RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 DNAAF4Q8WXU2 420 aa20.7■□□□□ 0.9
TRIM28-206ENST00000595974 ZNF277Q9NRM2 450 aaPredicted RBP20.7■□□□□ 0.9
TRIM28-206ENST00000595974 CDHR2Q9BYE9 1310 aa20.7■□□□□ 0.9
TRIM28-206ENST00000595974 NEURL1BA8MQ27 555 aa20.69■□□□□ 0.9
TRIM28-206ENST00000595974 PDE8AO60658 829 aa20.68■□□□□ 0.9
TRIM28-206ENST00000595974 IARSP41252 1262 aaKnown RBP20.68■□□□□ 0.9
TRIM28-206ENST00000595974 CWF19L2Q2TBE0 894 aaKnown RBP20.68■□□□□ 0.9
TRIM28-206ENST00000595974 DPY19L2Q6NUT2 758 aa20.68■□□□□ 0.9
TRIM28-206ENST00000595974 SP8Q8IXZ3 490 aa20.67■□□□□ 0.9
TRIM28-206ENST00000595974 LINS1Q8NG48 757 aa20.67■□□□□ 0.9
TRIM28-206ENST00000595974 COL4A1P02462 1669 aa20.67■□□□□ 0.9
TRIM28-206ENST00000595974 SLC51AQ86UW1 340 aa20.66■□□□□ 0.9
TRIM28-206ENST00000595974 SCN4AP35499 1836 aa20.65■□□□□ 0.9
TRIM28-206ENST00000595974 CCDC152Q4G0S7 254 aa20.65■□□□□ 0.9
TRIM28-206ENST00000595974 CDCA7LQ96GN5 454 aa20.65■□□□□ 0.9
TRIM28-206ENST00000595974 LTBP1Q14766 1721 aa20.64■□□□□ 0.9
TRIM28-206ENST00000595974 COL4A5P29400 1685 aa20.64■□□□□ 0.9
TRIM28-206ENST00000595974 DUOX1Q9NRD9 1551 aa20.64■□□□□ 0.9
TRIM28-206ENST00000595974 TOMM70O94826 608 aa20.64■□□□□ 0.89
TRIM28-206ENST00000595974 GCKRQ14397 625 aa20.64■□□□□ 0.89
TRIM28-206ENST00000595974 TRMT2AQ8IZ69 625 aaKnown RBP20.64■□□□□ 0.89
TRIM28-206ENST00000595974 SUPT20HQ8NEM7 779 aa20.64■□□□□ 0.89
TRIM28-206ENST00000595974 CELF1Q92879 486 aaKnown RBP20.64■□□□□ 0.89
TRIM28-206ENST00000595974 VPS33BQ9H267 617 aa20.64■□□□□ 0.89
TRIM28-206ENST00000595974 RRAGCQ9HB90 399 aa20.64■□□□□ 0.89
TRIM28-206ENST00000595974 SPEF2Q9C093 1822 aa20.64■□□□□ 0.89
TRIM28-206ENST00000595974 CTSWP56202 376 aa20.63■□□□□ 0.89
TRIM28-206ENST00000595974 DPP8Q6V1X1 898 aaPredicted RBP20.63■□□□□ 0.89
TRIM28-206ENST00000595974 UBE3BQ7Z3V4 1068 aa20.63■□□□□ 0.89
TRIM28-206ENST00000595974 C16orf71Q8IYS4 520 aaPredicted RBP20.63■□□□□ 0.89
TRIM28-206ENST00000595974 JDP2Q8WYK2 163 aa20.63■□□□□ 0.89
TRIM28-206ENST00000595974 JARID2Q92833 1246 aaPredicted RBP20.63■□□□□ 0.89
TRIM28-206ENST00000595974 RTFDC1Q9BY42 306 aaPredicted RBP20.63■□□□□ 0.89
TRIM28-206ENST00000595974 F6X3S4 739 aa20.62■□□□□ 0.89
TRIM28-206ENST00000595974 H7C1W4 665 aa20.62■□□□□ 0.89
TRIM28-206ENST00000595974 VEGFAP15692 232 aaPredicted RBP20.62■□□□□ 0.89
TRIM28-206ENST00000595974 MPNDQ8N594 471 aa20.62■□□□□ 0.89
TRIM28-206ENST00000595974 FZD9O00144 591 aa20.61■□□□□ 0.89
TRIM28-206ENST00000595974 CT47B1P0C2W7 299 aaPredicted RBP20.61■□□□□ 0.89
TRIM28-206ENST00000595974 RPS8P62241 208 aaKnown RBP20.61■□□□□ 0.89
TRIM28-206ENST00000595974 BEND3Q5T5X7 828 aa20.61■□□□□ 0.89
TRIM28-206ENST00000595974 LARGE2Q8N3Y3 721 aa20.61■□□□□ 0.89
TRIM28-206ENST00000595974 RTL9Q8NET4 1388 aa20.6■□□□□ 0.89
TRIM28-206ENST00000595974 ZNF541Q9H0D2 1346 aa20.6■□□□□ 0.89
TRIM28-206ENST00000595974 PPIP5K2O43314 1243 aa20.6■□□□□ 0.89
TRIM28-206ENST00000595974 MRPL50Q8N5N7 158 aaKnown RBP20.6■□□□□ 0.89
TRIM28-206ENST00000595974 RBM46Q8TBY0 533 aaKnown RBP20.6■□□□□ 0.89
TRIM28-206ENST00000595974 PLA2G12BQ9BX93 195 aa20.6■□□□□ 0.89
TRIM28-206ENST00000595974 SEC31BQ9NQW1 1179 aa20.6■□□□□ 0.89
TRIM28-206ENST00000595974 PTPRCP08575 1304 aa20.59■□□□□ 0.89
TRIM28-206ENST00000595974 DDNO94850 711 aaPredicted RBP20.59■□□□□ 0.89
TRIM28-206ENST00000595974 CASP7P55210 303 aa20.59■□□□□ 0.89
TRIM28-206ENST00000595974 ALDH1L2Q3SY69 923 aa20.59■□□□□ 0.89
TRIM28-206ENST00000595974 NIM1KQ8IY84 436 aa20.59■□□□□ 0.89
TRIM28-206ENST00000595974 L3MBTL3Q96JM7 780 aaPredicted RBP20.59■□□□□ 0.89
TRIM28-206ENST00000595974 AOC3Q16853 763 aa20.58■□□□□ 0.89
TRIM28-206ENST00000595974 TTLL11Q8NHH1 800 aa20.58■□□□□ 0.89
TRIM28-206ENST00000595974 SSH1Q8WYL5 1049 aa20.58■□□□□ 0.89
TRIM28-206ENST00000595974 CDC5LQ99459 802 aaKnown RBP20.58■□□□□ 0.89
TRIM28-206ENST00000595974 POTECB2RU33 542 aa20.57■□□□□ 0.88
TRIM28-206ENST00000595974 ALDH1L1O75891 902 aa20.57■□□□□ 0.88
TRIM28-206ENST00000595974 EIF6P56537 245 aaKnown RBP20.57■□□□□ 0.88
TRIM28-206ENST00000595974 KIAA2012Q0VF49 1180 aa20.57■□□□□ 0.88
TRIM28-206ENST00000595974 ANKRD18AQ8IVF6 992 aa20.57■□□□□ 0.88
TRIM28-206ENST00000595974 CCDC85AQ96PX6 553 aaPredicted RBP20.57■□□□□ 0.88
TRIM28-206ENST00000595974 IQCA1LA6NCM1 817 aa20.56■□□□□ 0.88
TRIM28-206ENST00000595974 GPC2Q8N158 579 aa20.56■□□□□ 0.88
TRIM28-206ENST00000595974 NSFL1CQ9UNZ2 370 aaKnown RBP20.56■□□□□ 0.88
TRIM28-206ENST00000595974 FSTL1Q12841 308 aa20.55■□□□□ 0.88
TRIM28-206ENST00000595974 SLC4A10Q6U841 1118 aa20.55■□□□□ 0.88
TRIM28-206ENST00000595974 BCL2L13Q9BXK5 485 aa20.55■□□□□ 0.88
TRIM28-206ENST00000595974 SRCIN1Q9C0H9 1055 aa20.55■□□□□ 0.88
TRIM28-206ENST00000595974 GREM2Q9H772 168 aa20.55■□□□□ 0.88
TRIM28-206ENST00000595974 SMC4Q9NTJ3 1288 aa20.55■□□□□ 0.88
TRIM28-206ENST00000595974 GRM8O00222 908 aa20.54■□□□□ 0.88
TRIM28-206ENST00000595974 GPSM2P81274 684 aa20.54■□□□□ 0.88
TRIM28-206ENST00000595974 HNRNPUQ00839 825 aaKnown RBP eCLIP20.54■□□□□ 0.88
TRIM28-206ENST00000595974 PODXL2Q9NZ53 605 aa20.54■□□□□ 0.88
TRIM28-206ENST00000595974 HSPA6P17066 643 aa20.53■□□□□ 0.88
TRIM28-206ENST00000595974 SMC1BQ8NDV3 1235 aa20.53■□□□□ 0.88
TRIM28-206ENST00000595974 ZNRF3Q9ULT6 936 aa20.53■□□□□ 0.88
TRIM28-206ENST00000595974 CSF1RP07333 972 aa20.52■□□□□ 0.88
TRIM28-206ENST00000595974 FAM161AQ3B820 660 aa20.52■□□□□ 0.88
TRIM28-206ENST00000595974 EYA3Q99504 573 aa20.52■□□□□ 0.88
TRIM28-206ENST00000595974 C9orf78Q9NZ63 289 aaPredicted RBP20.52■□□□□ 0.88
TRIM28-206ENST00000595974 POLLQ9UGP5 575 aa20.52■□□□□ 0.88
TRIM28-206ENST00000595974 C6orf229H3BNL8 230 aa20.51■□□□□ 0.87
TRIM28-206ENST00000595974 WASHC4Q2M389 1173 aa20.51■□□□□ 0.87
TRIM28-206ENST00000595974 TBC1D16Q8TBP0 767 aa20.51■□□□□ 0.87
TRIM28-206ENST00000595974 BSDC1Q9NW68 430 aaPredicted RBP20.51■□□□□ 0.87
TRIM28-206ENST00000595974 ANKIB1Q9P2G1 1089 aa20.51■□□□□ 0.87
TRIM28-206ENST00000595974 HACL1Q9UJ83 578 aa20.51■□□□□ 0.87
TRIM28-206ENST00000595974 A0A1B0GUL6 1792 aa20.51■□□□□ 0.87
TRIM28-206ENST00000595974 XDHP47989 1333 aa20.51■□□□□ 0.87
TRIM28-206ENST00000595974 ADAMTSL1Q8N6G6 1762 aa20.5■□□□□ 0.87
TRIM28-206ENST00000595974 ITGA6P23229 1130 aa20.5■□□□□ 0.87
TRIM28-206ENST00000595974 IGHMBP2P38935 993 aaKnown RBP20.5■□□□□ 0.87
TRIM28-206ENST00000595974 BRPF1P55201 1214 aaPredicted RBP20.5■□□□□ 0.87
TRIM28-206ENST00000595974 TAF1DQ9H5J8 278 aaPredicted RBP20.5■□□□□ 0.87
TRIM28-206ENST00000595974 GGA1Q9UJY5 639 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms