RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 GGT6Q6P531 493 aa8.11□□□□□ -1.11
SMAD4-208ENST00000589706 Q6ZVU0 165 aa8.11□□□□□ -1.11
SMAD4-208ENST00000589706 ATCAYQ86WG3 371 aa8.11□□□□□ -1.11
SMAD4-208ENST00000589706 ALKBH8Q96BT7 664 aaKnown RBP8.11□□□□□ -1.11
SMAD4-208ENST00000589706 FAM135BQ49AJ0 1406 aa8.11□□□□□ -1.11
SMAD4-208ENST00000589706 XPCQ01831 940 aaPredicted RBP8.1□□□□□ -1.11
SMAD4-208ENST00000589706 ZNF295-AS1Q8N0V1 137 aa8.1□□□□□ -1.11
SMAD4-208ENST00000589706 THEMISQ8N1K5 641 aaPredicted RBP8.1□□□□□ -1.11
SMAD4-208ENST00000589706 L3MBTL2Q969R5 705 aa8.1□□□□□ -1.11
SMAD4-208ENST00000589706 NLRP3Q96P20 1036 aa8.1□□□□□ -1.11
SMAD4-208ENST00000589706 BACH2Q9BYV9 841 aa8.1□□□□□ -1.11
SMAD4-208ENST00000589706 POLIQ9UNA4 740 aa8.1□□□□□ -1.11
SMAD4-208ENST00000589706 MED14O60244 1454 aa8.1□□□□□ -1.11
SMAD4-208ENST00000589706 MEN1O00255 615 aa8.09□□□□□ -1.11
SMAD4-208ENST00000589706 GPR182O15218 404 aa8.09□□□□□ -1.11
SMAD4-208ENST00000589706 PRPF40AO75400 957 aaKnown RBP8.09□□□□□ -1.11
SMAD4-208ENST00000589706 DGKZQ13574 1117 aa8.09□□□□□ -1.11
SMAD4-208ENST00000589706 ETFBKMTQ8IXQ9 262 aa8.09□□□□□ -1.11
SMAD4-208ENST00000589706 ITPKCQ96DU7 683 aa8.09□□□□□ -1.11
SMAD4-208ENST00000589706 IFT43Q96FT9 208 aa8.09□□□□□ -1.11
SMAD4-208ENST00000589706 AGBL1Q96MI9 1066 aa8.09□□□□□ -1.11
SMAD4-208ENST00000589706 C8orf37Q96NL8 207 aa8.09□□□□□ -1.11
SMAD4-208ENST00000589706 ZSCAN10Q96SZ4 725 aaPredicted RBP8.09□□□□□ -1.11
SMAD4-208ENST00000589706 PARP2Q9UGN5 583 aa8.09□□□□□ -1.11
SMAD4-208ENST00000589706 PARP3Q9Y6F1 533 aa8.09□□□□□ -1.11
SMAD4-208ENST00000589706 KIF14Q15058 1648 aa8.09□□□□□ -1.11
SMAD4-208ENST00000589706 MZF1P28698 734 aaPredicted RBP8.08□□□□□ -1.12
SMAD4-208ENST00000589706 DNM1Q05193 864 aaKnown RBP8.08□□□□□ -1.12
SMAD4-208ENST00000589706 ZNF772Q68DY9 489 aaPredicted RBP8.08□□□□□ -1.12
SMAD4-208ENST00000589706 GJD3Q8N144 294 aa8.08□□□□□ -1.12
SMAD4-208ENST00000589706 DUSP9Q99956 384 aaKnown RBP8.08□□□□□ -1.12
SMAD4-208ENST00000589706 KLF16Q9BXK1 252 aaPredicted RBP8.08□□□□□ -1.12
SMAD4-208ENST00000589706 NIFKQ9BYG3 293 aaKnown RBP8.08□□□□□ -1.12
SMAD4-208ENST00000589706 PHACTR1Q9C0D0 580 aa8.08□□□□□ -1.12
SMAD4-208ENST00000589706 NIF3L1Q9GZT8 377 aa8.08□□□□□ -1.12
SMAD4-208ENST00000589706 KLK14Q9P0G3 267 aa8.08□□□□□ -1.12
SMAD4-208ENST00000589706 CDK11AQ9UQ88 783 aaPredicted RBP8.08□□□□□ -1.12
SMAD4-208ENST00000589706 SYNMO15061 1565 aa8.08□□□□□ -1.12
SMAD4-208ENST00000589706 ABCC1P33527 1531 aa8.08□□□□□ -1.12
SMAD4-208ENST00000589706 DEPDC5O75140 1603 aa8.07□□□□□ -1.12
SMAD4-208ENST00000589706 CDC42BPBQ9Y5S2 1711 aa8.07□□□□□ -1.12
SMAD4-208ENST00000589706 ZIC2O95409 532 aaPredicted RBP8.07□□□□□ -1.12
SMAD4-208ENST00000589706 RXRBP28702 533 aa8.07□□□□□ -1.12
SMAD4-208ENST00000589706 ITGAEP38570 1179 aa8.07□□□□□ -1.12
SMAD4-208ENST00000589706 ZAP70P43403 619 aa8.07□□□□□ -1.12
SMAD4-208ENST00000589706 USP5P45974 858 aa8.07□□□□□ -1.12
SMAD4-208ENST00000589706 RELBQ01201 579 aa8.07□□□□□ -1.12
SMAD4-208ENST00000589706 ATP2B2Q01814 1243 aa8.07□□□□□ -1.12
SMAD4-208ENST00000589706 FOXC1Q12948 553 aa8.07□□□□□ -1.12
SMAD4-208ENST00000589706 ZNF697Q5TEC3 545 aa8.07□□□□□ -1.12
SMAD4-208ENST00000589706 TMEM214Q6NUQ4 689 aaKnown RBP8.07□□□□□ -1.12
SMAD4-208ENST00000589706 SNIP1Q8TAD8 396 aaKnown RBP8.07□□□□□ -1.12
SMAD4-208ENST00000589706 EDEM1Q92611 657 aa8.07□□□□□ -1.12
SMAD4-208ENST00000589706 ZNF395Q9H8N7 513 aaPredicted RBP8.07□□□□□ -1.12
SMAD4-208ENST00000589706 ZFAND3Q9H8U3 227 aa8.07□□□□□ -1.12
SMAD4-208ENST00000589706 IQGAP1P46940 1657 aa8.07□□□□□ -1.12
SMAD4-208ENST00000589706 TNRQ92752 1358 aa8.07□□□□□ -1.12
SMAD4-208ENST00000589706 ITSN2Q9NZM3 1697 aa8.06□□□□□ -1.12
SMAD4-208ENST00000589706 SCAMP3O14828 347 aaKnown RBP8.06□□□□□ -1.12
SMAD4-208ENST00000589706 PDGFAP04085 211 aa8.06□□□□□ -1.12
SMAD4-208ENST00000589706 GTF2E1P29083 439 aaPredicted RBP8.06□□□□□ -1.12
SMAD4-208ENST00000589706 WDR4P57081 412 aaKnown RBP8.06□□□□□ -1.12
SMAD4-208ENST00000589706 C1orf53Q5VUE5 145 aa8.06□□□□□ -1.12
SMAD4-208ENST00000589706 TMC4Q7Z404 712 aa8.06□□□□□ -1.12
SMAD4-208ENST00000589706 ZNF598Q86UK7 904 aaKnown RBP8.06□□□□□ -1.12
SMAD4-208ENST00000589706 RHBDD1Q8TEB9 315 aa8.06□□□□□ -1.12
SMAD4-208ENST00000589706 FAM161BQ96MY7 647 aa8.06□□□□□ -1.12
SMAD4-208ENST00000589706 MRS2Q9HD23 443 aa8.06□□□□□ -1.12
SMAD4-208ENST00000589706 PKD2L1Q9P0L9 805 aa8.06□□□□□ -1.12
SMAD4-208ENST00000589706 WWC3Q9ULE0 1092 aa8.06□□□□□ -1.12
SMAD4-208ENST00000589706 SPAG9O60271 1321 aaKnown RBP8.05□□□□□ -1.12
SMAD4-208ENST00000589706 ZC3H6P61129 1189 aaKnown RBP8.05□□□□□ -1.12
SMAD4-208ENST00000589706 DAB2P98082 770 aa8.05□□□□□ -1.12
SMAD4-208ENST00000589706 ENOX2Q16206 610 aaKnown RBP8.05□□□□□ -1.12
SMAD4-208ENST00000589706 IFFO2Q5TF58 517 aa8.05□□□□□ -1.12
SMAD4-208ENST00000589706 RNF19AQ9NV58 838 aa8.05□□□□□ -1.12
SMAD4-208ENST00000589706 XIRP1Q702N8 1843 aaKnown RBP8.05□□□□□ -1.12
SMAD4-208ENST00000589706 PNMA6FA0A0J9YX94 578 aa8.04□□□□□ -1.12
SMAD4-208ENST00000589706 SORBS3O60504 671 aa8.04□□□□□ -1.12
SMAD4-208ENST00000589706 TIMP2P16035 220 aa8.04□□□□□ -1.12
SMAD4-208ENST00000589706 PCSK2P16519 638 aa8.04□□□□□ -1.12
SMAD4-208ENST00000589706 PSMD2Q13200 908 aa8.04□□□□□ -1.12
SMAD4-208ENST00000589706 LDLRAD1Q5T700 205 aa8.04□□□□□ -1.12
SMAD4-208ENST00000589706 MEX3CQ5U5Q3 659 aaKnown RBP8.04□□□□□ -1.12
SMAD4-208ENST00000589706 ALG1LQ6GMV1 187 aa8.04□□□□□ -1.12
SMAD4-208ENST00000589706 TREML1Q86YW5 311 aa8.04□□□□□ -1.12
SMAD4-208ENST00000589706 SPNS2Q8IVW8 549 aa8.04□□□□□ -1.12
SMAD4-208ENST00000589706 TMEM87AQ8NBN3 555 aa8.04□□□□□ -1.12
SMAD4-208ENST00000589706 SETDB2Q96T68 719 aa8.04□□□□□ -1.12
SMAD4-208ENST00000589706 JCADQ9P266 1359 aa8.04□□□□□ -1.12
SMAD4-208ENST00000589706 A2MP01023 1474 aa8.04□□□□□ -1.12
SMAD4-208ENST00000589706 SAMD9LQ8IVG5 1584 aa8.04□□□□□ -1.12
SMAD4-208ENST00000589706 ROBO1Q9Y6N7 1651 aa8.04□□□□□ -1.12
SMAD4-208ENST00000589706 TROQ12816 1431 aaPredicted RBP8.03□□□□□ -1.12
SMAD4-208ENST00000589706 FAM135AQ9P2D6 1515 aa8.03□□□□□ -1.12
SMAD4-208ENST00000589706 UGGT1Q9NYU2 1555 aa8.03□□□□□ -1.12
SMAD4-208ENST00000589706 ERCC5P28715 1186 aaPredicted RBP8.03□□□□□ -1.12
SMAD4-208ENST00000589706 TXLNAP40222 546 aa8.03□□□□□ -1.12
SMAD4-208ENST00000589706 HDLBPQ00341 1268 aaKnown RBP8.03□□□□□ -1.12
SMAD4-208ENST00000589706 GPR152Q8TDT2 470 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms