RNA–Protein interactions for RNA: ENST00000557945.5

CASC4-204, Transcript of cancer susceptibility 4, humanhuman

TSL 1 (best)

Gene CASC4, Length 1,386 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-204ENST00000557945 LAMB2P55268 1798 aa26.68■■□□□ 1.86
CASC4-204ENST00000557945 NPR1P16066 1061 aa26.68■■□□□ 1.86
CASC4-204ENST00000557945 RBM17Q96I25 401 aaKnown RBP26.68■■□□□ 1.86
CASC4-204ENST00000557945 KAZALD1Q96I82 304 aa26.68■■□□□ 1.86
CASC4-204ENST00000557945 CHMP3Q9Y3E7 222 aa26.68■■□□□ 1.86
CASC4-204ENST00000557945 LRRFIP2Q9Y608 721 aaKnown RBP26.68■■□□□ 1.86
CASC4-204ENST00000557945 LMBR1LQ6UX01 489 aa26.67■■□□□ 1.86
CASC4-204ENST00000557945 TTLL11Q8NHH1 800 aa26.67■■□□□ 1.86
CASC4-204ENST00000557945 BICC1Q9H694 974 aaKnown RBP26.67■■□□□ 1.86
CASC4-204ENST00000557945 WWC3Q9ULE0 1092 aa26.67■■□□□ 1.86
CASC4-204ENST00000557945 GNAI2P04899 355 aa26.66■■□□□ 1.86
CASC4-204ENST00000557945 STYK1Q6J9G0 422 aa26.66■■□□□ 1.86
CASC4-204ENST00000557945 DDX46Q7L014 1031 aaKnown RBP26.66■■□□□ 1.86
CASC4-204ENST00000557945 CRBNQ96SW2 442 aa26.66■■□□□ 1.86
CASC4-204ENST00000557945 CHMP4BQ9H444 224 aaKnown RBP26.66■■□□□ 1.86
CASC4-204ENST00000557945 SRCAPQ6ZRS2 3230 aa26.66■■□□□ 1.86
CASC4-204ENST00000557945 KCNA3P22001 575 aa26.65■■□□□ 1.86
CASC4-204ENST00000557945 PIM2Q9P1W9 311 aa26.65■■□□□ 1.86
CASC4-204ENST00000557945 COL11A2P13942 1736 aaPredicted RBP26.65■■□□□ 1.86
CASC4-204ENST00000557945 CSF1RP07333 972 aa26.64■■□□□ 1.86
CASC4-204ENST00000557945 GREM2Q9H772 168 aa26.64■■□□□ 1.86
CASC4-204ENST00000557945 C1orf115Q9H7X2 142 aa26.64■■□□□ 1.86
CASC4-204ENST00000557945 HOXA10P31260 410 aaPredicted RBP26.63■■□□□ 1.85
CASC4-204ENST00000557945 CNKSR1Q969H4 720 aa26.63■■□□□ 1.85
CASC4-204ENST00000557945 KIAA1551Q9HCM1 1747 aa26.63■■□□□ 1.85
CASC4-204ENST00000557945 IRX6P78412 446 aaPredicted RBP26.62■■□□□ 1.85
CASC4-204ENST00000557945 FAM161AQ3B820 660 aa26.62■■□□□ 1.85
CASC4-204ENST00000557945 ANKRD44Q8N8A2 993 aa26.62■■□□□ 1.85
CASC4-204ENST00000557945 ALDH1B1P30837 517 aa26.61■■□□□ 1.85
CASC4-204ENST00000557945 RABL6Q3YEC7 729 aaPredicted RBP26.61■■□□□ 1.85
CASC4-204ENST00000557945 TTLL6Q8N841 843 aa26.61■■□□□ 1.85
CASC4-204ENST00000557945 CRAMP1Q96RY5 1269 aa26.61■■□□□ 1.85
CASC4-204ENST00000557945 SEC31BQ9NQW1 1179 aa26.61■■□□□ 1.85
CASC4-204ENST00000557945 MYH3P11055 1940 aa26.61■■□□□ 1.85
CASC4-204ENST00000557945 ZBTB40Q9NUA8 1239 aa26.6■■□□□ 1.85
CASC4-204ENST00000557945 ITGA6P23229 1130 aa26.59■■□□□ 1.85
CASC4-204ENST00000557945 IFIT5Q13325 482 aaKnown RBP26.59■■□□□ 1.85
CASC4-204ENST00000557945 GRAPQ13588 217 aa26.59■■□□□ 1.85
CASC4-204ENST00000557945 CCDC57Q2TAC2 916 aa26.59■■□□□ 1.85
CASC4-204ENST00000557945 DALRD3Q5D0E6 543 aaKnown RBP26.59■■□□□ 1.85
CASC4-204ENST00000557945 GRAPLQ8TC17 118 aaPredicted RBP26.59■■□□□ 1.85
CASC4-204ENST00000557945 RTL9Q8NET4 1388 aa26.59■■□□□ 1.85
CASC4-204ENST00000557945 ANKRD18BA2A2Z9 1011 aa26.58■■□□□ 1.85
CASC4-204ENST00000557945 PELP1Q8IZL8 1130 aaKnown RBP26.58■■□□□ 1.85
CASC4-204ENST00000557945 BCS1LQ9Y276 419 aa26.58■■□□□ 1.85
CASC4-204ENST00000557945 DLEC1Q9Y238 1755 aa26.58■■□□□ 1.85
CASC4-204ENST00000557945 PRPF40BQ6NWY9 871 aaKnown RBP26.58■■□□□ 1.84
CASC4-204ENST00000557945 CELF1Q92879 486 aaKnown RBP26.58■■□□□ 1.84
CASC4-204ENST00000557945 CDC5LQ99459 802 aaKnown RBP26.58■■□□□ 1.84
CASC4-204ENST00000557945 TAF7LQ5H9L4 462 aa26.57■■□□□ 1.84
CASC4-204ENST00000557945 ANKRD18AQ8IVF6 992 aa26.57■■□□□ 1.84
CASC4-204ENST00000557945 ZNF219Q9P2Y4 722 aaPredicted RBP26.57■■□□□ 1.84
CASC4-204ENST00000557945 BBOX1O75936 387 aa26.56■■□□□ 1.84
CASC4-204ENST00000557945 RPS8P62241 208 aaKnown RBP26.56■■□□□ 1.84
CASC4-204ENST00000557945 PPEF1O14829 653 aaPredicted RBP26.55■■□□□ 1.84
CASC4-204ENST00000557945 EXOC6Q8TAG9 804 aa26.55■■□□□ 1.84
CASC4-204ENST00000557945 SRGAP3O43295 1099 aa26.54■■□□□ 1.84
CASC4-204ENST00000557945 IGHMBP2P38935 993 aaKnown RBP26.54■■□□□ 1.84
CASC4-204ENST00000557945 ZNF594Q96JF6 807 aaPredicted RBP26.53■■□□□ 1.84
CASC4-204ENST00000557945 TAF1P21675 1872 aa26.53■■□□□ 1.84
CASC4-204ENST00000557945 C21orf2O43822 256 aa26.52■■□□□ 1.84
CASC4-204ENST00000557945 MTX1Q13505 466 aa26.52■■□□□ 1.84
CASC4-204ENST00000557945 MPHOSPH8Q99549 860 aa26.52■■□□□ 1.84
CASC4-204ENST00000557945 SLX4Q8IY92 1834 aa26.52■■□□□ 1.84
CASC4-204ENST00000557945 BRCA1P38398 1863 aaKnown RBP26.51■■□□□ 1.84
CASC4-204ENST00000557945 CACNA1SQ13698 1873 aa26.51■■□□□ 1.84
CASC4-204ENST00000557945 ATP8B2P98198 1209 aa26.51■■□□□ 1.83
CASC4-204ENST00000557945 GPR162Q16538 588 aa26.51■■□□□ 1.83
CASC4-204ENST00000557945 CEP85Q6P2H3 762 aa26.51■■□□□ 1.83
CASC4-204ENST00000557945 TMX4Q9H1E5 349 aaPredicted RBP26.51■■□□□ 1.83
CASC4-204ENST00000557945 COL4A1P02462 1669 aa26.5■■□□□ 1.83
CASC4-204ENST00000557945 PNMA6EA0A0J9YXQ4 647 aa26.5■■□□□ 1.83
CASC4-204ENST00000557945 TMC4Q7Z404 712 aa26.5■■□□□ 1.83
CASC4-204ENST00000557945 KLHDC4Q8TBB5 520 aa26.5■■□□□ 1.83
CASC4-204ENST00000557945 ATP6V0A2Q9Y487 856 aa26.49■■□□□ 1.83
CASC4-204ENST00000557945 RFX5P48382 616 aaPredicted RBP26.48■■□□□ 1.83
CASC4-204ENST00000557945 OLFM4Q6UX06 510 aa26.48■■□□□ 1.83
CASC4-204ENST00000557945 LDHAL6AQ6ZMR3 332 aa26.48■■□□□ 1.83
CASC4-204ENST00000557945 RPAP2Q8IXW5 612 aaPredicted RBP26.48■■□□□ 1.83
CASC4-204ENST00000557945 NEFLP07196 543 aa26.47■■□□□ 1.83
CASC4-204ENST00000557945 YBX3P16989 372 aaKnown RBP eCLIP26.47■■□□□ 1.83
CASC4-204ENST00000557945 SLC51AQ86UW1 340 aa26.47■■□□□ 1.83
CASC4-204ENST00000557945 SP8Q8IXZ3 490 aa26.47■■□□□ 1.83
CASC4-204ENST00000557945 C7orf43Q8WVR3 580 aa26.47■■□□□ 1.83
CASC4-204ENST00000557945 CNNM1Q9NRU3 951 aa26.47■■□□□ 1.83
CASC4-204ENST00000557945 BSDC1Q9NW68 430 aaPredicted RBP26.47■■□□□ 1.83
CASC4-204ENST00000557945 PA2G4Q9UQ80 394 aaKnown RBP26.46■■□□□ 1.83
CASC4-204ENST00000557945 PTPN12Q05209 780 aaKnown RBP26.46■■□□□ 1.83
CASC4-204ENST00000557945 AAMPQ13685 434 aa26.46■■□□□ 1.83
CASC4-204ENST00000557945 SOGA3Q5TF21 947 aa26.46■■□□□ 1.83
CASC4-204ENST00000557945 SIL1Q9H173 461 aa26.46■■□□□ 1.83
CASC4-204ENST00000557945 POLA2Q14181 598 aa26.45■■□□□ 1.82
CASC4-204ENST00000557945 CCDC93Q567U6 631 aa26.45■■□□□ 1.82
CASC4-204ENST00000557945 SSH3Q8TE77 659 aa26.45■■□□□ 1.82
CASC4-204ENST00000557945 PUS3Q9BZE2 481 aaKnown RBP26.45■■□□□ 1.82
CASC4-204ENST00000557945 DCAF8L1A6NGE4 600 aa26.44■■□□□ 1.82
CASC4-204ENST00000557945 HMMRO75330 724 aa26.44■■□□□ 1.82
CASC4-204ENST00000557945 CC2D2BQ6DHV5 1058 aa26.44■■□□□ 1.82
CASC4-204ENST00000557945 MINPP1Q9UNW1 487 aa26.44■■□□□ 1.82
CASC4-204ENST00000557945 PCDHB15Q9Y5E8 787 aa26.44■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms