RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 CCDC93Q567U6 631 aa11.9□□□□□ -0.5
LDLR-211ENST00000560173 OLFM4Q6UX06 510 aa11.9□□□□□ -0.5
LDLR-211ENST00000560173 TNS4Q8IZW8 715 aa11.9□□□□□ -0.5
LDLR-211ENST00000560173 JMYQ8N9B5 988 aa11.9□□□□□ -0.5
LDLR-211ENST00000560173 KLRG1Q96E93 195 aa11.9□□□□□ -0.5
LDLR-211ENST00000560173 LTBP3Q9NS15 1303 aa11.89□□□□□ -0.51
LDLR-211ENST00000560173 FER1L6Q2WGJ9 1857 aa11.89□□□□□ -0.51
LDLR-211ENST00000560173 PPEF1O14829 653 aaPredicted RBP11.89□□□□□ -0.51
LDLR-211ENST00000560173 PDE8AO60658 829 aa11.89□□□□□ -0.51
LDLR-211ENST00000560173 BRPF1P55201 1214 aaPredicted RBP11.89□□□□□ -0.51
LDLR-211ENST00000560173 CASP7P55210 303 aa11.89□□□□□ -0.51
LDLR-211ENST00000560173 GRAPQ13588 217 aa11.89□□□□□ -0.51
LDLR-211ENST00000560173 C9orf131Q5VYM1 1079 aa11.89□□□□□ -0.51
LDLR-211ENST00000560173 DDX46Q7L014 1031 aaKnown RBP11.89□□□□□ -0.51
LDLR-211ENST00000560173 UBE3BQ7Z3V4 1068 aa11.89□□□□□ -0.51
LDLR-211ENST00000560173 SLC51AQ86UW1 340 aa11.89□□□□□ -0.51
LDLR-211ENST00000560173 GRAPLQ8TC17 118 aaPredicted RBP11.89□□□□□ -0.51
LDLR-211ENST00000560173 ALDH1L1O75891 902 aa11.88□□□□□ -0.51
LDLR-211ENST00000560173 HTRA3P83110 453 aa11.88□□□□□ -0.51
LDLR-211ENST00000560173 CC2D2BQ6DHV5 1058 aa11.88□□□□□ -0.51
LDLR-211ENST00000560173 SLC4A10Q6U841 1118 aa11.88□□□□□ -0.51
LDLR-211ENST00000560173 TAOK3Q9H2K8 898 aa11.88□□□□□ -0.51
LDLR-211ENST00000560173 COL4A1P02462 1669 aa11.87□□□□□ -0.51
LDLR-211ENST00000560173 SBF1O95248 1867 aa11.87□□□□□ -0.51
LDLR-211ENST00000560173 BBOX1O75936 387 aa11.87□□□□□ -0.51
LDLR-211ENST00000560173 LMNB1P20700 586 aa11.87□□□□□ -0.51
LDLR-211ENST00000560173 CTSWP56202 376 aa11.87□□□□□ -0.51
LDLR-211ENST00000560173 CCDC152Q4G0S7 254 aa11.87□□□□□ -0.51
LDLR-211ENST00000560173 RTKN2Q8IZC4 609 aa11.87□□□□□ -0.51
LDLR-211ENST00000560173 PLA2G12BQ9BX93 195 aa11.87□□□□□ -0.51
LDLR-211ENST00000560173 SRCIN1Q9C0H9 1055 aa11.87□□□□□ -0.51
LDLR-211ENST00000560173 NMRK2Q9NPI5 230 aa11.87□□□□□ -0.51
LDLR-211ENST00000560173 RNF181Q9P0P0 153 aa11.87□□□□□ -0.51
LDLR-211ENST00000560173 ATP6V0A2Q9Y487 856 aa11.87□□□□□ -0.51
LDLR-211ENST00000560173 KIF16BQ96L93 1317 aa11.86□□□□□ -0.51
LDLR-211ENST00000560173 GRM8O00222 908 aa11.86□□□□□ -0.51
LDLR-211ENST00000560173 FKBP4Q02790 459 aaKnown RBP eCLIP11.86□□□□□ -0.51
LDLR-211ENST00000560173 CELF1Q92879 486 aaKnown RBP11.86□□□□□ -0.51
LDLR-211ENST00000560173 NOB1Q9ULX3 412 aaKnown RBP11.86□□□□□ -0.51
LDLR-211ENST00000560173 RTL9Q8NET4 1388 aa11.86□□□□□ -0.51
LDLR-211ENST00000560173 TAF1P21675 1872 aa11.85□□□□□ -0.51
LDLR-211ENST00000560173 GRIPAP1Q4V328 841 aa11.85□□□□□ -0.51
LDLR-211ENST00000560173 TMC4Q7Z404 712 aa11.85□□□□□ -0.51
LDLR-211ENST00000560173 SP8Q8IXZ3 490 aa11.85□□□□□ -0.51
LDLR-211ENST00000560173 TTLL11Q8NHH1 800 aa11.85□□□□□ -0.51
LDLR-211ENST00000560173 RBM46Q8TBY0 533 aaKnown RBP11.85□□□□□ -0.51
LDLR-211ENST00000560173 CCDC85AQ96PX6 553 aaPredicted RBP11.85□□□□□ -0.51
LDLR-211ENST00000560173 PSMD1Q99460 953 aa11.85□□□□□ -0.51
LDLR-211ENST00000560173 API5Q9BZZ5 524 aaKnown RBP11.85□□□□□ -0.51
LDLR-211ENST00000560173 SEC31BQ9NQW1 1179 aa11.85□□□□□ -0.51
LDLR-211ENST00000560173 LRRC37AA6NMS7 1700 aa11.85□□□□□ -0.51
LDLR-211ENST00000560173 ZC3H4Q9UPT8 1303 aaKnown RBP11.85□□□□□ -0.51
LDLR-211ENST00000560173 MYH3P11055 1940 aa11.84□□□□□ -0.51
LDLR-211ENST00000560173 BCAR3O75815 825 aa11.84□□□□□ -0.51
LDLR-211ENST00000560173 RPS8P62241 208 aaKnown RBP11.84□□□□□ -0.51
LDLR-211ENST00000560173 ARHGAP45Q92619 1136 aa11.84□□□□□ -0.51
LDLR-211ENST00000560173 GREM2Q9H772 168 aa11.84□□□□□ -0.51
LDLR-211ENST00000560173 ZNF277Q9NRM2 450 aaPredicted RBP11.84□□□□□ -0.51
LDLR-211ENST00000560173 C9orf78Q9NZ63 289 aaPredicted RBP11.84□□□□□ -0.51
LDLR-211ENST00000560173 UTYO14607 1347 aa11.84□□□□□ -0.51
LDLR-211ENST00000560173 TIAM2Q8IVF5 1701 aa11.83□□□□□ -0.52
LDLR-211ENST00000560173 CSF1RP07333 972 aa11.83□□□□□ -0.52
LDLR-211ENST00000560173 FOXO4P98177 505 aa11.83□□□□□ -0.52
LDLR-211ENST00000560173 FAM161AQ3B820 660 aa11.83□□□□□ -0.52
LDLR-211ENST00000560173 TMX4Q9H1E5 349 aaPredicted RBP11.83□□□□□ -0.52
LDLR-211ENST00000560173 DUOX1Q9NRD9 1551 aa11.83□□□□□ -0.52
LDLR-211ENST00000560173 NBPF7P0C2Y1 421 aaPredicted RBP11.82□□□□□ -0.52
LDLR-211ENST00000560173 IARSP41252 1262 aaKnown RBP11.82□□□□□ -0.52
LDLR-211ENST00000560173 CCT4P50991 539 aaKnown RBP11.82□□□□□ -0.52
LDLR-211ENST00000560173 FSTL1Q12841 308 aa11.82□□□□□ -0.52
LDLR-211ENST00000560173 EPHA10Q5JZY3 1008 aa11.82□□□□□ -0.52
LDLR-211ENST00000560173 DPP8Q6V1X1 898 aaPredicted RBP11.82□□□□□ -0.52
LDLR-211ENST00000560173 CDC5LQ99459 802 aaKnown RBP11.82□□□□□ -0.52
LDLR-211ENST00000560173 RTFDC1Q9BY42 306 aaPredicted RBP11.82□□□□□ -0.52
LDLR-211ENST00000560173 CCDC88AQ3V6T2 1871 aa11.82□□□□□ -0.52
LDLR-211ENST00000560173 DICER1Q9UPY3 1922 aaKnown RBP11.82□□□□□ -0.52
LDLR-211ENST00000560173 COL4A5P29400 1685 aa11.81□□□□□ -0.52
LDLR-211ENST00000560173 LTBP1Q14766 1721 aa11.81□□□□□ -0.52
LDLR-211ENST00000560173 IPO8O15397 1037 aaKnown RBP11.81□□□□□ -0.52
LDLR-211ENST00000560173 TRIM27P14373 513 aa11.81□□□□□ -0.52
LDLR-211ENST00000560173 ATF7IPQ6VMQ6 1270 aa11.81□□□□□ -0.52
LDLR-211ENST00000560173 ANKRD18AQ8IVF6 992 aa11.81□□□□□ -0.52
LDLR-211ENST00000560173 C16orf71Q8IYS4 520 aaPredicted RBP11.81□□□□□ -0.52
LDLR-211ENST00000560173 MPNDQ8N594 471 aa11.81□□□□□ -0.52
LDLR-211ENST00000560173 KAZALD1Q96I82 304 aa11.81□□□□□ -0.52
LDLR-211ENST00000560173 SUCLG2Q96I99 432 aa11.81□□□□□ -0.52
LDLR-211ENST00000560173 USP44Q9H0E7 712 aa11.81□□□□□ -0.52
LDLR-211ENST00000560173 ITGA6P23229 1130 aa11.8□□□□□ -0.52
LDLR-211ENST00000560173 GPSM2P81274 684 aa11.8□□□□□ -0.52
LDLR-211ENST00000560173 LMBR1LQ6UX01 489 aa11.8□□□□□ -0.52
LDLR-211ENST00000560173 SUPT20HQ8NEM7 779 aa11.8□□□□□ -0.52
LDLR-211ENST00000560173 FRAT1Q92837 279 aaPredicted RBP11.8□□□□□ -0.52
LDLR-211ENST00000560173 TNNQ9UQP3 1299 aa11.8□□□□□ -0.52
LDLR-211ENST00000560173 SLC34A2O95436 690 aa11.79□□□□□ -0.52
LDLR-211ENST00000560173 RABL6Q3YEC7 729 aaPredicted RBP11.79□□□□□ -0.52
LDLR-211ENST00000560173 ZKSCAN2Q63HK3 967 aa11.79□□□□□ -0.52
LDLR-211ENST00000560173 INTS3Q68E01 1043 aaKnown RBP11.79□□□□□ -0.52
LDLR-211ENST00000560173 ANKRD44Q8N8A2 993 aa11.79□□□□□ -0.52
LDLR-211ENST00000560173 BSDC1Q9NW68 430 aaPredicted RBP11.79□□□□□ -0.52
LDLR-211ENST00000560173 PODXL2Q9NZ53 605 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms