RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 ARFGEF2Q9Y6D5 1785 aa12.98□□□□□ -0.33
SS18-207ENST00000577636 HTATSF1O43719 755 aaKnown RBP12.97□□□□□ -0.33
SS18-207ENST00000577636 CELF2O95319 508 aaKnown RBP12.97□□□□□ -0.33
SS18-207ENST00000577636 GNAI1P63096 354 aa12.97□□□□□ -0.33
SS18-207ENST00000577636 SPINK5Q9NQ38 1064 aaPredicted RBP12.97□□□□□ -0.33
SS18-207ENST00000577636 TLL2Q9Y6L7 1015 aa12.97□□□□□ -0.33
SS18-207ENST00000577636 UBN2Q6ZU65 1347 aa12.96□□□□□ -0.33
SS18-207ENST00000577636 SLC34A2O95436 690 aa12.96□□□□□ -0.33
SS18-207ENST00000577636 HOXA10P31260 410 aaPredicted RBP12.96□□□□□ -0.33
SS18-207ENST00000577636 GRIPAP1Q4V328 841 aa12.96□□□□□ -0.33
SS18-207ENST00000577636 C3orf67Q6ZVT6 689 aa12.96□□□□□ -0.33
SS18-207ENST00000577636 PPP1R42Q7Z4L9 355 aa12.96□□□□□ -0.33
SS18-207ENST00000577636 NLRP3Q96P20 1036 aa12.96□□□□□ -0.33
SS18-207ENST00000577636 CRAMP1Q96RY5 1269 aa12.96□□□□□ -0.33
SS18-207ENST00000577636 GLIS2Q9BZE0 524 aaPredicted RBP12.96□□□□□ -0.33
SS18-207ENST00000577636 ADARB2Q9NS39 739 aaKnown RBP12.96□□□□□ -0.33
SS18-207ENST00000577636 ADAMTSL1Q8N6G6 1762 aa12.95□□□□□ -0.34
SS18-207ENST00000577636 CXCL9Q07325 125 aa12.95□□□□□ -0.34
SS18-207ENST00000577636 THUMPD2Q9BTF0 503 aaKnown RBP12.95□□□□□ -0.34
SS18-207ENST00000577636 BCL2L13Q9BXK5 485 aa12.95□□□□□ -0.34
SS18-207ENST00000577636 GPRC5DQ9NZD1 345 aa12.95□□□□□ -0.34
SS18-207ENST00000577636 COL4A5P29400 1685 aa12.95□□□□□ -0.34
SS18-207ENST00000577636 FANCIQ9NVI1 1328 aa12.94□□□□□ -0.34
SS18-207ENST00000577636 EIF2S2P20042 333 aaKnown RBP12.94□□□□□ -0.34
SS18-207ENST00000577636 MAP2K2P36507 400 aa12.94□□□□□ -0.34
SS18-207ENST00000577636 GMPSP49915 693 aaPredicted RBP12.94□□□□□ -0.34
SS18-207ENST00000577636 EIF4A1P60842 406 aaKnown RBP12.94□□□□□ -0.34
SS18-207ENST00000577636 IFT57Q9NWB7 429 aa12.94□□□□□ -0.34
SS18-207ENST00000577636 ZNRF3Q9ULT6 936 aa12.94□□□□□ -0.34
SS18-207ENST00000577636 LAS1LQ9Y4W2 734 aaKnown RBP12.94□□□□□ -0.34
SS18-207ENST00000577636 RAD17O75943 681 aa12.93□□□□□ -0.34
SS18-207ENST00000577636 NTSR2O95665 410 aa12.93□□□□□ -0.34
SS18-207ENST00000577636 CIAPIN1Q6FI81 312 aa12.93□□□□□ -0.34
SS18-207ENST00000577636 DPP8Q6V1X1 898 aaPredicted RBP12.93□□□□□ -0.34
SS18-207ENST00000577636 GIGYF2Q6Y7W6 1299 aaKnown RBP12.93□□□□□ -0.34
SS18-207ENST00000577636 SAPCD2Q86UD0 394 aa12.93□□□□□ -0.34
SS18-207ENST00000577636 ZNF34Q8IZ26 560 aa12.93□□□□□ -0.34
SS18-207ENST00000577636 SUPT20HQ8NEM7 779 aa12.93□□□□□ -0.34
SS18-207ENST00000577636 ZNF428Q96B54 188 aa12.93□□□□□ -0.34
SS18-207ENST00000577636 UTP14AQ9BVJ6 771 aaKnown RBP12.93□□□□□ -0.34
SS18-207ENST00000577636 MCOLN1Q9GZU1 580 aa12.93□□□□□ -0.34
SS18-207ENST00000577636 ATP6V0A2Q9Y487 856 aa12.93□□□□□ -0.34
SS18-207ENST00000577636 SNED1Q8TER0 1413 aa12.93□□□□□ -0.34
SS18-207ENST00000577636 LTBP1Q14766 1721 aa12.93□□□□□ -0.34
SS18-207ENST00000577636 MS4A1P11836 297 aa12.92□□□□□ -0.34
SS18-207ENST00000577636 DGKZQ13574 1117 aa12.92□□□□□ -0.34
SS18-207ENST00000577636 MPNDQ8N594 471 aa12.92□□□□□ -0.34
SS18-207ENST00000577636 TSR2Q969E8 191 aaKnown RBP12.92□□□□□ -0.34
SS18-207ENST00000577636 ANXA1P04083 346 aa12.91□□□□□ -0.34
SS18-207ENST00000577636 HCLS1P14317 486 aaPredicted RBP12.91□□□□□ -0.34
SS18-207ENST00000577636 RGS19P49795 217 aa12.91□□□□□ -0.34
SS18-207ENST00000577636 HIRAP54198 1017 aaPredicted RBP12.91□□□□□ -0.34
SS18-207ENST00000577636 EXOSC9Q06265 439 aaKnown RBP12.91□□□□□ -0.34
SS18-207ENST00000577636 AIMP1Q12904 312 aaKnown RBP12.91□□□□□ -0.34
SS18-207ENST00000577636 PARP10Q53GL7 1025 aa12.91□□□□□ -0.34
SS18-207ENST00000577636 USP48Q86UV5 1035 aa12.91□□□□□ -0.34
SS18-207ENST00000577636 CCDC136Q96JN2 1154 aa12.91□□□□□ -0.34
SS18-207ENST00000577636 ABCC4O15439 1325 aa12.9□□□□□ -0.34
SS18-207ENST00000577636 SHTN1A0MZ66 631 aa12.9□□□□□ -0.34
SS18-207ENST00000577636 H7C1D1 291 aa12.9□□□□□ -0.34
SS18-207ENST00000577636 CA12O43570 354 aa12.9□□□□□ -0.34
SS18-207ENST00000577636 PLIN1O60240 522 aa12.9□□□□□ -0.34
SS18-207ENST00000577636 RARSP54136 660 aaKnown RBP12.9□□□□□ -0.34
SS18-207ENST00000577636 TNIP1Q15025 636 aa12.9□□□□□ -0.34
SS18-207ENST00000577636 DLK2Q6UY11 383 aa12.9□□□□□ -0.34
SS18-207ENST00000577636 CDC37L1Q7L3B6 337 aa12.9□□□□□ -0.34
SS18-207ENST00000577636 TRPM4Q8TD43 1214 aa12.9□□□□□ -0.34
SS18-207ENST00000577636 NECTIN2Q92692 538 aa12.9□□□□□ -0.34
SS18-207ENST00000577636 VPS33BQ9H267 617 aa12.9□□□□□ -0.34
SS18-207ENST00000577636 CNOT7Q9UIV1 285 aaKnown RBP12.9□□□□□ -0.34
SS18-207ENST00000577636 BBOX1O75936 387 aa12.89□□□□□ -0.35
SS18-207ENST00000577636 BRPF1P55201 1214 aaPredicted RBP12.89□□□□□ -0.35
SS18-207ENST00000577636 RBM26Q5T8P6 1007 aaKnown RBP12.89□□□□□ -0.35
SS18-207ENST00000577636 DDX46Q7L014 1031 aaKnown RBP12.89□□□□□ -0.35
SS18-207ENST00000577636 SP8Q8IXZ3 490 aa12.89□□□□□ -0.35
SS18-207ENST00000577636 FRAT1Q92837 279 aaPredicted RBP12.89□□□□□ -0.35
SS18-207ENST00000577636 ZIC5Q96T25 663 aa12.89□□□□□ -0.35
SS18-207ENST00000577636 TSPYL4Q9UJ04 414 aa12.89□□□□□ -0.35
SS18-207ENST00000577636 ZBTB12Q9Y330 459 aaPredicted RBP12.89□□□□□ -0.35
SS18-207ENST00000577636 BCAR3O75815 825 aa12.88□□□□□ -0.35
SS18-207ENST00000577636 HUNKP57058 714 aa12.88□□□□□ -0.35
SS18-207ENST00000577636 PDE3AQ14432 1141 aa12.88□□□□□ -0.35
SS18-207ENST00000577636 SLC10A5Q5PT55 438 aa12.88□□□□□ -0.35
SS18-207ENST00000577636 RTFDC1Q9BY42 306 aaPredicted RBP12.88□□□□□ -0.35
SS18-207ENST00000577636 SMC4Q9NTJ3 1288 aa12.88□□□□□ -0.35
SS18-207ENST00000577636 IBTKQ9P2D0 1353 aaPredicted RBP12.88□□□□□ -0.35
SS18-207ENST00000577636 RIC1Q4ADV7 1423 aa12.88□□□□□ -0.35
SS18-207ENST00000577636 RIMBP2O15034 1052 aa12.87□□□□□ -0.35
SS18-207ENST00000577636 IPO8O15397 1037 aaKnown RBP12.87□□□□□ -0.35
SS18-207ENST00000577636 KIAA2012Q0VF49 1180 aa12.87□□□□□ -0.35
SS18-207ENST00000577636 PROSER3Q2NL68 480 aa12.87□□□□□ -0.35
SS18-207ENST00000577636 SAMD7Q7Z3H4 446 aa12.87□□□□□ -0.35
SS18-207ENST00000577636 MICALL2Q8IY33 904 aa12.87□□□□□ -0.35
SS18-207ENST00000577636 EXOC6Q8TAG9 804 aa12.87□□□□□ -0.35
SS18-207ENST00000577636 ZC3H15Q8WU90 426 aaKnown RBP12.87□□□□□ -0.35
SS18-207ENST00000577636 HHIPL1Q96JK4 782 aa12.87□□□□□ -0.35
SS18-207ENST00000577636 PGAP2Q9UHJ9 254 aa12.87□□□□□ -0.35
SS18-207ENST00000577636 TRMT112Q9UI30 125 aaKnown RBP12.87□□□□□ -0.35
SS18-207ENST00000577636 NUP98P52948 1817 aa12.87□□□□□ -0.35
SS18-207ENST00000577636 KIF16BQ96L93 1317 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms