RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 FKBP4Q02790 459 aaKnown RBP eCLIP21.9■■□□□ 1.1
SHKBP1-212ENST00000596163 UBE3BQ7Z3V4 1068 aa21.9■■□□□ 1.1
SHKBP1-212ENST00000596163 SP8Q8IXZ3 490 aa21.9■■□□□ 1.1
SHKBP1-212ENST00000596163 ATP6V0A2Q9Y487 856 aa21.9■■□□□ 1.1
SHKBP1-212ENST00000596163 SLX4Q8IY92 1834 aa21.9■■□□□ 1.1
SHKBP1-212ENST00000596163 RARSP54136 660 aaKnown RBP21.89■■□□□ 1.09
SHKBP1-212ENST00000596163 ZC3H4Q9UPT8 1303 aaKnown RBP21.88■■□□□ 1.09
SHKBP1-212ENST00000596163 PSMD1Q99460 953 aa21.88■■□□□ 1.09
SHKBP1-212ENST00000596163 PLA2G12BQ9BX93 195 aa21.88■■□□□ 1.09
SHKBP1-212ENST00000596163 C9orf78Q9NZ63 289 aaPredicted RBP21.88■■□□□ 1.09
SHKBP1-212ENST00000596163 CTSWP56202 376 aa21.87■■□□□ 1.09
SHKBP1-212ENST00000596163 RPS8P62241 208 aaKnown RBP21.87■■□□□ 1.09
SHKBP1-212ENST00000596163 API5Q9BZZ5 524 aaKnown RBP21.87■■□□□ 1.09
SHKBP1-212ENST00000596163 OLFM4Q6UX06 510 aa21.86■■□□□ 1.09
SHKBP1-212ENST00000596163 NOB1Q9ULX3 412 aaKnown RBP21.86■■□□□ 1.09
SHKBP1-212ENST00000596163 KIF16BQ96L93 1317 aa21.85■■□□□ 1.09
SHKBP1-212ENST00000596163 GRM8O00222 908 aa21.85■■□□□ 1.09
SHKBP1-212ENST00000596163 IPO8O15397 1037 aaKnown RBP21.85■■□□□ 1.09
SHKBP1-212ENST00000596163 CASP7P55210 303 aa21.85■■□□□ 1.09
SHKBP1-212ENST00000596163 SUPT20HQ8NEM7 779 aa21.85■■□□□ 1.09
SHKBP1-212ENST00000596163 TTLL11Q8NHH1 800 aa21.85■■□□□ 1.09
SHKBP1-212ENST00000596163 GPBP1L1Q9HC44 474 aaPredicted RBP21.85■■□□□ 1.09
SHKBP1-212ENST00000596163 MPNDQ8N594 471 aa21.84■■□□□ 1.09
SHKBP1-212ENST00000596163 ARHGAP45Q92619 1136 aa21.84■■□□□ 1.09
SHKBP1-212ENST00000596163 CELF1Q92879 486 aaKnown RBP21.84■■□□□ 1.09
SHKBP1-212ENST00000596163 CDC5LQ99459 802 aaKnown RBP21.84■■□□□ 1.09
SHKBP1-212ENST00000596163 PRELPP51888 382 aa21.83■■□□□ 1.09
SHKBP1-212ENST00000596163 DPP8Q6V1X1 898 aaPredicted RBP21.83■■□□□ 1.09
SHKBP1-212ENST00000596163 ANKRD18AQ8IVF6 992 aa21.83■■□□□ 1.09
SHKBP1-212ENST00000596163 CCDC85AQ96PX6 553 aaPredicted RBP21.83■■□□□ 1.09
SHKBP1-212ENST00000596163 VPS33BQ9H267 617 aa21.83■■□□□ 1.09
SHKBP1-212ENST00000596163 ZNF277Q9NRM2 450 aaPredicted RBP21.83■■□□□ 1.09
SHKBP1-212ENST00000596163 KDM2BQ8NHM5 1336 aa21.82■■□□□ 1.08
SHKBP1-212ENST00000596163 IARSP41252 1262 aaKnown RBP21.82■■□□□ 1.08
SHKBP1-212ENST00000596163 CCT4P50991 539 aaKnown RBP21.82■■□□□ 1.08
SHKBP1-212ENST00000596163 DPY19L2Q6NUT2 758 aa21.82■■□□□ 1.08
SHKBP1-212ENST00000596163 SEC31BQ9NQW1 1179 aa21.82■■□□□ 1.08
SHKBP1-212ENST00000596163 DDX60Q8IY21 1712 aaKnown RBP21.82■■□□□ 1.08
SHKBP1-212ENST00000596163 CSF1RP07333 972 aa21.81■■□□□ 1.08
SHKBP1-212ENST00000596163 ZNF526Q8TF50 670 aaPredicted RBP21.81■■□□□ 1.08
SHKBP1-212ENST00000596163 JDP2Q8WYK2 163 aa21.81■■□□□ 1.08
SHKBP1-212ENST00000596163 RTL9Q8NET4 1388 aa21.81■■□□□ 1.08
SHKBP1-212ENST00000596163 RTFDC1Q9BY42 306 aaPredicted RBP21.8■■□□□ 1.08
SHKBP1-212ENST00000596163 GREM2Q9H772 168 aa21.8■■□□□ 1.08
SHKBP1-212ENST00000596163 CACNA1SQ13698 1873 aa21.79■■□□□ 1.08
SHKBP1-212ENST00000596163 FER1L6Q2WGJ9 1857 aa21.79■■□□□ 1.08
SHKBP1-212ENST00000596163 NSFL1CQ9UNZ2 370 aaKnown RBP21.79■■□□□ 1.08
SHKBP1-212ENST00000596163 LAMB2P55268 1798 aa21.79■■□□□ 1.08
SHKBP1-212ENST00000596163 IGHMBP2P38935 993 aaKnown RBP21.78■■□□□ 1.08
SHKBP1-212ENST00000596163 LARGE2Q8N3Y3 721 aa21.78■■□□□ 1.08
SHKBP1-212ENST00000596163 SNED1Q8TER0 1413 aa21.78■■□□□ 1.08
SHKBP1-212ENST00000596163 UTYO14607 1347 aa21.78■■□□□ 1.08
SHKBP1-212ENST00000596163 ANKRD18BA2A2Z9 1011 aa21.77■■□□□ 1.08
SHKBP1-212ENST00000596163 GLTPD2A6NH11 291 aa21.77■■□□□ 1.08
SHKBP1-212ENST00000596163 BCAR3O75815 825 aa21.77■■□□□ 1.08
SHKBP1-212ENST00000596163 ITGA6P23229 1130 aa21.77■■□□□ 1.08
SHKBP1-212ENST00000596163 FRAT1Q92837 279 aaPredicted RBP21.77■■□□□ 1.08
SHKBP1-212ENST00000596163 BSDC1Q9NW68 430 aaPredicted RBP21.77■■□□□ 1.08
SHKBP1-212ENST00000596163 HDAC5Q9UQL6 1122 aa21.77■■□□□ 1.08
SHKBP1-212ENST00000596163 CHMP3Q9Y3E7 222 aa21.77■■□□□ 1.08
SHKBP1-212ENST00000596163 PPIP5K2O43314 1243 aa21.76■■□□□ 1.07
SHKBP1-212ENST00000596163 FOXO4P98177 505 aa21.76■■□□□ 1.07
SHKBP1-212ENST00000596163 IFIT5Q13325 482 aaKnown RBP21.76■■□□□ 1.07
SHKBP1-212ENST00000596163 SBF1O95248 1867 aa21.75■■□□□ 1.07
SHKBP1-212ENST00000596163 NBPF7P0C2Y1 421 aaPredicted RBP21.75■■□□□ 1.07
SHKBP1-212ENST00000596163 LMBR1LQ6UX01 489 aa21.75■■□□□ 1.07
SHKBP1-212ENST00000596163 EYA3Q99504 573 aa21.75■■□□□ 1.07
SHKBP1-212ENST00000596163 MPHOSPH8Q99549 860 aa21.75■■□□□ 1.07
SHKBP1-212ENST00000596163 PODXL2Q9NZ53 605 aa21.75■■□□□ 1.07
SHKBP1-212ENST00000596163 ANKIB1Q9P2G1 1089 aa21.75■■□□□ 1.07
SHKBP1-212ENST00000596163 C6orf229H3BNL8 230 aa21.74■■□□□ 1.07
SHKBP1-212ENST00000596163 EIF6P56537 245 aaKnown RBP21.74■■□□□ 1.07
SHKBP1-212ENST00000596163 GPSM2P81274 684 aa21.74■■□□□ 1.07
SHKBP1-212ENST00000596163 CCDC57Q2TAC2 916 aa21.74■■□□□ 1.07
SHKBP1-212ENST00000596163 FAM161AQ3B820 660 aa21.74■■□□□ 1.07
SHKBP1-212ENST00000596163 ZKSCAN2Q63HK3 967 aa21.74■■□□□ 1.07
SHKBP1-212ENST00000596163 ATF7IPQ6VMQ6 1270 aa21.74■■□□□ 1.07
SHKBP1-212ENST00000596163 NIM1KQ8IY84 436 aa21.74■■□□□ 1.07
SHKBP1-212ENST00000596163 USP44Q9H0E7 712 aa21.74■■□□□ 1.07
SHKBP1-212ENST00000596163 SLC51AQ86UW1 340 aa21.73■■□□□ 1.07
SHKBP1-212ENST00000596163 SUCLG2Q96I99 432 aa21.73■■□□□ 1.07
SHKBP1-212ENST00000596163 FZD9O00144 591 aa21.72■■□□□ 1.07
SHKBP1-212ENST00000596163 KIAA2012Q0VF49 1180 aa21.72■■□□□ 1.07
SHKBP1-212ENST00000596163 AOC3Q16853 763 aa21.72■■□□□ 1.07
SHKBP1-212ENST00000596163 WASHC4Q2M389 1173 aa21.72■■□□□ 1.07
SHKBP1-212ENST00000596163 TAF7LQ5H9L4 462 aa21.72■■□□□ 1.07
SHKBP1-212ENST00000596163 EPHA10Q5JZY3 1008 aa21.72■■□□□ 1.07
SHKBP1-212ENST00000596163 INTS3Q68E01 1043 aaKnown RBP21.72■■□□□ 1.07
SHKBP1-212ENST00000596163 GGA1Q9UJY5 639 aa21.72■■□□□ 1.07
SHKBP1-212ENST00000596163 XDHP47989 1333 aa21.72■■□□□ 1.07
SHKBP1-212ENST00000596163 ATP2B4P23634 1241 aa21.71■■□□□ 1.07
SHKBP1-212ENST00000596163 TBC1D16Q8TBP0 767 aa21.71■■□□□ 1.07
SHKBP1-212ENST00000596163 ANKRD2Q9GZV1 360 aa21.71■■□□□ 1.07
SHKBP1-212ENST00000596163 MINPP1Q9UNW1 487 aa21.71■■□□□ 1.07
SHKBP1-212ENST00000596163 UBTFL1P0CB47 393 aaPredicted RBP21.7■■□□□ 1.06
SHKBP1-212ENST00000596163 TRIM27P14373 513 aa21.7■■□□□ 1.06
SHKBP1-212ENST00000596163 C16orf71Q8IYS4 520 aaPredicted RBP21.7■■□□□ 1.06
SHKBP1-212ENST00000596163 ZC3H12CQ9C0D7 883 aaKnown RBP21.7■■□□□ 1.06
SHKBP1-212ENST00000596163 RRAGCQ9HB90 399 aa21.7■■□□□ 1.06
SHKBP1-212ENST00000596163 NMRK2Q9NPI5 230 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms