RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 ERC1Q8IUD2 1116 aa13.97□□□□□ -0.17
SNX1-212ENST00000560861 KLHDC4Q8TBB5 520 aa13.97□□□□□ -0.17
SNX1-212ENST00000560861 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.97□□□□□ -0.17
SNX1-212ENST00000560861 NRXN2Q9P2S2 1712 aa13.96□□□□□ -0.17
SNX1-212ENST00000560861 COL4A1P02462 1669 aa13.96□□□□□ -0.17
SNX1-212ENST00000560861 TNRC6CQ9HCJ0 1690 aaKnown RBP13.96□□□□□ -0.17
SNX1-212ENST00000560861 PHF14O94880 888 aa13.96□□□□□ -0.17
SNX1-212ENST00000560861 GYS1P13807 737 aa13.96□□□□□ -0.17
SNX1-212ENST00000560861 FAM161AQ3B820 660 aa13.96□□□□□ -0.17
SNX1-212ENST00000560861 SLC10A5Q5PT55 438 aa13.96□□□□□ -0.17
SNX1-212ENST00000560861 ATG9AQ7Z3C6 839 aa13.96□□□□□ -0.17
SNX1-212ENST00000560861 BACH2Q9BYV9 841 aa13.96□□□□□ -0.17
SNX1-212ENST00000560861 STAP2Q9UGK3 403 aa13.96□□□□□ -0.17
SNX1-212ENST00000560861 RIC1Q4ADV7 1423 aa13.96□□□□□ -0.18
SNX1-212ENST00000560861 ABCC12Q96J65 1359 aa13.96□□□□□ -0.18
SNX1-212ENST00000560861 CIAO1O76071 339 aa13.95□□□□□ -0.18
SNX1-212ENST00000560861 RFC4P35249 363 aa13.95□□□□□ -0.18
SNX1-212ENST00000560861 BMP2KLQ5H9B9 411 aa13.95□□□□□ -0.18
SNX1-212ENST00000560861 RNF39Q9H2S5 420 aa13.95□□□□□ -0.18
SNX1-212ENST00000560861 IL1RAPL2Q9NP60 686 aa13.95□□□□□ -0.18
SNX1-212ENST00000560861 FBXO3Q9UK99 471 aa13.95□□□□□ -0.18
SNX1-212ENST00000560861 A0A1B0GUL6 1792 aa13.94□□□□□ -0.18
SNX1-212ENST00000560861 EYA2O00167 538 aa13.94□□□□□ -0.18
SNX1-212ENST00000560861 HCLS1P14317 486 aaPredicted RBP13.94□□□□□ -0.18
SNX1-212ENST00000560861 GSPT1P15170 499 aaKnown RBP13.94□□□□□ -0.18
SNX1-212ENST00000560861 PDE1AP54750 535 aa13.94□□□□□ -0.18
SNX1-212ENST00000560861 G3BP1Q13283 466 aaKnown RBP eCLIP13.94□□□□□ -0.18
SNX1-212ENST00000560861 NFIXQ14938 502 aa13.94□□□□□ -0.18
SNX1-212ENST00000560861 TTC22Q5TAA0 569 aa13.94□□□□□ -0.18
SNX1-212ENST00000560861 GREM2Q9H772 168 aa13.94□□□□□ -0.18
SNX1-212ENST00000560861 AOX1Q06278 1338 aa13.93□□□□□ -0.18
SNX1-212ENST00000560861 TM4SF1P30408 202 aa13.93□□□□□ -0.18
SNX1-212ENST00000560861 EZH2Q15910 746 aaKnown RBP13.93□□□□□ -0.18
SNX1-212ENST00000560861 ERFEQ4G0M1 354 aa13.93□□□□□ -0.18
SNX1-212ENST00000560861 NUTM1Q86Y26 1132 aa13.93□□□□□ -0.18
SNX1-212ENST00000560861 ZNF594Q96JF6 807 aaPredicted RBP13.93□□□□□ -0.18
SNX1-212ENST00000560861 SETDB2Q96T68 719 aa13.93□□□□□ -0.18
SNX1-212ENST00000560861 SIL1Q9H173 461 aa13.93□□□□□ -0.18
SNX1-212ENST00000560861 ANO8Q9HCE9 1232 aaPredicted RBP13.93□□□□□ -0.18
SNX1-212ENST00000560861 ZBTB47Q9UFB7 747 aaPredicted RBP13.93□□□□□ -0.18
SNX1-212ENST00000560861 CARMIL3Q8ND23 1372 aa13.93□□□□□ -0.18
SNX1-212ENST00000560861 PNPLA7Q6ZV29 1317 aa13.92□□□□□ -0.18
SNX1-212ENST00000560861 SPEF2Q9C093 1822 aa13.92□□□□□ -0.18
SNX1-212ENST00000560861 FAM177BA6PVY3 158 aa13.92□□□□□ -0.18
SNX1-212ENST00000560861 MX1P20591 662 aa13.92□□□□□ -0.18
SNX1-212ENST00000560861 EN1Q05925 392 aaPredicted RBP13.92□□□□□ -0.18
SNX1-212ENST00000560861 OS9Q13438 667 aaPredicted RBP13.92□□□□□ -0.18
SNX1-212ENST00000560861 SF3B3Q15393 1217 aaKnown RBP13.92□□□□□ -0.18
SNX1-212ENST00000560861 BICDL1Q6ZP65 573 aa13.92□□□□□ -0.18
SNX1-212ENST00000560861 C3orf67Q6ZVT6 689 aa13.92□□□□□ -0.18
SNX1-212ENST00000560861 COL23A1Q86Y22 540 aaPredicted RBP13.92□□□□□ -0.18
SNX1-212ENST00000560861 EAF2Q96CJ1 260 aaPredicted RBP13.92□□□□□ -0.18
SNX1-212ENST00000560861 PUS3Q9BZE2 481 aaKnown RBP13.92□□□□□ -0.18
SNX1-212ENST00000560861 NYXQ9GZU5 481 aa13.92□□□□□ -0.18
SNX1-212ENST00000560861 CHMP3Q9Y3E7 222 aa13.92□□□□□ -0.18
SNX1-212ENST00000560861 TAF1P21675 1872 aa13.91□□□□□ -0.18
SNX1-212ENST00000560861 HSP90B1P14625 803 aaKnown RBP13.91□□□□□ -0.18
SNX1-212ENST00000560861 ITGA6P23229 1130 aa13.91□□□□□ -0.18
SNX1-212ENST00000560861 IL15P40933 162 aaPredicted RBP13.91□□□□□ -0.18
SNX1-212ENST00000560861 CCDC57Q2TAC2 916 aa13.91□□□□□ -0.18
SNX1-212ENST00000560861 LRRC24Q50LG9 513 aa13.91□□□□□ -0.18
SNX1-212ENST00000560861 FLAD1Q8NFF5 587 aa13.91□□□□□ -0.18
SNX1-212ENST00000560861 GPR108Q9NPR9 543 aa13.91□□□□□ -0.18
SNX1-212ENST00000560861 ANKRD31Q8N7Z5 1873 aa13.91□□□□□ -0.18
SNX1-212ENST00000560861 ZNF609O15014 1411 aa13.9□□□□□ -0.18
SNX1-212ENST00000560861 ARAP2Q8WZ64 1704 aa13.9□□□□□ -0.18
SNX1-212ENST00000560861 DDR1Q08345 913 aa13.9□□□□□ -0.18
SNX1-212ENST00000560861 TFCP2Q12800 502 aa13.9□□□□□ -0.18
SNX1-212ENST00000560861 IFIT5Q13325 482 aaKnown RBP13.9□□□□□ -0.18
SNX1-212ENST00000560861 SF3B2Q13435 895 aaKnown RBP13.9□□□□□ -0.18
SNX1-212ENST00000560861 TNNI3KQ59H18 835 aa13.9□□□□□ -0.18
SNX1-212ENST00000560861 CLASRPQ8N2M8 674 aaKnown RBP13.9□□□□□ -0.18
SNX1-212ENST00000560861 PI4K2BQ8TCG2 481 aa13.9□□□□□ -0.18
SNX1-212ENST00000560861 CCDC85AQ96PX6 553 aaPredicted RBP13.9□□□□□ -0.18
SNX1-212ENST00000560861 TFCP2L1Q9NZI6 479 aa13.9□□□□□ -0.18
SNX1-212ENST00000560861 FPGT-TNNI3KV9GXZ4 949 aa13.9□□□□□ -0.18
SNX1-212ENST00000560861 ANKRD18BA2A2Z9 1011 aa13.89□□□□□ -0.19
SNX1-212ENST00000560861 NBPF5PQ86XG9 351 aaPredicted RBP13.89□□□□□ -0.19
SNX1-212ENST00000560861 RIPOR2Q9Y4F9 1068 aa13.89□□□□□ -0.19
SNX1-212ENST00000560861 AK9Q5TCS8 1911 aa13.89□□□□□ -0.19
SNX1-212ENST00000560861 TTC41PQ6P2S7 1318 aa13.89□□□□□ -0.19
SNX1-212ENST00000560861 POLRMTO00411 1230 aaKnown RBP13.88□□□□□ -0.19
SNX1-212ENST00000560861 NPM3O75607 178 aaKnown RBP13.88□□□□□ -0.19
SNX1-212ENST00000560861 BAG6P46379 1132 aa13.88□□□□□ -0.19
SNX1-212ENST00000560861 SLC15A2Q16348 729 aa13.88□□□□□ -0.19
SNX1-212ENST00000560861 CCDC152Q4G0S7 254 aa13.88□□□□□ -0.19
SNX1-212ENST00000560861 TSHZ3Q63HK5 1081 aa13.88□□□□□ -0.19
SNX1-212ENST00000560861 PRR5LQ6MZQ0 368 aa13.88□□□□□ -0.19
SNX1-212ENST00000560861 TPTE2Q6XPS3 522 aa13.88□□□□□ -0.19
SNX1-212ENST00000560861 AACSQ86V21 672 aa13.88□□□□□ -0.19
SNX1-212ENST00000560861 VGLL2Q8N8G2 317 aa13.88□□□□□ -0.19
SNX1-212ENST00000560861 SEC31BQ9NQW1 1179 aa13.88□□□□□ -0.19
SNX1-212ENST00000560861 TLR7Q9NYK1 1049 aaKnown RBP13.88□□□□□ -0.19
SNX1-212ENST00000560861 SDSP20132 328 aa13.87□□□□□ -0.19
SNX1-212ENST00000560861 DBNLQ9UJU6 430 aaKnown RBP13.87□□□□□ -0.19
SNX1-212ENST00000560861 SERPINB2P05120 415 aa13.86□□□□□ -0.19
SNX1-212ENST00000560861 NLGN1Q8N2Q7 840 aa13.86□□□□□ -0.19
SNX1-212ENST00000560861 CCDC8Q9H0W5 538 aaPredicted RBP13.86□□□□□ -0.19
SNX1-212ENST00000560861 ECHDC1Q9NTX5 307 aa13.86□□□□□ -0.19
SNX1-212ENST00000560861 SEC24BO95487 1268 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms