.61
TRIM28-207ENST00000597136 COG6Q9Y2V7 657 aa18.86■□□□□ 0.61
TRIM28-207ENST00000597136 LRRC37AA6NMS7 1700 aa18.86■□□□□ 0.61
TRIM28-207ENST00000597136 GRAPQ13588 217 aa18.85■□□□□ 0.61
TRIM28-207ENST00000597136 CCDC152Q4G0S7 254 aa18.85■□□□□ 0.61
TRIM28-207ENST00000597136 GRAPLQ8TC17 118 aaPredicted RBP18.85■□□□□ 0.61
TRIM28-207ENST00000597136 CRBNQ96SW2 442 aa18.85■□□□□ 0.61
TRIM28-207ENST00000597136 A0A1B0GUL6 1792 aa18.85■□□□□ 0.61
TRIM28-207ENST00000597136 MVPQ14764 893 aaKnown RBP18.85■□□□□ 0.61
TRIM28-207ENST00000597136 MEIS3Q99687 375 aa18.85■□□□□ 0.61
TRIM28-207ENST00000597136 PPEF1O14829 653 aaPredicted RBP18.84■□□□□ 0.61
TRIM28-207ENST00000597136 PRELPP51888 382 aa18.84■□□□□ 0.61
TRIM28-207ENST00000597136 RASSF7Q02833 373 aa18.84■□□□□ 0.61
TRIM28-207ENST00000597136 LMBR1LQ6UX01 489 aa18.84■□□□□ 0.61
TRIM28-207ENST00000597136 ITPRIPQ8IWB1 547 aa18.84■□□□□ 0.61
TRIM28-207ENST00000597136 NFKBIEO00221 500 aa18.83■□□□□ 0.6
TRIM28-207ENST00000597136 BBOX1O75936 387 aa18.83■□□□□ 0.6
TRIM28-207ENST00000597136 RPS8P62241 208 aaKnown RBP18.83■□□□□ 0.6
TRIM28-207ENST00000597136 FAM161AQ3B820 660 aa18.83■□□□□ 0.6
TRIM28-207ENST00000597136 EXOC6Q8TAG9 804 aa18.83■□□□□ 0.6
TRIM28-207ENST00000597136 BICC1Q9H694 974 aaKnown RBP18.82■□□□□ 0.6
TRIM28-207ENST00000597136 SNED1Q8TER0 1413 aa18.82■□□□□ 0.6
TRIM28-207ENST00000597136 ANKRD44Q8N8A2 993 aa18.81■□□□□ 0.6
TRIM28-207ENST00000597136 CHMP3Q9Y3E7 222 aa18.81■□□□□ 0.6
TRIM28-207ENST00000597136 ATP6V0A2Q9Y487 856 aa18.81■□□□□ 0.6
TRIM28-207ENST00000597136 LTBP1Q14766 1721 aa18.81■□□□□ 0.6
TRIM28-207ENST00000597136 ITGA6P23229 1130 aa18.81■□□□□ 0.6
TRIM28-207ENST00000597136 SP8Q8IXZ3 490 aa18.81■□□□□ 0.6
TRIM28-207ENST00000597136 DDX19BQ9UMR2 479 aa18.81■□□□□ 0.6
TRIM28-207ENST00000597136 RTL9Q8NET4 1388 aa18.8■□□□□ 0.6
TRIM28-207ENST00000597136 UBTFL1P0CB47 393 aaPredicted RBP18.8■□□□□ 0.6
TRIM28-207ENST00000597136 CCDC93Q567U6 631 aa18.8■□□□□ 0.6
TRIM28-207ENST00000597136 ZNF594Q96JF6 807 aaPredicted RBP18.8■□□□□ 0.6
TRIM28-207ENST00000597136 TIAM2Q8IVF5 1701 aa18.79■□□□□ 0.6
TRIM28-207ENST00000597136 LRRFIP2Q9Y608 721 aaKnown RBP18.79■□□□□ 0.6
TRIM28-207ENST00000597136 ZBTB7BO15156 539 aaPredicted RBP18.78■□□□□ 0.6
TRIM28-207ENST00000597136 RABL6Q3YEC7 729 aaPredicted RBP18.78■□□□□ 0.6
TRIM28-207ENST00000597136 ANKRD18AQ8IVF6 992 aa18.78■□□□□ 0.6
TRIM28-207ENST00000597136 SOGA3Q5TF21 947 aa18.77■□□□□ 0.6
TRIM28-207ENST00000597136 DUOX1Q9NRD9 1551 aa18.77■□□□□ 0.6
TRIM28-207ENST00000597136 ANKRD18BA2A2Z9 1011 aa18.76■□□□□ 0.59
TRIM28-207ENST00000597136 WTIPA6NIX2 430 aaPredicted RBP18.76■□□□□ 0.59
TRIM28-207ENST00000597136 IFIT5Q13325 482 aaKnown RBP18.76■□□□□ 0.59
TRIM28-207ENST00000597136 ERICH6BQ5W0A0 696 aa18.76■□□□□ 0.59
TRIM28-207ENST00000597136 RTKN2Q8IZC4 609 aa18.76■□□□□ 0.59
TRIM28-207ENST00000597136 CDC5LQ99459 802 aaKnown RBP18.76■□□□□ 0.59
TRIM28-207ENST00000597136 GNAI3P08754 354 aa18.76■□□□□ 0.59
TRIM28-207ENST00000597136 GPSM2P81274 684 aa18.76■□□□□ 0.59
TRIM28-207ENST00000597136 FKBP4Q02790 459 aaKnown RBP eCLIP18.76■□□□□ 0.59
TRIM28-207ENST00000597136 CCDC57Q2TAC2 916 aa18.76■□□□□ 0.59
TRIM28-207ENST00000597136 C9orf131Q5VYM1 1079 aa18.76■□□□□ 0.59
TRIM28-207ENST00000597136 CC2D2BQ6DHV5 1058 aa18.76■□□□□ 0.59
TRIM28-207ENST00000597136 MPNDQ8N594 471 aa18.76■□□□□ 0.59
TRIM28-207ENST00000597136 TAOK3Q9H2K8 898 aa18.76■□□□□ 0.59
TRIM28-207ENST00000597136 CHMP4BQ9H444 224 aaKnown RBP18.76■□□□□ 0.59
TRIM28-207ENST00000597136 ZNF277Q9NRM2 450 aaPredicted RBP18.76■□□□□ 0.59
TRIM28-207ENST00000597136 ZBTB40Q9NUA8 1239 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms