RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, human

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIM28-204	ENST00000594806	FER1L6	Q2WGJ9	1857 aa		32.58	■■■□□ 2.81
TRIM28-204	ENST00000594806	BCAR3	O75815	825 aa		32.57	■■■□□ 2.8
TRIM28-204	ENST00000594806	CCT4	P50991	539 aa	Known RBP	32.57	■■■□□ 2.8
TRIM28-204	ENST00000594806	GRAP	Q13588	217 aa		32.57	■■■□□ 2.8
TRIM28-204	ENST00000594806	RTKN2	Q8IZC4	609 aa		32.57	■■■□□ 2.8
TRIM28-204	ENST00000594806	GRAPL	Q8TC17	118 aa	Predicted RBP	32.57	■■■□□ 2.8
TRIM28-204	ENST00000594806	TMX4	Q9H1E5	349 aa	Predicted RBP	32.57	■■■□□ 2.8
TRIM28-204	ENST00000594806	PPEF1	O14829	653 aa	Predicted RBP	32.56	■■■□□ 2.8
TRIM28-204	ENST00000594806	CTSW	P56202	376 aa		32.56	■■■□□ 2.8
TRIM28-204	ENST00000594806	ZNF219	Q9P2Y4	722 aa	Predicted RBP	32.56	■■■□□ 2.8
TRIM28-204	ENST00000594806	LTBP3	Q9NS15	1303 aa		32.55	■■■□□ 2.8
TRIM28-204	ENST00000594806	UTRN	P46939	3433 aa		32.54	■■■□□ 2.8
TRIM28-204	ENST00000594806	UTY	O14607	1347 aa		32.53	■■■□□ 2.8
TRIM28-204	ENST00000594806	SBF1	O95248	1867 aa		32.53	■■■□□ 2.8
TRIM28-204	ENST00000594806	YY1	P25490	414 aa		32.53	■■■□□ 2.8
TRIM28-204	ENST00000594806	TTLL11	Q8NHH1	800 aa		32.53	■■■□□ 2.8
TRIM28-204	ENST00000594806	ATP6V0A2	Q9Y487	856 aa		32.53	■■■□□ 2.8
TRIM28-204	ENST00000594806	RTL9	Q8NET4	1388 aa		32.53	■■■□□ 2.8
TRIM28-204	ENST00000594806	ATF7IP	Q6VMQ6	1270 aa		32.52	■■■□□ 2.8
TRIM28-204	ENST00000594806	SP8	Q8IXZ3	490 aa		32.52	■■■□□ 2.8
TRIM28-204	ENST00000594806	TAOK3	Q9H2K8	898 aa		32.52	■■■□□ 2.8
TRIM28-204	ENST00000594806	ZKSCAN2	Q63HK3	967 aa		32.51	■■■□□ 2.79
TRIM28-204	ENST00000594806	NFKBIE	O00221	500 aa		32.5	■■■□□ 2.79
TRIM28-204	ENST00000594806	RPS8	P62241	208 aa	Known RBP	32.5	■■■□□ 2.79
TRIM28-204	ENST00000594806	FRAT1	Q92837	279 aa	Predicted RBP	32.5	■■■□□ 2.79
TRIM28-204	ENST00000594806	TAF1	P21675	1872 aa		32.5	■■■□□ 2.79
TRIM28-204	ENST00000594806	CSF1R	P07333	972 aa		32.49	■■■□□ 2.79
TRIM28-204	ENST00000594806	LMNB1	P20700	586 aa		32.49	■■■□□ 2.79
TRIM28-204	ENST00000594806	CDC5L	Q99459	802 aa	Known RBP	32.49	■■■□□ 2.79
TRIM28-204	ENST00000594806	TRIM27	P14373	513 aa		32.48	■■■□□ 2.79
TRIM28-204	ENST00000594806	CELF1	Q92879	486 aa	Known RBP	32.48	■■■□□ 2.79
TRIM28-204	ENST00000594806	FKBP4	Q02790	459 aa	Known RBP eCLIP	32.47	■■■□□ 2.79
TRIM28-204	ENST00000594806	RASSF7	Q02833	373 aa		32.47	■■■□□ 2.79
TRIM28-204	ENST00000594806	CCDC88A	Q3V6T2	1871 aa		32.47	■■■□□ 2.79
TRIM28-204	ENST00000594806	INTS3	Q68E01	1043 aa	Known RBP	32.47	■■■□□ 2.79
TRIM28-204	ENST00000594806	PSMD1	Q99460	953 aa		32.47	■■■□□ 2.79
TRIM28-204	ENST00000594806	USP44	Q9H0E7	712 aa		32.46	■■■□□ 2.79
TRIM28-204	ENST00000594806	SEC31B	Q9NQW1	1179 aa		32.46	■■■□□ 2.79
TRIM28-204	ENST00000594806	HDAC5	Q9UQL6	1122 aa		32.46	■■■□□ 2.79
TRIM28-204	ENST00000594806	SNED1	Q8TER0	1413 aa		32.45	■■■□□ 2.79
TRIM28-204	ENST00000594806	NBPF7	P0C2Y1	421 aa	Predicted RBP	32.45	■■■□□ 2.79
TRIM28-204	ENST00000594806	FOXO4	P98177	505 aa		32.45	■■■□□ 2.79
TRIM28-204	ENST00000594806	C9orf131	Q5VYM1	1079 aa		32.45	■■■□□ 2.79
TRIM28-204	ENST00000594806	YTHDC1	Q96MU7	727 aa	Known RBP	32.45	■■■□□ 2.79
TRIM28-204	ENST00000594806	OLFM4	Q6UX06	510 aa		32.44	■■■□□ 2.78
TRIM28-204	ENST00000594806	ANKRD18A	Q8IVF6	992 aa		32.44	■■■□□ 2.78
TRIM28-204	ENST00000594806	GREM2	Q9H772	168 aa		32.44	■■■□□ 2.78
TRIM28-204	ENST00000594806	RCAN3	Q9UKA8	241 aa		32.44	■■■□□ 2.78
TRIM28-204	ENST00000594806	ZC3H4	Q9UPT8	1303 aa	Known RBP	32.44	■■■□□ 2.78
TRIM28-204	ENST00000594806	CCDC85A	Q96PX6	553 aa	Predicted RBP	32.43	■■■□□ 2.78
TRIM28-204	ENST00000594806	RNF181	Q9P0P0	153 aa		32.43	■■■□□ 2.78
TRIM28-204	ENST00000594806	DICER1	Q9UPY3	1922 aa	Known RBP	32.43	■■■□□ 2.78
TRIM28-204	ENST00000594806	LRRC37A	A6NMS7	1700 aa		32.42	■■■□□ 2.78
TRIM28-204	ENST00000594806	SUPT20H	Q8NEM7	779 aa		32.41	■■■□□ 2.78
TRIM28-204	ENST00000594806	VPS33B	Q9H267	617 aa		32.41	■■■□□ 2.78
TRIM28-204	ENST00000594806	ITGA6	P23229	1130 aa		32.4	■■■□□ 2.78
TRIM28-204	ENST00000594806	MPND	Q8N594	471 aa		32.4	■■■□□ 2.78
TRIM28-204	ENST00000594806	SUCLG2	Q96I99	432 aa		32.4	■■■□□ 2.78
TRIM28-204	ENST00000594806	ANKRD18B	A2A2Z9	1011 aa		32.39	■■■□□ 2.78
TRIM28-204	ENST00000594806	MS4A1	P11836	297 aa		32.39	■■■□□ 2.78
TRIM28-204	ENST00000594806	FAM161A	Q3B820	660 aa		32.39	■■■□□ 2.78
TRIM28-204	ENST00000594806	LMBR1L	Q6UX01	489 aa		32.39	■■■□□ 2.78
TRIM28-204	ENST00000594806	RTFDC1	Q9BY42	306 aa	Predicted RBP	32.39	■■■□□ 2.78
TRIM28-204	ENST00000594806	BSDC1	Q9NW68	430 aa	Predicted RBP	32.39	■■■□□ 2.78
TRIM28-204	ENST00000594806	IGHMBP2	P38935	993 aa	Known RBP	32.38	■■■□□ 2.77
TRIM28-204	ENST00000594806	IFIT5	Q13325	482 aa	Known RBP	32.38	■■■□□ 2.77
TRIM28-204	ENST00000594806	EPHA10	Q5JZY3	1008 aa		32.38	■■■□□ 2.77
TRIM28-204	ENST00000594806	DPP8	Q6V1X1	898 aa	Predicted RBP	32.38	■■■□□ 2.77
TRIM28-204	ENST00000594806	UBTFL1	P0CB47	393 aa	Predicted RBP	32.37	■■■□□ 2.77
TRIM28-204	ENST00000594806	PRELP	P51888	382 aa		32.37	■■■□□ 2.77
TRIM28-204	ENST00000594806	RABL6	Q3YEC7	729 aa	Predicted RBP	32.37	■■■□□ 2.77
TRIM28-204	ENST00000594806	FTSJ3	Q8IY81	847 aa	Known RBP	32.37	■■■□□ 2.77
TRIM28-204	ENST00000594806	KAZALD1	Q96I82	304 aa		32.37	■■■□□ 2.77
TRIM28-204	ENST00000594806	CCDC57	Q2TAC2	916 aa		32.36	■■■□□ 2.77
TRIM28-204	ENST00000594806	DZIP1L	Q8IYY4	767 aa	Known RBP	32.36	■■■□□ 2.77
TRIM28-204	ENST00000594806	CLUAP1	Q96AJ1	413 aa		32.36	■■■□□ 2.77
TRIM28-204	ENST00000594806	CHMP3	Q9Y3E7	222 aa		32.36	■■■□□ 2.77
TRIM28-204	ENST00000594806	COL4A1	P02462	1669 aa		32.35	■■■□□ 2.77
TRIM28-204	ENST00000594806	GNAI3	P08754	354 aa		32.35	■■■□□ 2.77
TRIM28-204	ENST00000594806	IARS	P41252	1262 aa	Known RBP	32.35	■■■□□ 2.77
TRIM28-204	ENST00000594806	MPHOSPH8	Q99549	860 aa		32.34	■■■□□ 2.77
TRIM28-204	ENST00000594806	BICC1	Q9H694	974 aa	Known RBP	32.34	■■■□□ 2.77
TRIM28-204	ENST00000594806	ZNF277	Q9NRM2	450 aa	Predicted RBP	32.34	■■■□□ 2.77
TRIM28-204	ENST00000594806	PODXL2	Q9NZ53	605 aa		32.34	■■■□□ 2.77
TRIM28-204	ENST00000594806	NSFL1C	Q9UNZ2	370 aa	Known RBP	32.33	■■■□□ 2.77
TRIM28-204	ENST00000594806	TNN	Q9UQP3	1299 aa		32.32	■■■□□ 2.76
TRIM28-204	ENST00000594806	TMEM57	Q8N5G2	664 aa		32.31	■■■□□ 2.76
TRIM28-204	ENST00000594806	GPSM2	P81274	684 aa		32.3	■■■□□ 2.76
TRIM28-204	ENST00000594806	SLC51A	Q86UW1	340 aa		32.3	■■■□□ 2.76
TRIM28-204	ENST00000594806	TIAM2	Q8IVF5	1701 aa		32.3	■■■□□ 2.76
TRIM28-204	ENST00000594806	ANKRD44	Q8N8A2	993 aa		32.3	■■■□□ 2.76
TRIM28-204	ENST00000594806	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	32.3	■■■□□ 2.76
TRIM28-204	ENST00000594806	MEIS3	Q99687	375 aa		32.3	■■■□□ 2.76
TRIM28-204	ENST00000594806	SPEF2	Q9C093	1822 aa		32.3	■■■□□ 2.76
TRIM28-204	ENST00000594806	TAF7L	Q5H9L4	462 aa		32.29	■■■□□ 2.76
TRIM28-204	ENST00000594806	ZNF784	Q8NCA9	323 aa	Predicted RBP	32.29	■■■□□ 2.76
TRIM28-204	ENST00000594806	JDP2	Q8WYK2	163 aa		32.29	■■■□□ 2.76
TRIM28-204	ENST00000594806	ANKIB1	Q9P2G1	1089 aa		32.29	■■■□□ 2.76
TRIM28-204	ENST00000594806	MINPP1	Q9UNW1	487 aa		32.29	■■■□□ 2.76
TRIM28-204	ENST00000594806	XDH	P47989	1333 aa		32.28	■■■□□ 2.76

Retrieved 100 of 20,778 RNA–protein pairs in 41 ms