RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 ZBTB42B2RXF5 422 aa10.83□□□□□ -0.68
VRK1-203ENST00000555067 FAM196BA6NMK8 535 aa10.82□□□□□ -0.68
VRK1-203ENST00000555067 CPB1P15086 417 aa10.82□□□□□ -0.68
VRK1-203ENST00000555067 PLAURQ03405 335 aa10.82□□□□□ -0.68
VRK1-203ENST00000555067 RTN1Q16799 776 aa10.82□□□□□ -0.68
VRK1-203ENST00000555067 PERM1Q5SV97 790 aa10.82□□□□□ -0.68
VRK1-203ENST00000555067 TRPM4Q8TD43 1214 aa10.82□□□□□ -0.68
VRK1-203ENST00000555067 COL17A1Q9UMD9 1497 aaPredicted RBP10.81□□□□□ -0.68
VRK1-203ENST00000555067 PTK7Q13308 1070 aa10.81□□□□□ -0.68
VRK1-203ENST00000555067 CRTC2Q53ET0 693 aaPredicted RBP10.81□□□□□ -0.68
VRK1-203ENST00000555067 KANK4Q5T7N3 995 aaPredicted RBP10.81□□□□□ -0.68
VRK1-203ENST00000555067 SLC51AQ86UW1 340 aa10.81□□□□□ -0.68
VRK1-203ENST00000555067 USP17L15C9J2P7 530 aa10.8□□□□□ -0.68
VRK1-203ENST00000555067 USP17L10C9JJH3 530 aa10.8□□□□□ -0.68
VRK1-203ENST00000555067 USP17L13C9JLJ4 530 aa10.8□□□□□ -0.68
VRK1-203ENST00000555067 USP17L12C9JPN9 530 aa10.8□□□□□ -0.68
VRK1-203ENST00000555067 USP17L11C9JVI0 530 aa10.8□□□□□ -0.68
VRK1-203ENST00000555067 USP17L21D6R901 530 aa10.8□□□□□ -0.68
VRK1-203ENST00000555067 USP17L18D6R9N7 530 aa10.8□□□□□ -0.68
VRK1-203ENST00000555067 USP17L22D6RA61 530 aa10.8□□□□□ -0.68
VRK1-203ENST00000555067 USP17L17D6RBQ6 530 aa10.8□□□□□ -0.68
VRK1-203ENST00000555067 USP17L19D6RCP7 530 aa10.8□□□□□ -0.68
VRK1-203ENST00000555067 USP17L20D6RJB6 530 aa10.8□□□□□ -0.68
VRK1-203ENST00000555067 DEAF1O75398 565 aaPredicted RBP10.8□□□□□ -0.68
VRK1-203ENST00000555067 USP17L24Q0WX57 530 aa10.8□□□□□ -0.68
VRK1-203ENST00000555067 WFDC8Q8IUA0 241 aa10.8□□□□□ -0.68
VRK1-203ENST00000555067 DZIP1LQ8IYY4 767 aaKnown RBP10.8□□□□□ -0.68
VRK1-203ENST00000555067 SCG3Q8WXD2 468 aaKnown RBP10.8□□□□□ -0.68
VRK1-203ENST00000555067 NGLY1Q96IV0 654 aa10.8□□□□□ -0.68
VRK1-203ENST00000555067 ZFATQ9P243 1243 aa10.8□□□□□ -0.68
VRK1-203ENST00000555067 LMOD1P29536 600 aaPredicted RBP10.79□□□□□ -0.68
VRK1-203ENST00000555067 VRTNQ9H8Y1 702 aa10.79□□□□□ -0.68
VRK1-203ENST00000555067 C11orf16Q9NQ32 467 aa10.79□□□□□ -0.68
VRK1-203ENST00000555067 DLL1O00548 723 aa10.78□□□□□ -0.68
VRK1-203ENST00000555067 INPP5BP32019 993 aa10.78□□□□□ -0.68
VRK1-203ENST00000555067 DPYDQ12882 1025 aa10.78□□□□□ -0.68
VRK1-203ENST00000555067 DHX32Q7L7V1 743 aaKnown RBP10.78□□□□□ -0.68
VRK1-203ENST00000555067 ANKMY2Q8IV38 441 aa10.78□□□□□ -0.68
VRK1-203ENST00000555067 GPLD1P80108 840 aa10.77□□□□□ -0.69
VRK1-203ENST00000555067 HINFPQ9BQA5 517 aa10.77□□□□□ -0.69
VRK1-203ENST00000555067 EPB42P16452 691 aa10.76□□□□□ -0.69
VRK1-203ENST00000555067 IGFBP4P22692 258 aa10.76□□□□□ -0.69
VRK1-203ENST00000555067 ELMSAN1Q6PJG2 1045 aa10.76□□□□□ -0.69
VRK1-203ENST00000555067 CHMP7Q8WUX9 453 aaPredicted RBP10.76□□□□□ -0.69
VRK1-203ENST00000555067 IFT43Q96FT9 208 aa10.76□□□□□ -0.69
VRK1-203ENST00000555067 PCMTD2Q9NV79 361 aa10.76□□□□□ -0.69
VRK1-203ENST00000555067 FSTP19883 344 aa10.75□□□□□ -0.69
VRK1-203ENST00000555067 TMEM130Q8N3G9 435 aa10.75□□□□□ -0.69
VRK1-203ENST00000555067 TARSP26639 723 aaKnown RBP10.74□□□□□ -0.69
VRK1-203ENST00000555067 CD97P48960 835 aa10.74□□□□□ -0.69
VRK1-203ENST00000555067 IDH3AP50213 366 aa10.74□□□□□ -0.69
VRK1-203ENST00000555067 FMNL2Q96PY5 1086 aa10.74□□□□□ -0.69
VRK1-203ENST00000555067 AKTIPQ9H8T0 292 aa10.74□□□□□ -0.69
VRK1-203ENST00000555067 MLLT1Q03111 559 aaPredicted RBP10.72□□□□□ -0.69
VRK1-203ENST00000555067 CFAP70Q5T0N1 1121 aa10.72□□□□□ -0.69
VRK1-203ENST00000555067 KRT25Q7Z3Z0 450 aa10.72□□□□□ -0.69
VRK1-203ENST00000555067 SMG9Q9H0W8 520 aaKnown RBP10.72□□□□□ -0.69
VRK1-203ENST00000555067 ZNF777Q9ULD5 760 aaPredicted RBP10.72□□□□□ -0.69
VRK1-203ENST00000555067 PAX4O43316 350 aa10.71□□□□□ -0.69
VRK1-203ENST00000555067 NRLP54845 237 aa10.71□□□□□ -0.69
VRK1-203ENST00000555067 Q6ZS46 218 aa10.71□□□□□ -0.69
VRK1-203ENST00000555067 ARXQ96QS3 562 aa10.71□□□□□ -0.69
VRK1-203ENST00000555067 MRPL18Q9H0U6 180 aaKnown RBP10.71□□□□□ -0.69
VRK1-203ENST00000555067 F8W735 103 aaPredicted RBP10.7□□□□□ -0.7
VRK1-203ENST00000555067 RARAP10276 462 aa10.7□□□□□ -0.7
VRK1-203ENST00000555067 SSTR4P31391 388 aa10.7□□□□□ -0.7
VRK1-203ENST00000555067 ARSDP51689 593 aa10.7□□□□□ -0.7
VRK1-203ENST00000555067 KLK14Q9P0G3 267 aa10.7□□□□□ -0.7
VRK1-203ENST00000555067 FOXO3O43524 673 aa10.69□□□□□ -0.7
VRK1-203ENST00000555067 SASH3O75995 380 aa10.69□□□□□ -0.7
VRK1-203ENST00000555067 ALX3O95076 343 aa10.69□□□□□ -0.7
VRK1-203ENST00000555067 TXKP42681 527 aa10.68□□□□□ -0.7
VRK1-203ENST00000555067 KIAA1324LA8MWY0 1029 aaPredicted RBP10.67□□□□□ -0.7
VRK1-203ENST00000555067 WEE1P30291 646 aa10.67□□□□□ -0.7
VRK1-203ENST00000555067 FAM200AQ8TCP9 573 aa10.67□□□□□ -0.7
VRK1-203ENST00000555067 SRA1Q9HD15 236 aaKnown RBP10.67□□□□□ -0.7
VRK1-203ENST00000555067 TLR7Q9NYK1 1049 aaKnown RBP10.67□□□□□ -0.7
VRK1-203ENST00000555067 LGR5O75473 907 aa10.66□□□□□ -0.7
VRK1-203ENST00000555067 EGFRP00533 1210 aa10.66□□□□□ -0.7
VRK1-203ENST00000555067 HFE2Q6ZVN8 426 aa10.66□□□□□ -0.7
VRK1-203ENST00000555067 MICAL2O94851 1124 aa10.65□□□□□ -0.7
VRK1-203ENST00000555067 MED26O95402 600 aa10.65□□□□□ -0.7
VRK1-203ENST00000555067 EIF2AK2P19525 551 aaKnown RBP10.65□□□□□ -0.7
VRK1-203ENST00000555067 RFX1P22670 979 aa10.65□□□□□ -0.7
VRK1-203ENST00000555067 ARID4AP29374 1257 aaPredicted RBP10.65□□□□□ -0.7
VRK1-203ENST00000555067 DGKZQ13574 1117 aa10.65□□□□□ -0.7
VRK1-203ENST00000555067 VTI1AQ96AJ9 217 aa10.65□□□□□ -0.7
VRK1-203ENST00000555067 QTRT2Q9H974 415 aaKnown RBP10.65□□□□□ -0.7
VRK1-203ENST00000555067 SETDB1Q15047 1291 aa10.64□□□□□ -0.71
VRK1-203ENST00000555067 PLD4Q96BZ4 506 aa10.64□□□□□ -0.71
VRK1-203ENST00000555067 MYO19Q96H55 970 aa10.64□□□□□ -0.71
VRK1-203ENST00000555067 OPLAHO14841 1288 aa10.63□□□□□ -0.71
VRK1-203ENST00000555067 HOXD8P13378 290 aaPredicted RBP10.63□□□□□ -0.71
VRK1-203ENST00000555067 IRAK1P51617 712 aa10.63□□□□□ -0.71
VRK1-203ENST00000555067 NOVA2Q9UNW9 492 aaKnown RBP10.63□□□□□ -0.71
VRK1-203ENST00000555067 RAXQ9Y2V3 346 aa10.63□□□□□ -0.71
VRK1-203ENST00000555067 GSC2O15499 205 aa10.62□□□□□ -0.71
VRK1-203ENST00000555067 SWI5Q1ZZU3 235 aa10.62□□□□□ -0.71
VRK1-203ENST00000555067 MAP4K3Q8IVH8 894 aa10.62□□□□□ -0.71
VRK1-203ENST00000555067 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.62□□□□□ -0.713e-7■■□□□ 14.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms