RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.63□□□□□ -1.03
VPS13C-210ENST00000561258 TGFBR3LH3BV60 316 aa8.63□□□□□ -1.03
VPS13C-210ENST00000561258 RTN1Q16799 776 aa8.63□□□□□ -1.03
VPS13C-210ENST00000561258 PPP1R12CQ9BZL4 782 aa8.63□□□□□ -1.03
VPS13C-210ENST00000561258 EFCC1Q9HA90 598 aa8.63□□□□□ -1.03
VPS13C-210ENST00000561258 USTQ9Y2C2 406 aa8.63□□□□□ -1.03
VPS13C-210ENST00000561258 CPB1P15086 417 aa8.62□□□□□ -1.03
VPS13C-210ENST00000561258 FAM35AQ86V20 835 aa8.62□□□□□ -1.03
VPS13C-210ENST00000561258 MAFBQ9Y5Q3 323 aaPredicted RBP8.62□□□□□ -1.03
VPS13C-210ENST00000561258 PLAURQ03405 335 aa8.61□□□□□ -1.03
VPS13C-210ENST00000561258 CRTC2Q53ET0 693 aaPredicted RBP8.61□□□□□ -1.03
VPS13C-210ENST00000561258 TMCO4Q5TGY1 634 aa8.61□□□□□ -1.03
VPS13C-210ENST00000561258 KRT25Q7Z3Z0 450 aa8.61□□□□□ -1.03
VPS13C-210ENST00000561258 SSBP4Q9BWG4 385 aaPredicted RBP8.61□□□□□ -1.03
VPS13C-210ENST00000561258 GZF1Q9H116 711 aaPredicted RBP8.61□□□□□ -1.03
VPS13C-210ENST00000561258 KLK14Q9P0G3 267 aa8.61□□□□□ -1.03
VPS13C-210ENST00000561258 ZFATQ9P243 1243 aa8.61□□□□□ -1.03
VPS13C-210ENST00000561258 ZBTB42B2RXF5 422 aa8.6□□□□□ -1.03
VPS13C-210ENST00000561258 RFX1P22670 979 aa8.6□□□□□ -1.03
VPS13C-210ENST00000561258 DPYDQ12882 1025 aa8.6□□□□□ -1.03
VPS13C-210ENST00000561258 MSL1Q68DK7 614 aa8.6□□□□□ -1.03
VPS13C-210ENST00000561258 NBPF11Q86T75 865 aa8.6□□□□□ -1.03
VPS13C-210ENST00000561258 LPIN3Q9BQK8 851 aa8.6□□□□□ -1.03
VPS13C-210ENST00000561258 TARSP26639 723 aaKnown RBP8.59□□□□□ -1.03
VPS13C-210ENST00000561258 INPP5BP32019 993 aa8.59□□□□□ -1.03
VPS13C-210ENST00000561258 IDH3AP50213 366 aa8.59□□□□□ -1.03
VPS13C-210ENST00000561258 MLLT1Q03111 559 aaPredicted RBP8.59□□□□□ -1.03
VPS13C-210ENST00000561258 GRIK5Q16478 980 aa8.59□□□□□ -1.03
VPS13C-210ENST00000561258 PERM1Q5SV97 790 aa8.59□□□□□ -1.03
VPS13C-210ENST00000561258 LARP1Q6PKG0 1096 aaKnown RBP8.59□□□□□ -1.03
VPS13C-210ENST00000561258 RGS22Q8NE09 1264 aa8.59□□□□□ -1.03
VPS13C-210ENST00000561258 PATL2C9JE40 543 aaKnown RBP8.58□□□□□ -1.04
VPS13C-210ENST00000561258 HYAL3O43820 417 aaPredicted RBP8.58□□□□□ -1.04
VPS13C-210ENST00000561258 IGFBP4P22692 258 aa8.58□□□□□ -1.04
VPS13C-210ENST00000561258 PTK7Q13308 1070 aa8.58□□□□□ -1.04
VPS13C-210ENST00000561258 LRP8Q14114 963 aa8.58□□□□□ -1.04
VPS13C-210ENST00000561258 WFDC12Q8WWY7 111 aa8.58□□□□□ -1.04
VPS13C-210ENST00000561258 MAP3K6O95382 1288 aa8.57□□□□□ -1.04
VPS13C-210ENST00000561258 BRD1O95696 1058 aa8.57□□□□□ -1.04
VPS13C-210ENST00000561258 EPB42P16452 691 aa8.57□□□□□ -1.04
VPS13C-210ENST00000561258 IREB2P48200 963 aaKnown RBP8.57□□□□□ -1.04
VPS13C-210ENST00000561258 KCNA1Q09470 495 aa8.57□□□□□ -1.04
VPS13C-210ENST00000561258 DGKZQ13574 1117 aa8.57□□□□□ -1.04
VPS13C-210ENST00000561258 DHX32Q7L7V1 743 aaKnown RBP8.57□□□□□ -1.04
VPS13C-210ENST00000561258 FBXO11Q86XK2 927 aa8.57□□□□□ -1.04
VPS13C-210ENST00000561258 IFT43Q96FT9 208 aa8.57□□□□□ -1.04
VPS13C-210ENST00000561258 SASH3O75995 380 aa8.56□□□□□ -1.04
VPS13C-210ENST00000561258 NOS3P29474 1203 aa8.56□□□□□ -1.04
VPS13C-210ENST00000561258 MFAP1P55081 439 aaKnown RBP8.56□□□□□ -1.04
VPS13C-210ENST00000561258 KANK4Q5T7N3 995 aaPredicted RBP8.56□□□□□ -1.04
VPS13C-210ENST00000561258 ELMSAN1Q6PJG2 1045 aa8.56□□□□□ -1.04
VPS13C-210ENST00000561258 LMOD1P29536 600 aaPredicted RBP8.55□□□□□ -1.04
VPS13C-210ENST00000561258 PCSK7Q16549 785 aa8.55□□□□□ -1.04
VPS13C-210ENST00000561258 HFE2Q6ZVN8 426 aa8.55□□□□□ -1.04
VPS13C-210ENST00000561258 WFDC8Q8IUA0 241 aa8.55□□□□□ -1.04
VPS13C-210ENST00000561258 ANKMY2Q8IV38 441 aa8.55□□□□□ -1.04
VPS13C-210ENST00000561258 DTWD1Q8N5C7 304 aa8.55□□□□□ -1.04
VPS13C-210ENST00000561258 TRPM4Q8TD43 1214 aa8.55□□□□□ -1.04
VPS13C-210ENST00000561258 FRRS1LQ9P0K9 344 aa8.55□□□□□ -1.04
VPS13C-210ENST00000561258 USP20Q9Y2K6 914 aa8.55□□□□□ -1.04
VPS13C-210ENST00000561258 USP17L15C9J2P7 530 aa8.54□□□□□ -1.04
VPS13C-210ENST00000561258 USP17L10C9JJH3 530 aa8.54□□□□□ -1.04
VPS13C-210ENST00000561258 USP17L13C9JLJ4 530 aa8.54□□□□□ -1.04
VPS13C-210ENST00000561258 USP17L12C9JPN9 530 aa8.54□□□□□ -1.04
VPS13C-210ENST00000561258 USP17L11C9JVI0 530 aa8.54□□□□□ -1.04
VPS13C-210ENST00000561258 USP17L21D6R901 530 aa8.54□□□□□ -1.04
VPS13C-210ENST00000561258 USP17L18D6R9N7 530 aa8.54□□□□□ -1.04
VPS13C-210ENST00000561258 USP17L22D6RA61 530 aa8.54□□□□□ -1.04
VPS13C-210ENST00000561258 USP17L17D6RBQ6 530 aa8.54□□□□□ -1.04
VPS13C-210ENST00000561258 USP17L19D6RCP7 530 aa8.54□□□□□ -1.04
VPS13C-210ENST00000561258 USP17L20D6RJB6 530 aa8.54□□□□□ -1.04
VPS13C-210ENST00000561258 RARAP10276 462 aa8.54□□□□□ -1.04
VPS13C-210ENST00000561258 ARSDP51689 593 aa8.54□□□□□ -1.04
VPS13C-210ENST00000561258 USP17L24Q0WX57 530 aa8.54□□□□□ -1.04
VPS13C-210ENST00000561258 QTRT2Q9H974 415 aaKnown RBP8.54□□□□□ -1.04
VPS13C-210ENST00000561258 MTMR7Q9Y216 660 aa8.54□□□□□ -1.04
VPS13C-210ENST00000561258 MICAL2O94851 1124 aa8.53□□□□□ -1.04
VPS13C-210ENST00000561258 ATG7O95352 703 aa8.53□□□□□ -1.04
VPS13C-210ENST00000561258 GPLD1P80108 840 aa8.53□□□□□ -1.04
VPS13C-210ENST00000561258 MEGF10Q96KG7 1140 aa8.53□□□□□ -1.04
VPS13C-210ENST00000561258 SMG9Q9H0W8 520 aaKnown RBP8.53□□□□□ -1.04
VPS13C-210ENST00000561258 CARNS1A5YM72 827 aa8.52□□□□□ -1.05
VPS13C-210ENST00000561258 DEAF1O75398 565 aaPredicted RBP8.52□□□□□ -1.05
VPS13C-210ENST00000561258 KRTAP1-3Q8IUG1 177 aa8.52□□□□□ -1.05
VPS13C-210ENST00000561258 TMEM88BA6NKF7 163 aa8.51□□□□□ -1.05
VPS13C-210ENST00000561258 FAM196BA6NMK8 535 aa8.51□□□□□ -1.05
VPS13C-210ENST00000561258 IGF2-ASQ6U949 168 aa8.51□□□□□ -1.05
VPS13C-210ENST00000561258 TTC9Q92623 222 aa8.51□□□□□ -1.05
VPS13C-210ENST00000561258 OPLAHO14841 1288 aa8.5□□□□□ -1.05
VPS13C-210ENST00000561258 EIF2AK2P19525 551 aaKnown RBP8.5□□□□□ -1.05
VPS13C-210ENST00000561258 WEE1P30291 646 aa8.5□□□□□ -1.05
VPS13C-210ENST00000561258 C11orf91Q3C1V1 193 aa8.5□□□□□ -1.05
VPS13C-210ENST00000561258 VRTNQ9H8Y1 702 aa8.5□□□□□ -1.05
VPS13C-210ENST00000561258 RTCBQ9Y3I0 505 aaKnown RBP8.5□□□□□ -1.05
VPS13C-210ENST00000561258 J3QW42 95 aa8.49□□□□□ -1.05
VPS13C-210ENST00000561258 VTI1AQ96AJ9 217 aa8.49□□□□□ -1.05
VPS13C-210ENST00000561258 MYO19Q96H55 970 aa8.49□□□□□ -1.05
VPS13C-210ENST00000561258 KRTAP4-12Q9BQ66 201 aa8.49□□□□□ -1.05
VPS13C-210ENST00000561258 LRFN2Q9ULH4 789 aa8.49□□□□□ -1.05
VPS13C-210ENST00000561258 DLL1O00548 723 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms