RNA–Protein interactions for RNA: ENST00000554901.1

SPTLC2-203, Transcript of serine palmitoyltransferase long chain base subunit 2, humanhuman

TSL 1 (best)

Gene SPTLC2, Length 1,518 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC2-203ENST00000554901 TNRC6CQ9HCJ0 1690 aaKnown RBP20.57■□□□□ 0.88
SPTLC2-203ENST00000554901 NPR1P16066 1061 aa20.57■□□□□ 0.88
SPTLC2-203ENST00000554901 HOXA10P31260 410 aaPredicted RBP20.57■□□□□ 0.88
SPTLC2-203ENST00000554901 LMBR1LQ6UX01 489 aa20.57■□□□□ 0.88
SPTLC2-203ENST00000554901 RPGRQ92834 1020 aaKnown RBP20.57■□□□□ 0.88
SPTLC2-203ENST00000554901 MYH3P11055 1940 aa20.57■□□□□ 0.88
SPTLC2-203ENST00000554901 NEFLP07196 543 aa20.56■□□□□ 0.88
SPTLC2-203ENST00000554901 STYK1Q6J9G0 422 aa20.56■□□□□ 0.88
SPTLC2-203ENST00000554901 C3orf67Q6ZVT6 689 aa20.56■□□□□ 0.88
SPTLC2-203ENST00000554901 C2CD5Q86YS7 1000 aa20.56■□□□□ 0.88
SPTLC2-203ENST00000554901 ANKRD44Q8N8A2 993 aa20.56■□□□□ 0.88
SPTLC2-203ENST00000554901 MASTLQ96GX5 879 aa20.56■□□□□ 0.88
SPTLC2-203ENST00000554901 RBM17Q96I25 401 aaKnown RBP20.55■□□□□ 0.88
SPTLC2-203ENST00000554901 CRAMP1Q96RY5 1269 aa20.55■□□□□ 0.88
SPTLC2-203ENST00000554901 DDX46Q7L014 1031 aaKnown RBP20.54■□□□□ 0.88
SPTLC2-203ENST00000554901 RPAP2Q8IXW5 612 aaPredicted RBP20.54■□□□□ 0.88
SPTLC2-203ENST00000554901 FHDC1Q9C0D6 1143 aaPredicted RBP20.54■□□□□ 0.88
SPTLC2-203ENST00000554901 ALDH1B1P30837 517 aa20.53■□□□□ 0.88
SPTLC2-203ENST00000554901 EXOC6Q8TAG9 804 aa20.53■□□□□ 0.88
SPTLC2-203ENST00000554901 IFIT5Q13325 482 aaKnown RBP20.53■□□□□ 0.88
SPTLC2-203ENST00000554901 CCDC57Q2TAC2 916 aa20.53■□□□□ 0.88
SPTLC2-203ENST00000554901 KLHL34Q8N239 644 aa20.53■□□□□ 0.88
SPTLC2-203ENST00000554901 CNKSR1Q969H4 720 aa20.53■□□□□ 0.88
SPTLC2-203ENST00000554901 CDC5LQ99459 802 aaKnown RBP20.53■□□□□ 0.88
SPTLC2-203ENST00000554901 GREM2Q9H772 168 aa20.53■□□□□ 0.88
SPTLC2-203ENST00000554901 ANKRD18BA2A2Z9 1011 aa20.52■□□□□ 0.87
SPTLC2-203ENST00000554901 DPEP1P16444 411 aa20.52■□□□□ 0.87
SPTLC2-203ENST00000554901 ITGA6P23229 1130 aa20.52■□□□□ 0.87
SPTLC2-203ENST00000554901 ATP8B2P98198 1209 aa20.52■□□□□ 0.87
SPTLC2-203ENST00000554901 FAM161AQ3B820 660 aa20.52■□□□□ 0.87
SPTLC2-203ENST00000554901 CEP85Q6P2H3 762 aa20.52■□□□□ 0.87
SPTLC2-203ENST00000554901 SYT17Q9BSW7 474 aa20.52■□□□□ 0.87
SPTLC2-203ENST00000554901 C1orf115Q9H7X2 142 aa20.52■□□□□ 0.87
SPTLC2-203ENST00000554901 KIAA1551Q9HCM1 1747 aa20.51■□□□□ 0.87
SPTLC2-203ENST00000554901 KCNA3P22001 575 aa20.51■□□□□ 0.87
SPTLC2-203ENST00000554901 CHRNA5P30532 468 aa20.51■□□□□ 0.87
SPTLC2-203ENST00000554901 IRX6P78412 446 aaPredicted RBP20.51■□□□□ 0.87
SPTLC2-203ENST00000554901 TMC4Q7Z404 712 aa20.51■□□□□ 0.87
SPTLC2-203ENST00000554901 CHMP3Q9Y3E7 222 aa20.51■□□□□ 0.87
SPTLC2-203ENST00000554901 COL11A2P13942 1736 aaPredicted RBP20.5■□□□□ 0.87
SPTLC2-203ENST00000554901 DLEC1Q9Y238 1755 aa20.5■□□□□ 0.87
SPTLC2-203ENST00000554901 A0A0G2JLW4 131 aa20.5■□□□□ 0.87
SPTLC2-203ENST00000554901 BBOX1O75936 387 aa20.5■□□□□ 0.87
SPTLC2-203ENST00000554901 GRAPQ13588 217 aa20.5■□□□□ 0.87
SPTLC2-203ENST00000554901 GRAPLQ8TC17 118 aaPredicted RBP20.5■□□□□ 0.87
SPTLC2-203ENST00000554901 PIM2Q9P1W9 311 aa20.5■□□□□ 0.87
SPTLC2-203ENST00000554901 SRGAP3O43295 1099 aa20.49■□□□□ 0.87
SPTLC2-203ENST00000554901 HMMRO75330 724 aa20.49■□□□□ 0.87
SPTLC2-203ENST00000554901 SSH3Q8TE77 659 aa20.49■□□□□ 0.87
SPTLC2-203ENST00000554901 ZNF622Q969S3 477 aaKnown RBP eCLIP20.49■□□□□ 0.872e-7■■■□□ 16
SPTLC2-203ENST00000554901 CCDC85AQ96PX6 553 aaPredicted RBP20.49■□□□□ 0.87
SPTLC2-203ENST00000554901 RPS8P62241 208 aaKnown RBP20.48■□□□□ 0.87
SPTLC2-203ENST00000554901 POLA2Q14181 598 aa20.48■□□□□ 0.87
SPTLC2-203ENST00000554901 ERICH6BQ5W0A0 696 aa20.48■□□□□ 0.87
SPTLC2-203ENST00000554901 TTLL6Q8N841 843 aa20.48■□□□□ 0.87
SPTLC2-203ENST00000554901 SEC31BQ9NQW1 1179 aa20.48■□□□□ 0.87
SPTLC2-203ENST00000554901 FBXO3Q9UK99 471 aa20.48■□□□□ 0.87
SPTLC2-203ENST00000554901 ANKRD18AQ8IVF6 992 aa20.48■□□□□ 0.87
SPTLC2-203ENST00000554901 NLGN2Q8NFZ4 835 aa20.48■□□□□ 0.87
SPTLC2-203ENST00000554901 PNMA6EA0A0J9YXQ4 647 aa20.47■□□□□ 0.87
SPTLC2-203ENST00000554901 IGHMBP2P38935 993 aaKnown RBP20.47■□□□□ 0.87
SPTLC2-203ENST00000554901 RFX5P48382 616 aaPredicted RBP20.47■□□□□ 0.87
SPTLC2-203ENST00000554901 TAF7LQ5H9L4 462 aa20.47■□□□□ 0.87
SPTLC2-203ENST00000554901 COPRSQ9NQ92 184 aa20.47■□□□□ 0.87
SPTLC2-203ENST00000554901 CELF1Q92879 486 aaKnown RBP20.46■□□□□ 0.87
SPTLC2-203ENST00000554901 BSDC1Q9NW68 430 aaPredicted RBP20.46■□□□□ 0.87
SPTLC2-203ENST00000554901 PTPN12Q05209 780 aaKnown RBP20.45■□□□□ 0.86
SPTLC2-203ENST00000554901 DALRD3Q5D0E6 543 aaKnown RBP20.45■□□□□ 0.86
SPTLC2-203ENST00000554901 PRPF40BQ6NWY9 871 aaKnown RBP20.45■□□□□ 0.86
SPTLC2-203ENST00000554901 MPHOSPH8Q99549 860 aa20.45■□□□□ 0.86
SPTLC2-203ENST00000554901 PCDHB15Q9Y5E8 787 aa20.45■□□□□ 0.86
SPTLC2-203ENST00000554901 SRCAPQ6ZRS2 3230 aa20.44■□□□□ 0.86
SPTLC2-203ENST00000554901 SIRT2Q8IXJ6 389 aa20.44■□□□□ 0.86
SPTLC2-203ENST00000554901 PPEF1O14829 653 aaPredicted RBP20.43■□□□□ 0.86
SPTLC2-203ENST00000554901 CIAO1O76071 339 aa20.43■□□□□ 0.86
SPTLC2-203ENST00000554901 CC2D2BQ6DHV5 1058 aa20.43■□□□□ 0.86
SPTLC2-203ENST00000554901 LDHAL6AQ6ZMR3 332 aa20.43■□□□□ 0.86
SPTLC2-203ENST00000554901 BRCA1P38398 1863 aaKnown RBP20.43■□□□□ 0.86
SPTLC2-203ENST00000554901 GRIPAP1Q4V328 841 aa20.43■□□□□ 0.86
SPTLC2-203ENST00000554901 SOGA3Q5TF21 947 aa20.43■□□□□ 0.86
SPTLC2-203ENST00000554901 SP8Q8IXZ3 490 aa20.43■□□□□ 0.86
SPTLC2-203ENST00000554901 TMX4Q9H1E5 349 aaPredicted RBP20.43■□□□□ 0.86
SPTLC2-203ENST00000554901 NOP58Q9Y2X3 529 aaKnown RBP20.43■□□□□ 0.86
SPTLC2-203ENST00000554901 ATP6V0A2Q9Y487 856 aa20.43■□□□□ 0.86
SPTLC2-203ENST00000554901 HDAC1Q13547 482 aaPredicted RBP20.42■□□□□ 0.86
SPTLC2-203ENST00000554901 C7orf43Q8WVR3 580 aa20.42■□□□□ 0.86
SPTLC2-203ENST00000554901 EYA2O00167 538 aa20.41■□□□□ 0.86
SPTLC2-203ENST00000554901 HSP90AB4PQ58FF6 505 aa20.41■□□□□ 0.86
SPTLC2-203ENST00000554901 ZNF594Q96JF6 807 aaPredicted RBP20.41■□□□□ 0.86
SPTLC2-203ENST00000554901 CNNM1Q9NRU3 951 aa20.41■□□□□ 0.86
SPTLC2-203ENST00000554901 RIPOR2Q9Y4F9 1068 aa20.4■□□□□ 0.86
SPTLC2-203ENST00000554901 MROH5Q6ZUA9 1318 aa20.39■□□□□ 0.86
SPTLC2-203ENST00000554901 IL15P40933 162 aaPredicted RBP20.39■□□□□ 0.85
SPTLC2-203ENST00000554901 KLHDC4Q8TBB5 520 aa20.39■□□□□ 0.85
SPTLC2-203ENST00000554901 ANKRD2Q9GZV1 360 aa20.39■□□□□ 0.85
SPTLC2-203ENST00000554901 RWDD1Q9H446 243 aaPredicted RBP20.39■□□□□ 0.85
SPTLC2-203ENST00000554901 SLX4Q8IY92 1834 aa20.39■□□□□ 0.85
SPTLC2-203ENST00000554901 COL4A1P02462 1669 aa20.38■□□□□ 0.85
SPTLC2-203ENST00000554901 SURF6O75683 361 aaKnown RBP20.38■□□□□ 0.85
SPTLC2-203ENST00000554901 G3BP1Q13283 466 aaKnown RBP eCLIP20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms