RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 C21orf2O43822 256 aa20.46■□□□□ 0.87
CHMP1A-209ENST00000550872 NBPF7P0C2Y1 421 aaPredicted RBP20.46■□□□□ 0.87
CHMP1A-209ENST00000550872 CTSWP56202 376 aa20.46■□□□□ 0.87
CHMP1A-209ENST00000550872 C1QTNF8P60827 252 aa20.46■□□□□ 0.87
CHMP1A-209ENST00000550872 CCDC152Q4G0S7 254 aa20.46■□□□□ 0.87
CHMP1A-209ENST00000550872 INTS3Q68E01 1043 aaKnown RBP20.46■□□□□ 0.87
CHMP1A-209ENST00000550872 USP44Q9H0E7 712 aa20.46■□□□□ 0.87
CHMP1A-209ENST00000550872 LAMB2P55268 1798 aa20.46■□□□□ 0.87
CHMP1A-209ENST00000550872 ARHGAP27Q6ZUM4 889 aa20.45■□□□□ 0.86
CHMP1A-209ENST00000550872 FTSJ3Q8IY81 847 aaKnown RBP20.45■□□□□ 0.86
CHMP1A-209ENST00000550872 DZIP1LQ8IYY4 767 aaKnown RBP20.45■□□□□ 0.86
CHMP1A-209ENST00000550872 TTLL11Q8NHH1 800 aa20.45■□□□□ 0.86
CHMP1A-209ENST00000550872 SLX4Q8IY92 1834 aa20.45■□□□□ 0.86
CHMP1A-209ENST00000550872 UTYO14607 1347 aa20.44■□□□□ 0.86
CHMP1A-209ENST00000550872 CACNA1SQ13698 1873 aa20.43■□□□□ 0.86
CHMP1A-209ENST00000550872 GRAPQ13588 217 aa20.43■□□□□ 0.86
CHMP1A-209ENST00000550872 TMEM57Q8N5G2 664 aa20.43■□□□□ 0.86
CHMP1A-209ENST00000550872 GRAPLQ8TC17 118 aaPredicted RBP20.43■□□□□ 0.86
CHMP1A-209ENST00000550872 SUCLG2Q96I99 432 aa20.43■□□□□ 0.86
CHMP1A-209ENST00000550872 SEC31BQ9NQW1 1179 aa20.43■□□□□ 0.86
CHMP1A-209ENST00000550872 ARFGEF1Q9Y6D6 1849 aa20.43■□□□□ 0.86
CHMP1A-209ENST00000550872 PPEF1O14829 653 aaPredicted RBP20.42■□□□□ 0.86
CHMP1A-209ENST00000550872 PLIN1O60240 522 aa20.42■□□□□ 0.86
CHMP1A-209ENST00000550872 BBOX1O75936 387 aa20.42■□□□□ 0.86
CHMP1A-209ENST00000550872 MS4A1P11836 297 aa20.42■□□□□ 0.86
CHMP1A-209ENST00000550872 FOXO4P98177 505 aa20.42■□□□□ 0.86
CHMP1A-209ENST00000550872 EPHA10Q5JZY3 1008 aa20.42■□□□□ 0.86
CHMP1A-209ENST00000550872 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.42■□□□□ 0.86
CHMP1A-209ENST00000550872 C7orf43Q8WVR3 580 aa20.42■□□□□ 0.86
CHMP1A-209ENST00000550872 CSF1RP07333 972 aa20.41■□□□□ 0.86
CHMP1A-209ENST00000550872 UBTFL1P0CB47 393 aaPredicted RBP20.41■□□□□ 0.86
CHMP1A-209ENST00000550872 SOGA3Q5TF21 947 aa20.41■□□□□ 0.86
CHMP1A-209ENST00000550872 CELF1Q92879 486 aaKnown RBP20.41■□□□□ 0.86
CHMP1A-209ENST00000550872 GREM2Q9H772 168 aa20.41■□□□□ 0.86
CHMP1A-209ENST00000550872 CHMP3Q9Y3E7 222 aa20.41■□□□□ 0.86
CHMP1A-209ENST00000550872 MYH3P11055 1940 aa20.4■□□□□ 0.86
CHMP1A-209ENST00000550872 RLBP1P12271 317 aa20.4■□□□□ 0.86
CHMP1A-209ENST00000550872 RPS8P62241 208 aaKnown RBP20.4■□□□□ 0.86
CHMP1A-209ENST00000550872 LMBR1LQ6UX01 489 aa20.4■□□□□ 0.86
CHMP1A-209ENST00000550872 TMX4Q9H1E5 349 aaPredicted RBP20.4■□□□□ 0.86
CHMP1A-209ENST00000550872 TAF1P21675 1872 aa20.39■□□□□ 0.86
CHMP1A-209ENST00000550872 CCDC93Q567U6 631 aa20.39■□□□□ 0.85
CHMP1A-209ENST00000550872 OLFM4Q6UX06 510 aa20.39■□□□□ 0.85
CHMP1A-209ENST00000550872 ITPRIPQ8IWB1 547 aa20.39■□□□□ 0.85
CHMP1A-209ENST00000550872 PANK1Q8TE04 598 aa20.39■□□□□ 0.85
CHMP1A-209ENST00000550872 KAZALD1Q96I82 304 aa20.39■□□□□ 0.85
CHMP1A-209ENST00000550872 MEIS3Q99687 375 aa20.39■□□□□ 0.85
CHMP1A-209ENST00000550872 HDAC5Q9UQL6 1122 aa20.39■□□□□ 0.85
CHMP1A-209ENST00000550872 GNAI3P08754 354 aa20.38■□□□□ 0.85
CHMP1A-209ENST00000550872 ITGA6P23229 1130 aa20.38■□□□□ 0.85
CHMP1A-209ENST00000550872 FAM161AQ3B820 660 aa20.38■□□□□ 0.85
CHMP1A-209ENST00000550872 CC2D2BQ6DHV5 1058 aa20.38■□□□□ 0.85
CHMP1A-209ENST00000550872 TMC4Q7Z404 712 aa20.38■□□□□ 0.85
CHMP1A-209ENST00000550872 ANKRD18AQ8IVF6 992 aa20.38■□□□□ 0.85
CHMP1A-209ENST00000550872 SP8Q8IXZ3 490 aa20.38■□□□□ 0.85
CHMP1A-209ENST00000550872 CDC5LQ99459 802 aaKnown RBP20.38■□□□□ 0.85
CHMP1A-209ENST00000550872 BICC1Q9H694 974 aaKnown RBP20.38■□□□□ 0.85
CHMP1A-209ENST00000550872 ATP6V0A2Q9Y487 856 aa20.38■□□□□ 0.85
CHMP1A-209ENST00000550872 RTL9Q8NET4 1388 aa20.37■□□□□ 0.85
CHMP1A-209ENST00000550872 ANKRD18BA2A2Z9 1011 aa20.36■□□□□ 0.85
CHMP1A-209ENST00000550872 IFIT5Q13325 482 aaKnown RBP20.36■□□□□ 0.85
CHMP1A-209ENST00000550872 RTKN2Q8IZC4 609 aa20.36■□□□□ 0.85
CHMP1A-209ENST00000550872 NFKBIEO00221 500 aa20.35■□□□□ 0.85
CHMP1A-209ENST00000550872 RASSF7Q02833 373 aa20.35■□□□□ 0.85
CHMP1A-209ENST00000550872 CCDC57Q2TAC2 916 aa20.35■□□□□ 0.85
CHMP1A-209ENST00000550872 SLC51AQ86UW1 340 aa20.35■□□□□ 0.85
CHMP1A-209ENST00000550872 ANKRD44Q8N8A2 993 aa20.35■□□□□ 0.85
CHMP1A-209ENST00000550872 LRRFIP2Q9Y608 721 aaKnown RBP20.35■□□□□ 0.85
CHMP1A-209ENST00000550872 IGHMBP2P38935 993 aaKnown RBP20.34■□□□□ 0.85
CHMP1A-209ENST00000550872 RABL6Q3YEC7 729 aaPredicted RBP20.34■□□□□ 0.85
CHMP1A-209ENST00000550872 GRIPAP1Q4V328 841 aa20.34■□□□□ 0.85
CHMP1A-209ENST00000550872 TAOK3Q9H2K8 898 aa20.34■□□□□ 0.85
CHMP1A-209ENST00000550872 PDE3AQ14432 1141 aa20.33■□□□□ 0.85
CHMP1A-209ENST00000550872 MPNDQ8N594 471 aa20.33■□□□□ 0.85
CHMP1A-209ENST00000550872 COG6Q9Y2V7 657 aa20.33■□□□□ 0.85
CHMP1A-209ENST00000550872 COL4A1P02462 1669 aa20.32■□□□□ 0.84
CHMP1A-209ENST00000550872 FKBP4Q02790 459 aaKnown RBP eCLIP20.32■□□□□ 0.84
CHMP1A-209ENST00000550872 TAF7LQ5H9L4 462 aa20.32■□□□□ 0.84
CHMP1A-209ENST00000550872 MPHOSPH8Q99549 860 aa20.32■□□□□ 0.84
CHMP1A-209ENST00000550872 BSDC1Q9NW68 430 aaPredicted RBP20.32■□□□□ 0.84
CHMP1A-209ENST00000550872 LTBP3Q9NS15 1303 aa20.31■□□□□ 0.84
CHMP1A-209ENST00000550872 FER1L6Q2WGJ9 1857 aa20.31■□□□□ 0.84
CHMP1A-209ENST00000550872 ZBTB7BO15156 539 aaPredicted RBP20.31■□□□□ 0.84
CHMP1A-209ENST00000550872 GNAI2P04899 355 aa20.31■□□□□ 0.84
CHMP1A-209ENST00000550872 RRP1P56182 461 aaKnown RBP20.31■□□□□ 0.84
CHMP1A-209ENST00000550872 MVPQ14764 893 aaKnown RBP20.31■□□□□ 0.84
CHMP1A-209ENST00000550872 C20orf194Q5TEA3 1177 aa20.31■□□□□ 0.84
CHMP1A-209ENST00000550872 ZNF594Q96JF6 807 aaPredicted RBP20.31■□□□□ 0.84
CHMP1A-209ENST00000550872 NSFL1CQ9UNZ2 370 aaKnown RBP20.31■□□□□ 0.84
CHMP1A-209ENST00000550872 LMNB1P20700 586 aa20.3■□□□□ 0.84
CHMP1A-209ENST00000550872 C9orf131Q5VYM1 1079 aa20.3■□□□□ 0.84
CHMP1A-209ENST00000550872 DPP8Q6V1X1 898 aaPredicted RBP20.3■□□□□ 0.84
CHMP1A-209ENST00000550872 PSMD1Q99460 953 aa20.3■□□□□ 0.84
CHMP1A-209ENST00000550872 RNF181Q9P0P0 153 aa20.3■□□□□ 0.84
CHMP1A-209ENST00000550872 PRELPP51888 382 aa20.29■□□□□ 0.84
CHMP1A-209ENST00000550872 GPSM2P81274 684 aa20.29■□□□□ 0.84
CHMP1A-209ENST00000550872 ZNF277Q9NRM2 450 aaPredicted RBP20.29■□□□□ 0.84
CHMP1A-209ENST00000550872 DDX19BQ9UMR2 479 aa20.29■□□□□ 0.84
CHMP1A-209ENST00000550872 CEP350Q5VT06 3117 aa20.29■□□□□ 0.84
CHMP1A-209ENST00000550872 LDHAL6AQ6ZMR3 332 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms