RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 PWP1Q13610 501 aa8.37□□□□□ -1.07
SCFD1-208ENST00000553278 NBPF6Q5VWK0 638 aa8.37□□□□□ -1.07
SCFD1-208ENST00000553278 EGFLAMQ63HQ2 1017 aa8.37□□□□□ -1.07
SCFD1-208ENST00000553278 ZNF280CQ8ND82 737 aa8.37□□□□□ -1.07
SCFD1-208ENST00000553278 RASGRP4Q8TDF6 673 aa8.37□□□□□ -1.07
SCFD1-208ENST00000553278 SEC16BQ96JE7 1060 aa8.37□□□□□ -1.07
SCFD1-208ENST00000553278 HSH2DQ96JZ2 352 aa8.37□□□□□ -1.07
SCFD1-208ENST00000553278 NBPF4Q96M43 638 aa8.37□□□□□ -1.07
SCFD1-208ENST00000553278 NOC4LQ9BVI4 516 aaKnown RBP8.37□□□□□ -1.07
SCFD1-208ENST00000553278 SSBP05455 408 aaKnown RBP eCLIP8.36□□□□□ -1.07
SCFD1-208ENST00000553278 EPB42P16452 691 aa8.36□□□□□ -1.07
SCFD1-208ENST00000553278 INPP5BP32019 993 aa8.36□□□□□ -1.07
SCFD1-208ENST00000553278 TRIP4Q15650 581 aaPredicted RBP8.36□□□□□ -1.07
SCFD1-208ENST00000553278 GALNT12Q8IXK2 581 aa8.36□□□□□ -1.07
SCFD1-208ENST00000553278 PMEPA1Q969W9 287 aa8.36□□□□□ -1.07
SCFD1-208ENST00000553278 SPON2Q9BUD6 331 aa8.36□□□□□ -1.07
SCFD1-208ENST00000553278 COPRSQ9NQ92 184 aa8.36□□□□□ -1.07
SCFD1-208ENST00000553278 KBTBD4Q9NVX7 518 aa8.36□□□□□ -1.07
SCFD1-208ENST00000553278 TTF2Q9UNY4 1162 aaKnown RBP8.36□□□□□ -1.07
SCFD1-208ENST00000553278 USP20Q9Y2K6 914 aa8.36□□□□□ -1.07
SCFD1-208ENST00000553278 POLR3DP05423 398 aaPredicted RBP8.35□□□□□ -1.07
SCFD1-208ENST00000553278 SLC19A1P41440 591 aa8.35□□□□□ -1.07
SCFD1-208ENST00000553278 WDR4P57081 412 aaKnown RBP8.35□□□□□ -1.07
SCFD1-208ENST00000553278 BTLAQ7Z6A9 289 aa8.35□□□□□ -1.07
SCFD1-208ENST00000553278 KIAA0825Q8IV33 1275 aa8.35□□□□□ -1.07
SCFD1-208ENST00000553278 RSRP1Q9BUV0 290 aa8.35□□□□□ -1.07
SCFD1-208ENST00000553278 SUV39H2Q9H5I1 410 aa8.35□□□□□ -1.07
SCFD1-208ENST00000553278 ZFAND3Q9H8U3 227 aa8.35□□□□□ -1.07
SCFD1-208ENST00000553278 TMEM63CQ9P1W3 806 aa8.35□□□□□ -1.07
SCFD1-208ENST00000553278 KCNMB2Q9Y691 235 aa8.35□□□□□ -1.07
SCFD1-208ENST00000553278 POTECB2RU33 542 aa8.34□□□□□ -1.07
SCFD1-208ENST00000553278 RNF144AP50876 292 aaPredicted RBP8.34□□□□□ -1.07
SCFD1-208ENST00000553278 NFX1Q12986 1120 aaKnown RBP8.34□□□□□ -1.07
SCFD1-208ENST00000553278 RELL1Q8IUW5 271 aa8.34□□□□□ -1.07
SCFD1-208ENST00000553278 NLGN1Q8N2Q7 840 aa8.34□□□□□ -1.07
SCFD1-208ENST00000553278 KLF16Q9BXK1 252 aaPredicted RBP8.34□□□□□ -1.07
SCFD1-208ENST00000553278 TRAK1Q9UPV9 953 aa8.34□□□□□ -1.07
SCFD1-208ENST00000553278 K7ELQ4 463 aaPredicted RBP8.33□□□□□ -1.08
SCFD1-208ENST00000553278 PHKA2P46019 1235 aa8.33□□□□□ -1.08
SCFD1-208ENST00000553278 SPATA31C2B4DYI2 1134 aa8.32□□□□□ -1.08
SCFD1-208ENST00000553278 EREGO14944 169 aa8.32□□□□□ -1.08
SCFD1-208ENST00000553278 GRM2Q14416 872 aa8.32□□□□□ -1.08
SCFD1-208ENST00000553278 JAZF1Q86VZ6 243 aa8.32□□□□□ -1.08
SCFD1-208ENST00000553278 SNIP1Q8TAD8 396 aaKnown RBP8.32□□□□□ -1.08
SCFD1-208ENST00000553278 MKL1Q969V6 931 aa8.32□□□□□ -1.08
SCFD1-208ENST00000553278 EMID1Q96A84 441 aaPredicted RBP8.32□□□□□ -1.08
SCFD1-208ENST00000553278 SPACA7Q96KW9 195 aa8.32□□□□□ -1.08
SCFD1-208ENST00000553278 ABI2Q9NYB9 513 aaPredicted RBP8.32□□□□□ -1.08
SCFD1-208ENST00000553278 XYLBO75191 536 aa8.31□□□□□ -1.08
SCFD1-208ENST00000553278 RLBP1P12271 317 aa8.31□□□□□ -1.08
SCFD1-208ENST00000553278 XRCC5P13010 732 aaKnown RBP8.31□□□□□ -1.08
SCFD1-208ENST00000553278 TIMP2P16035 220 aa8.31□□□□□ -1.08
SCFD1-208ENST00000553278 HSD3B2P26439 372 aa8.31□□□□□ -1.08
SCFD1-208ENST00000553278 TCEAL1Q15170 157 aa8.31□□□□□ -1.08
SCFD1-208ENST00000553278 CCDC85BQ15834 202 aaPredicted RBP8.31□□□□□ -1.08
SCFD1-208ENST00000553278 ARSJQ5FYB0 599 aaPredicted RBP8.31□□□□□ -1.08
SCFD1-208ENST00000553278 C1orf127Q8N9H9 656 aa8.31□□□□□ -1.08
SCFD1-208ENST00000553278 CHRDQ9H2X0 955 aa8.31□□□□□ -1.08
SCFD1-208ENST00000553278 STRIP2Q9ULQ0 834 aa8.31□□□□□ -1.08
SCFD1-208ENST00000553278 CES1P23141 567 aa8.3□□□□□ -1.08
SCFD1-208ENST00000553278 GBP2P32456 591 aaPredicted RBP8.3□□□□□ -1.08
SCFD1-208ENST00000553278 NASPP49321 788 aaPredicted RBP8.3□□□□□ -1.08
SCFD1-208ENST00000553278 SERINC3Q13530 473 aa8.3□□□□□ -1.08
SCFD1-208ENST00000553278 TTC39BQ5VTQ0 682 aaPredicted RBP8.3□□□□□ -1.08
SCFD1-208ENST00000553278 KIAA0319Q5VV43 1072 aa8.3□□□□□ -1.08
SCFD1-208ENST00000553278 LRRC69Q6ZNQ3 347 aa8.3□□□□□ -1.08
SCFD1-208ENST00000553278 MEIOBQ8N635 442 aa8.3□□□□□ -1.08
SCFD1-208ENST00000553278 KLRG1Q96E93 195 aa8.3□□□□□ -1.08
SCFD1-208ENST00000553278 INSM2Q96T92 566 aaPredicted RBP8.3□□□□□ -1.08
SCFD1-208ENST00000553278 TSEN34Q9BSV6 310 aaKnown RBP8.3□□□□□ -1.08
SCFD1-208ENST00000553278 EHD4Q9H223 541 aa8.3□□□□□ -1.08
SCFD1-208ENST00000553278 ZNF408Q9H9D4 720 aa8.3□□□□□ -1.08
SCFD1-208ENST00000553278 POLMQ9NP87 494 aaPredicted RBP8.3□□□□□ -1.08
SCFD1-208ENST00000553278 SIRPGQ9P1W8 387 aa8.3□□□□□ -1.08
SCFD1-208ENST00000553278 ADAMTS1Q9UHI8 967 aa8.3□□□□□ -1.08
SCFD1-208ENST00000553278 PPM1HQ9ULR3 514 aa8.3□□□□□ -1.08
SCFD1-208ENST00000553278 MRPL42Q9Y6G3 142 aaKnown RBP8.3□□□□□ -1.08
SCFD1-208ENST00000553278 U2SURPO15042 1029 aaKnown RBP8.29□□□□□ -1.08
SCFD1-208ENST00000553278 IBSPP21815 317 aaPredicted RBP8.29□□□□□ -1.08
SCFD1-208ENST00000553278 EIF4A3P38919 411 aaKnown RBP8.29□□□□□ -1.08
SCFD1-208ENST00000553278 FOXC1Q12948 553 aa8.29□□□□□ -1.08
SCFD1-208ENST00000553278 COL9A2Q14055 689 aaPredicted RBP8.29□□□□□ -1.08
SCFD1-208ENST00000553278 SPRYD7Q5W111 196 aa8.29□□□□□ -1.08
SCFD1-208ENST00000553278 NLRP13Q86W25 1043 aa8.29□□□□□ -1.08
SCFD1-208ENST00000553278 TMEM74Q96NL1 305 aa8.29□□□□□ -1.08
SCFD1-208ENST00000553278 ZIC5Q96T25 663 aa8.29□□□□□ -1.08
SCFD1-208ENST00000553278 TRIM55Q9BYV6 548 aa8.29□□□□□ -1.08
SCFD1-208ENST00000553278 C11orf16Q9NQ32 467 aa8.29□□□□□ -1.08
SCFD1-208ENST00000553278 CNTN3Q9P232 1028 aa8.29□□□□□ -1.08
SCFD1-208ENST00000553278 EFR3BQ9Y2G0 817 aa8.29□□□□□ -1.08
SCFD1-208ENST00000553278 GJA3Q9Y6H8 435 aa8.29□□□□□ -1.08
SCFD1-208ENST00000553278 MINDY4BA8MYZ0 360 aa8.28□□□□□ -1.08
SCFD1-208ENST00000553278 EGFRP00533 1210 aa8.28□□□□□ -1.08
SCFD1-208ENST00000553278 EDN3P14138 238 aa8.28□□□□□ -1.08
SCFD1-208ENST00000553278 ATP4AP20648 1035 aa8.28□□□□□ -1.08
SCFD1-208ENST00000553278 PTPROQ16827 1216 aa8.28□□□□□ -1.08
SCFD1-208ENST00000553278 WDR44Q5JSH3 913 aa8.28□□□□□ -1.08
SCFD1-208ENST00000553278 RNF187Q5TA31 235 aaPredicted RBP8.28□□□□□ -1.08
SCFD1-208ENST00000553278 ZNF697Q5TEC3 545 aa8.28□□□□□ -1.08
SCFD1-208ENST00000553278 C3orf58Q8NDZ4 430 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 1122.3 ms