RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	ERO1A	Q96HE7	468 aa		13.27	□□□□□ -0.29
CLN3-238	ENST00000569430	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.27	□□□□□ -0.29
CLN3-238	ENST00000569430	HYPK	Q9NX55	129 aa		13.27	□□□□□ -0.29
CLN3-238	ENST00000569430	ZSCAN20	P17040	1043 aa	Predicted RBP	13.26	□□□□□ -0.29
CLN3-238	ENST00000569430	JMY	Q8N9B5	988 aa		13.26	□□□□□ -0.29
CLN3-238	ENST00000569430	DBF4	Q9UBU7	674 aa	Predicted RBP	13.26	□□□□□ -0.29
CLN3-238	ENST00000569430	CASQ1	P31415	396 aa		13.26	□□□□□ -0.29
CLN3-238	ENST00000569430	MCM6	Q14566	821 aa		13.26	□□□□□ -0.29
CLN3-238	ENST00000569430	KLHL10	Q6JEL2	608 aa		13.26	□□□□□ -0.29
CLN3-238	ENST00000569430	KLHDC4	Q8TBB5	520 aa		13.26	□□□□□ -0.29
CLN3-238	ENST00000569430	SLC27A2	O14975	620 aa		13.26	□□□□□ -0.29
CLN3-238	ENST00000569430	PDE4C	Q08493	712 aa		13.26	□□□□□ -0.29
CLN3-238	ENST00000569430	RRP12	Q5JTH9	1297 aa	Known RBP	13.26	□□□□□ -0.29
CLN3-238	ENST00000569430	PPFIBP1	Q86W92	1011 aa		13.26	□□□□□ -0.29
CLN3-238	ENST00000569430	GOLIM4	O00461	696 aa		13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	ZSCAN12	O43309	604 aa		13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	MARCKS	P29966	332 aa	Predicted RBP	13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	UBASH3A	P57075	661 aa		13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	ARID5B	Q14865	1188 aa		13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	CCDC82	Q8N4S0	544 aa		13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	EDC3	Q96F86	508 aa	Known RBP	13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	MYD88	Q99836	296 aa		13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	QRICH2	Q9H0J4	1663 aa		13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	IPO7	O95373	1038 aa	Known RBP	13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	FAM193A	P78312	1265 aa		13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	APOBR	Q0VD83	1088 aa		13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	AXDND1	Q5T1B0	1012 aa	Predicted RBP	13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	RAPGEF4	Q8WZA2	1011 aa		13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	FRMPD1	Q5SYB0	1578 aa		13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	ADGRB3	O60242	1522 aa		13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	NCBP1	Q09161	790 aa	Known RBP	13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	CCDC129	Q6ZRS4	1044 aa		13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	ZNF710	Q8N1W2	664 aa		13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	NOC3L	Q8WTT2	800 aa	Known RBP	13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	MRPS27	Q92552	414 aa	Known RBP	13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	TRIM34	Q9BYJ4	488 aa		13.25	□□□□□ -0.29
CLN3-238	ENST00000569430		U3KPZ7	1027 aa	Predicted RBP	13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	ADGRB1	O14514	1584 aa		13.25	□□□□□ -0.29
CLN3-238	ENST00000569430	KIF4B	Q2VIQ3	1234 aa		13.24	□□□□□ -0.29
CLN3-238	ENST00000569430	ACBD3	Q9H3P7	528 aa		13.24	□□□□□ -0.29
CLN3-238	ENST00000569430	NCOA5	Q9HCD5	579 aa	Known RBP	13.24	□□□□□ -0.29
CLN3-238	ENST00000569430	MAP3K19	Q56UN5	1328 aa		13.24	□□□□□ -0.29
CLN3-238	ENST00000569430	LSG1	Q9H089	658 aa	Known RBP	13.24	□□□□□ -0.29
CLN3-238	ENST00000569430	SNRK	Q9NRH2	765 aa		13.24	□□□□□ -0.29
CLN3-238	ENST00000569430	ORC3	Q9UBD5	711 aa	Predicted RBP	13.24	□□□□□ -0.29
CLN3-238	ENST00000569430	PTCH1	Q13635	1447 aa		13.24	□□□□□ -0.29
CLN3-238	ENST00000569430	OTUD7B	Q6GQQ9	843 aa		13.24	□□□□□ -0.29
CLN3-238	ENST00000569430	CCDC150	Q8NCX0	1101 aa		13.24	□□□□□ -0.29
CLN3-238	ENST00000569430	PRDM4	Q9UKN5	801 aa		13.24	□□□□□ -0.29
CLN3-238	ENST00000569430	GLI2	P10070	1586 aa		13.24	□□□□□ -0.29
CLN3-238	ENST00000569430	VWDE	Q8N2E2	1590 aa		13.24	□□□□□ -0.29
CLN3-238	ENST00000569430	KIF24	Q5T7B8	1368 aa		13.24	□□□□□ -0.29
CLN3-238	ENST00000569430	TTC41P	Q6P2S7	1318 aa		13.23	□□□□□ -0.29
CLN3-238	ENST00000569430	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	13.23	□□□□□ -0.29
CLN3-238	ENST00000569430	ANKRD20A12P	Q8NF67	263 aa		13.23	□□□□□ -0.29
CLN3-238	ENST00000569430	UTP14A	Q9BVJ6	771 aa	Known RBP	13.23	□□□□□ -0.29
CLN3-238	ENST00000569430	RNF216	Q9NWF9	866 aa	Predicted RBP	13.23	□□□□□ -0.29
CLN3-238	ENST00000569430	DEPDC5	O75140	1603 aa		13.23	□□□□□ -0.29
CLN3-238	ENST00000569430	C10orf67	Q8IYJ2	551 aa		13.23	□□□□□ -0.29
CLN3-238	ENST00000569430	CAGE1	Q8TC20	777 aa		13.23	□□□□□ -0.29
CLN3-238	ENST00000569430	ARFGAP3	Q9NP61	516 aa		13.23	□□□□□ -0.29
CLN3-238	ENST00000569430	HMG20B	Q9P0W2	317 aa		13.23	□□□□□ -0.29
CLN3-238	ENST00000569430	MET	P08581	1390 aa		13.23	□□□□□ -0.29
CLN3-238	ENST00000569430	GOLGA8B	A8MQT2	603 aa		13.23	□□□□□ -0.29
CLN3-238	ENST00000569430	ATP5J2-PTCD1	G3V325	749 aa		13.23	□□□□□ -0.29
CLN3-238	ENST00000569430	PTCD1	O75127	700 aa	Known RBP	13.23	□□□□□ -0.29
CLN3-238	ENST00000569430	RPS6KB1	P23443	525 aa		13.23	□□□□□ -0.29
CLN3-238	ENST00000569430	JAKMIP3	Q5VZ66	844 aa		13.23	□□□□□ -0.29
CLN3-238	ENST00000569430	LRRC8A	Q8IWT6	810 aa		13.23	□□□□□ -0.29
CLN3-238	ENST00000569430	CCDC144CP	Q8IYA2	1237 aa		13.23	□□□□□ -0.29
CLN3-238	ENST00000569430	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.23	□□□□□ -0.29
CLN3-238	ENST00000569430	PTPDC1	A2A3K4	754 aa		13.22	□□□□□ -0.29
CLN3-238	ENST00000569430	ERLIN1	O75477	346 aa		13.22	□□□□□ -0.29
CLN3-238	ENST00000569430	PIP4K2A	P48426	406 aa	Predicted RBP	13.22	□□□□□ -0.29
CLN3-238	ENST00000569430	DHX8	Q14562	1220 aa	Known RBP	13.22	□□□□□ -0.29
CLN3-238	ENST00000569430	SSH3	Q8TE77	659 aa		13.22	□□□□□ -0.29
CLN3-238	ENST00000569430	CARD6	Q9BX69	1037 aa		13.22	□□□□□ -0.29
CLN3-238	ENST00000569430	KCNF1	Q9H3M0	494 aa		13.22	□□□□□ -0.29
CLN3-238	ENST00000569430	STAP2	Q9UGK3	403 aa		13.22	□□□□□ -0.29
CLN3-238	ENST00000569430	PHACTR2	O75167	634 aa		13.22	□□□□□ -0.29
CLN3-238	ENST00000569430	EIF3J	O75822	258 aa	Known RBP	13.22	□□□□□ -0.29
CLN3-238	ENST00000569430	UBE3B	Q7Z3V4	1068 aa		13.22	□□□□□ -0.29
CLN3-238	ENST00000569430	ZBTB22	O15209	634 aa		13.21	□□□□□ -0.29
CLN3-238	ENST00000569430	FILIP1L	Q4L180	1135 aa		13.21	□□□□□ -0.29
CLN3-238	ENST00000569430	CNNM3	Q8NE01	707 aa		13.21	□□□□□ -0.29
CLN3-238	ENST00000569430	KARS	Q15046	597 aa	Known RBP	13.21	□□□□□ -0.29
CLN3-238	ENST00000569430	SPTLC3	Q9NUV7	552 aa		13.21	□□□□□ -0.29
CLN3-238	ENST00000569430	MLH3	Q9UHC1	1453 aa		13.21	□□□□□ -0.29
CLN3-238	ENST00000569430	ESCO1	Q5FWF5	840 aa		13.21	□□□□□ -0.3
CLN3-238	ENST00000569430	CCDC70	Q6NSX1	233 aa		13.21	□□□□□ -0.3
CLN3-238	ENST00000569430	ZSWIM6	Q9HCJ5	1215 aa		13.21	□□□□□ -0.3
CLN3-238	ENST00000569430	TSPOAP1	O95153	1857 aa		13.21	□□□□□ -0.3
CLN3-238	ENST00000569430	GRM8	O00222	908 aa		13.2	□□□□□ -0.3
CLN3-238	ENST00000569430	EVC	P57679	992 aa		13.2	□□□□□ -0.3
CLN3-238	ENST00000569430	CCDC191	Q8NCU4	936 aa		13.2	□□□□□ -0.3
CLN3-238	ENST00000569430	FTO	Q9C0B1	505 aa	Known RBP eCLIP	13.2	□□□□□ -0.3
CLN3-238	ENST00000569430		H0YHG0	523 aa		13.2	□□□□□ -0.3
CLN3-238	ENST00000569430	HMGB1	P09429	215 aa	Known RBP	13.2	□□□□□ -0.3
CLN3-238	ENST00000569430	FAM160A1	Q05DH4	1040 aa		13.2	□□□□□ -0.3
CLN3-238	ENST00000569430	TTC39A	Q5SRH9	613 aa		13.2	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms