RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 ADAMTSL1Q8N6G6 1762 aa15.19■□□□□ 0.02
USP3-214ENST00000559718 HSP90AB3PQ58FF7 597 aa15.18■□□□□ 0.02
USP3-214ENST00000559718 HDGFL1Q5TGJ6 251 aa15.18■□□□□ 0.02
USP3-214ENST00000559718 MAP1SQ66K74 1059 aaPredicted RBP15.18■□□□□ 0.02
USP3-214ENST00000559718 PRKRIP1Q9H875 184 aaPredicted RBP15.18■□□□□ 0.02
USP3-214ENST00000559718 TRMT112Q9UI30 125 aaKnown RBP15.18■□□□□ 0.02
USP3-214ENST00000559718 LAMB2P55268 1798 aa15.18■□□□□ 0.02
USP3-214ENST00000559718 LTBP1Q14766 1721 aa15.17■□□□□ 0.02
USP3-214ENST00000559718 PPIP5K2O43314 1243 aa15.17■□□□□ 0.02
USP3-214ENST00000559718 SCNN1DP51172 638 aa15.17■□□□□ 0.02
USP3-214ENST00000559718 AOC3Q16853 763 aa15.17■□□□□ 0.02
USP3-214ENST00000559718 GRIPAP1Q4V328 841 aa15.17■□□□□ 0.02
USP3-214ENST00000559718 SH3TC1Q8TE82 1336 aa15.17■□□□□ 0.02
USP3-214ENST00000559718 EPS15P42566 896 aa15.16■□□□□ 0.02
USP3-214ENST00000559718 DUSP27Q5VZP5 1158 aa15.16■□□□□ 0.02
USP3-214ENST00000559718 PNMA8AQ86V59 439 aaPredicted RBP15.16■□□□□ 0.02
USP3-214ENST00000559718 NIM1KQ8IY84 436 aa15.16■□□□□ 0.02
USP3-214ENST00000559718 CNTROBQ8N137 903 aa15.16■□□□□ 0.02
USP3-214ENST00000559718 CFAP44Q96MT7 982 aa15.16■□□□□ 0.02
USP3-214ENST00000559718 MBIPQ9NS73 344 aa15.16■□□□□ 0.02
USP3-214ENST00000559718 TAF1P21675 1872 aa15.16■□□□□ 0.02
USP3-214ENST00000559718 CNTNAP1P78357 1384 aa15.15■□□□□ 0.02
USP3-214ENST00000559718 TMEM88BA6NKF7 163 aa15.15■□□□□ 0.02
USP3-214ENST00000559718 ATP5J2-PTCD1G3V325 749 aa15.15■□□□□ 0.02
USP3-214ENST00000559718 BBOX1O75936 387 aa15.15■□□□□ 0.02
USP3-214ENST00000559718 HOXB7P09629 217 aa15.15■□□□□ 0.02
USP3-214ENST00000559718 PLBD2Q8NHP8 589 aa15.15■□□□□ 0.02
USP3-214ENST00000559718 APAF1O14727 1248 aa15.14■□□□□ 0.01
USP3-214ENST00000559718 LMOD1P29536 600 aaPredicted RBP15.14■□□□□ 0.01
USP3-214ENST00000559718 GRAPQ13588 217 aa15.14■□□□□ 0.01
USP3-214ENST00000559718 ANKRD13DQ6ZTN6 518 aa15.14■□□□□ 0.01
USP3-214ENST00000559718 SP8Q8IXZ3 490 aa15.14■□□□□ 0.01
USP3-214ENST00000559718 GRAPLQ8TC17 118 aaPredicted RBP15.14■□□□□ 0.01
USP3-214ENST00000559718 FAM89AQ96GI7 184 aa15.14■□□□□ 0.01
USP3-214ENST00000559718 ISCA1Q9BUE6 129 aa15.14■□□□□ 0.01
USP3-214ENST00000559718 RTFDC1Q9BY42 306 aaPredicted RBP15.14■□□□□ 0.01
USP3-214ENST00000559718 TMX4Q9H1E5 349 aaPredicted RBP15.14■□□□□ 0.01
USP3-214ENST00000559718 DBF4Q9UBU7 674 aaPredicted RBP15.14■□□□□ 0.01
USP3-214ENST00000559718 ZNF853P0CG23 659 aa15.13■□□□□ 0.01
USP3-214ENST00000559718 FMR1Q06787 632 aaKnown RBP eCLIP15.13■□□□□ 0.01
USP3-214ENST00000559718 CXCL9Q07325 125 aa15.13■□□□□ 0.01
USP3-214ENST00000559718 RTL5Q5HYW3 569 aaPredicted RBP15.13■□□□□ 0.01
USP3-214ENST00000559718 DPP8Q6V1X1 898 aaPredicted RBP15.13■□□□□ 0.01
USP3-214ENST00000559718 DDX46Q7L014 1031 aaKnown RBP15.13■□□□□ 0.01
USP3-214ENST00000559718 MPNDQ8N594 471 aa15.13■□□□□ 0.01
USP3-214ENST00000559718 ELL2O00472 640 aaPredicted RBP15.12■□□□□ 0.01
USP3-214ENST00000559718 PRR29P0C7W0 189 aa15.12■□□□□ 0.01
USP3-214ENST00000559718 VEGFBP49765 207 aa15.12■□□□□ 0.01
USP3-214ENST00000559718 TNS4Q8IZW8 715 aa15.12■□□□□ 0.01
USP3-214ENST00000559718 SUPT20HQ8NEM7 779 aa15.12■□□□□ 0.01
USP3-214ENST00000559718 HYPKQ9NX55 129 aa15.12■□□□□ 0.01
USP3-214ENST00000559718 ZNRF3Q9ULT6 936 aa15.12■□□□□ 0.01
USP3-214ENST00000559718 DDX60Q8IY21 1712 aaKnown RBP15.12■□□□□ 0.01
USP3-214ENST00000559718 VPS33BQ9H267 617 aa15.11■□□□□ 0.01
USP3-214ENST00000559718 PHAXQ9H814 394 aaKnown RBP15.11■□□□□ 0.01
USP3-214ENST00000559718 COL4A1P02462 1669 aa15.11■□□□□ 0.01
USP3-214ENST00000559718 RAD17O75943 681 aa15.1■□□□□ 0.01
USP3-214ENST00000559718 KIAA2012Q0VF49 1180 aa15.1■□□□□ 0.01
USP3-214ENST00000559718 CELF1Q92879 486 aaKnown RBP15.1■□□□□ 0.01
USP3-214ENST00000559718 IFT57Q9NWB7 429 aa15.1■□□□□ 0.01
USP3-214ENST00000559718 GPRC5DQ9NZD1 345 aa15.1■□□□□ 0.01
USP3-214ENST00000559718 DUOX1Q9NRD9 1551 aa15.1■□□□□ 0.01
USP3-214ENST00000559718 YDJCA8MPS7 323 aa15.09■□□□□ 0.01
USP3-214ENST00000559718 TRAF5O00463 557 aa15.09■□□□□ 0.01
USP3-214ENST00000559718 FOXN1O15353 648 aa15.09■□□□□ 0.01
USP3-214ENST00000559718 GMPSP49915 693 aaPredicted RBP15.09■□□□□ 0.01
USP3-214ENST00000559718 SF3B3Q15393 1217 aaKnown RBP15.09■□□□□ 0.01
USP3-214ENST00000559718 CCDC184Q52MB2 194 aa15.09■□□□□ 0.01
USP3-214ENST00000559718 USP50Q70EL3 339 aaPredicted RBP15.09■□□□□ 0.01
USP3-214ENST00000559718 C8orf58Q8NAV2 365 aa15.09■□□□□ 0.01
USP3-214ENST00000559718 RASSF10A6NK89 507 aa15.08■□□□□ 0
USP3-214ENST00000559718 GNAI1P63096 354 aa15.08■□□□□ 0
USP3-214ENST00000559718 TRIM28Q13263 835 aaKnown RBP15.08■□□□□ 0
USP3-214ENST00000559718 DEFB115Q30KQ5 88 aa15.08■□□□□ 0
USP3-214ENST00000559718 CIAPIN1Q6FI81 312 aa15.08■□□□□ 0
USP3-214ENST00000559718 RIC3Q7Z5B4 369 aa15.08■□□□□ 0
USP3-214ENST00000559718 ADARB2Q9NS39 739 aaKnown RBP15.08■□□□□ 0
USP3-214ENST00000559718 ABT1Q9ULW3 272 aaKnown RBP15.08■□□□□ 0
USP3-214ENST00000559718 LRRC37AA6NMS7 1700 aa15.07■□□□□ 0
USP3-214ENST00000559718 SHTN1A0MZ66 631 aa15.07■□□□□ 0
USP3-214ENST00000559718 IRS4O14654 1257 aaPredicted RBP15.07■□□□□ 0
USP3-214ENST00000559718 GOLGA2Q08379 1002 aa15.07■□□□□ 0
USP3-214ENST00000559718 NSFL1CQ9UNZ2 370 aaKnown RBP15.07■□□□□ 0
USP3-214ENST00000559718 GPSM2P81274 684 aa15.06■□□□□ 0
USP3-214ENST00000559718 CST9Q5W186 159 aa15.06■□□□□ 0
USP3-214ENST00000559718 TMC4Q7Z404 712 aa15.06■□□□□ 0
USP3-214ENST00000559718 TSPYL6Q8N831 410 aa15.06■□□□□ 0
USP3-214ENST00000559718 JARID2Q92833 1246 aaPredicted RBP15.06■□□□□ 0
USP3-214ENST00000559718 MYD88Q99836 296 aa15.06■□□□□ 0
USP3-214ENST00000559718 POLLQ9UGP5 575 aa15.06■□□□□ 0
USP3-214ENST00000559718 RIMBP2O15034 1052 aa15.05■□□□□ -0
USP3-214ENST00000559718 HIRAP54198 1017 aaPredicted RBP15.05■□□□□ -0
USP3-214ENST00000559718 CALD1Q05682 793 aaKnown RBP15.05■□□□□ -0
USP3-214ENST00000559718 WASHC4Q2M389 1173 aa15.05■□□□□ -0
USP3-214ENST00000559718 ZBTB38Q8NAP3 1195 aaPredicted RBP15.05■□□□□ -0
USP3-214ENST00000559718 TRPM4Q8TD43 1214 aa15.05■□□□□ -0
USP3-214ENST00000559718 GPR101Q96P66 508 aaPredicted RBP15.05■□□□□ -0
USP3-214ENST00000559718 BCL2L13Q9BXK5 485 aa15.05■□□□□ -0
USP3-214ENST00000559718 DBNDD1Q9H9R9 158 aa15.05■□□□□ -0
USP3-214ENST00000559718 SEC31BQ9NQW1 1179 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms