RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 GPR108Q9NPR9 543 aa24.38■■□□□ 1.49
CLN3-230ENST00000568076 EXOC5O00471 708 aa24.37■■□□□ 1.49
CLN3-230ENST00000568076 VPS53Q5VIR6 699 aa24.37■■□□□ 1.49
CLN3-230ENST00000568076 GAS2L3Q86XJ1 694 aa24.37■■□□□ 1.49
CLN3-230ENST00000568076 PUS3Q9BZE2 481 aaKnown RBP24.37■■□□□ 1.49
CLN3-230ENST00000568076 PDRG1Q9NUG6 133 aa24.37■■□□□ 1.49
CLN3-230ENST00000568076 LARGE1O95461 756 aa24.36■■□□□ 1.49
CLN3-230ENST00000568076 ZKSCAN1P17029 563 aaPredicted RBP24.36■■□□□ 1.49
CLN3-230ENST00000568076 KCNJ4P48050 445 aa24.36■■□□□ 1.49
CLN3-230ENST00000568076 TIMM10P62072 90 aa24.36■■□□□ 1.49
CLN3-230ENST00000568076 COL9A3Q14050 684 aaPredicted RBP24.36■■□□□ 1.49
CLN3-230ENST00000568076 RFX7Q2KHR2 1363 aa24.36■■□□□ 1.49
CLN3-230ENST00000568076 CCDC9Q9Y3X0 531 aaKnown RBP24.36■■□□□ 1.49
CLN3-230ENST00000568076 RPAP1Q9BWH6 1393 aaPredicted RBP24.36■■□□□ 1.49
CLN3-230ENST00000568076 CYP46A1Q9Y6A2 500 aa24.36■■□□□ 1.49
CLN3-230ENST00000568076 ZNF609O15014 1411 aa24.35■■□□□ 1.49
CLN3-230ENST00000568076 MAP3K15Q6ZN16 1313 aa24.35■■□□□ 1.49
CLN3-230ENST00000568076 TAF5LO75529 589 aa24.35■■□□□ 1.49
CLN3-230ENST00000568076 CIAO1O76071 339 aa24.35■■□□□ 1.49
CLN3-230ENST00000568076 PCCAP05165 728 aaPredicted RBP24.35■■□□□ 1.49
CLN3-230ENST00000568076 CYP19A1P11511 503 aaPredicted RBP24.35■■□□□ 1.49
CLN3-230ENST00000568076 FAM89AQ96GI7 184 aa24.35■■□□□ 1.49
CLN3-230ENST00000568076 NEUROD6Q96NK8 337 aa24.35■■□□□ 1.49
CLN3-230ENST00000568076 TAF6LQ9Y6J9 622 aa24.35■■□□□ 1.49
CLN3-230ENST00000568076 WNK3Q9BYP7 1800 aa24.35■■□□□ 1.49
CLN3-230ENST00000568076 PRPF40AO75400 957 aaKnown RBP24.34■■□□□ 1.49
CLN3-230ENST00000568076 HLFQ16534 295 aa24.34■■□□□ 1.49
CLN3-230ENST00000568076 GIGYF2Q6Y7W6 1299 aaKnown RBP24.34■■□□□ 1.49
CLN3-230ENST00000568076 DDX46Q7L014 1031 aaKnown RBP24.34■■□□□ 1.49
CLN3-230ENST00000568076 MRE11P49959 708 aa24.33■■□□□ 1.49
CLN3-230ENST00000568076 SYTL4Q96C24 671 aaPredicted RBP24.33■■□□□ 1.49
CLN3-230ENST00000568076 PANK2Q9BZ23 570 aa24.33■■□□□ 1.49
CLN3-230ENST00000568076 ISY1Q9ULR0 285 aaKnown RBP24.33■■□□□ 1.49
CLN3-230ENST00000568076 ZBTB38Q8NAP3 1195 aaPredicted RBP24.33■■□□□ 1.48
CLN3-230ENST00000568076 PLA2G12BQ9BX93 195 aa24.33■■□□□ 1.48
CLN3-230ENST00000568076 ZBTB1Q9Y2K1 713 aa24.33■■□□□ 1.48
CLN3-230ENST00000568076 KBTBD3Q8NAB2 608 aa24.32■■□□□ 1.48
CLN3-230ENST00000568076 SEC62Q99442 399 aaKnown RBP24.32■■□□□ 1.48
CLN3-230ENST00000568076 GRPEL1Q9HAV7 217 aa24.32■■□□□ 1.48
CLN3-230ENST00000568076 PRIM1P49642 420 aaKnown RBP24.31■■□□□ 1.48
CLN3-230ENST00000568076 CCDC57Q2TAC2 916 aa24.31■■□□□ 1.48
CLN3-230ENST00000568076 USPL1Q5W0Q7 1092 aa24.31■■□□□ 1.48
CLN3-230ENST00000568076 CCDC129Q6ZRS4 1044 aa24.31■■□□□ 1.48
CLN3-230ENST00000568076 SYNE4Q8N205 404 aa24.31■■□□□ 1.48
CLN3-230ENST00000568076 GPT2Q8TD30 523 aa24.31■■□□□ 1.48
CLN3-230ENST00000568076 A0A1B0GUL7 405 aa24.31■■□□□ 1.48
CLN3-230ENST00000568076 CSF1RP07333 972 aa24.31■■□□□ 1.48
CLN3-230ENST00000568076 CCDC85AQ96PX6 553 aaPredicted RBP24.31■■□□□ 1.48
CLN3-230ENST00000568076 LTBP4Q8N2S1 1624 aa24.3■■□□□ 1.48
CLN3-230ENST00000568076 ST3GAL1Q11201 340 aa24.3■■□□□ 1.48
CLN3-230ENST00000568076 GOLIM4O00461 696 aa24.29■■□□□ 1.48
CLN3-230ENST00000568076 ADAMTS2O95450 1211 aa24.29■■□□□ 1.48
CLN3-230ENST00000568076 GPTP24298 496 aa24.29■■□□□ 1.48
CLN3-230ENST00000568076 PSMA5P28066 241 aa24.29■■□□□ 1.48
CLN3-230ENST00000568076 TSGA10IPQ3SY00 556 aa24.29■■□□□ 1.48
CLN3-230ENST00000568076 RNF20Q5VTR2 975 aa24.29■■□□□ 1.48
CLN3-230ENST00000568076 NLRP10Q86W26 655 aa24.29■■□□□ 1.48
CLN3-230ENST00000568076 PAG1Q9NWQ8 432 aa24.29■■□□□ 1.48
CLN3-230ENST00000568076 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.29■■□□□ 1.48
CLN3-230ENST00000568076 PALLDQ8WX93 1383 aa24.29■■□□□ 1.48
CLN3-230ENST00000568076 WDR33Q9C0J8 1336 aaKnown RBP24.29■■□□□ 1.48
CLN3-230ENST00000568076 DOT1LQ8TEK3 1739 aa24.29■■□□□ 1.48
CLN3-230ENST00000568076 CCDC83Q8IWF9 413 aa24.29■■□□□ 1.48
CLN3-230ENST00000568076 ZSCAN31Q96LW9 406 aaPredicted RBP24.29■■□□□ 1.48
CLN3-230ENST00000568076 ME3Q16798 604 aa24.28■■□□□ 1.48
CLN3-230ENST00000568076 MCMDC2Q4G0Z9 681 aa24.28■■□□□ 1.48
CLN3-230ENST00000568076 CAVIN1Q6NZI2 390 aaKnown RBP24.28■■□□□ 1.48
CLN3-230ENST00000568076 HMG20BQ9P0W2 317 aa24.28■■□□□ 1.48
CLN3-230ENST00000568076 SPATA31A1Q5TZJ5 1347 aa24.28■■□□□ 1.48
CLN3-230ENST00000568076 NCLP19338 710 aaKnown RBP24.27■■□□□ 1.48
CLN3-230ENST00000568076 SLFNL1Q499Z3 407 aa24.27■■□□□ 1.48
CLN3-230ENST00000568076 SH2B1Q9NRF2 756 aaPredicted RBP24.27■■□□□ 1.48
CLN3-230ENST00000568076 CEP126Q9P2H0 1117 aa24.27■■□□□ 1.48
CLN3-230ENST00000568076 TPCN1Q9ULQ1 816 aa24.27■■□□□ 1.48
CLN3-230ENST00000568076 CDHR2Q9BYE9 1310 aa24.27■■□□□ 1.48
CLN3-230ENST00000568076 KAT6BQ8WYB5 2073 aa24.27■■□□□ 1.48
CLN3-230ENST00000568076 NRAPQ86VF7 1730 aa24.27■■□□□ 1.48
CLN3-230ENST00000568076 FBXO3Q9UK99 471 aa24.27■■□□□ 1.48
CLN3-230ENST00000568076 SH3TC1Q8TE82 1336 aa24.26■■□□□ 1.47
CLN3-230ENST00000568076 RPS6KB1P23443 525 aa24.26■■□□□ 1.47
CLN3-230ENST00000568076 BLOC1S2Q6QNY1 142 aa24.26■■□□□ 1.47
CLN3-230ENST00000568076 SMC3Q9UQE7 1217 aa24.26■■□□□ 1.47
CLN3-230ENST00000568076 DTNBO60941 627 aa24.25■■□□□ 1.47
CLN3-230ENST00000568076 TCEANC2Q96MN5 208 aa24.25■■□□□ 1.47
CLN3-230ENST00000568076 NSFL1CQ9UNZ2 370 aaKnown RBP24.25■■□□□ 1.47
CLN3-230ENST00000568076 IFIT1P09914 478 aaKnown RBP24.25■■□□□ 1.47
CLN3-230ENST00000568076 SYT1P21579 422 aa24.25■■□□□ 1.47
CLN3-230ENST00000568076 HSP90AB3PQ58FF7 597 aa24.25■■□□□ 1.47
CLN3-230ENST00000568076 ADORA1P30542 326 aa24.24■■□□□ 1.47
CLN3-230ENST00000568076 IFIT5Q13325 482 aaKnown RBP24.24■■□□□ 1.47
CLN3-230ENST00000568076 ZSCAN23Q3MJ62 389 aa24.24■■□□□ 1.47
CLN3-230ENST00000568076 FOXD4L6Q3SYB3 417 aaPredicted RBP24.24■■□□□ 1.47
CLN3-230ENST00000568076 FOXD4L3Q6VB84 417 aaPredicted RBP24.24■■□□□ 1.47
CLN3-230ENST00000568076 CDCA7Q9BWT1 371 aaPredicted RBP24.24■■□□□ 1.47
CLN3-230ENST00000568076 ALDH8A1Q9H2A2 487 aaPredicted RBP24.24■■□□□ 1.47
CLN3-230ENST00000568076 PHLPP1O60346 1717 aa24.24■■□□□ 1.47
CLN3-230ENST00000568076 ANKRD36CQ5JPF3 1778 aa24.24■■□□□ 1.47
CLN3-230ENST00000568076 STX6O43752 255 aa24.23■■□□□ 1.47
CLN3-230ENST00000568076 NECAB1Q8N987 351 aa24.23■■□□□ 1.47
CLN3-230ENST00000568076 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms