RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 KIAA2012Q0VF49 1180 aa22.27■■□□□ 1.16
VPS29-204ENST00000548259 NOGQ13253 232 aa22.27■■□□□ 1.16
VPS29-204ENST00000548259 DDX46Q7L014 1031 aaKnown RBP22.27■■□□□ 1.16
VPS29-204ENST00000548259 ABCC4O15439 1325 aa22.27■■□□□ 1.16
VPS29-204ENST00000548259 C3orf67Q6ZVT6 689 aa22.26■■□□□ 1.15
VPS29-204ENST00000548259 TMC4Q7Z404 712 aa22.26■■□□□ 1.15
VPS29-204ENST00000548259 TSPYL4Q9UJ04 414 aa22.26■■□□□ 1.15
VPS29-204ENST00000548259 RAD17O75943 681 aa22.25■■□□□ 1.15
VPS29-204ENST00000548259 MCOLN1Q9GZU1 580 aa22.25■■□□□ 1.15
VPS29-204ENST00000548259 NUP98P52948 1817 aa22.24■■□□□ 1.15
VPS29-204ENST00000548259 EIF2S2P20042 333 aaKnown RBP22.24■■□□□ 1.15
VPS29-204ENST00000548259 THUMPD2Q9BTF0 503 aaKnown RBP22.23■■□□□ 1.15
VPS29-204ENST00000548259 CNOT7Q9UIV1 285 aaKnown RBP22.23■■□□□ 1.15
VPS29-204ENST00000548259 TRPM7Q96QT4 1865 aa22.23■■□□□ 1.15
VPS29-204ENST00000548259 DGKZQ13574 1117 aa22.22■■□□□ 1.15
VPS29-204ENST00000548259 GRAPQ13588 217 aa22.22■■□□□ 1.15
VPS29-204ENST00000548259 GRAPLQ8TC17 118 aaPredicted RBP22.22■■□□□ 1.15
VPS29-204ENST00000548259 HUNKP57058 714 aa22.21■■□□□ 1.15
VPS29-204ENST00000548259 SLC51AQ86UW1 340 aa22.21■■□□□ 1.15
VPS29-204ENST00000548259 PLEKHF1Q96S99 279 aa22.21■■□□□ 1.15
VPS29-204ENST00000548259 BABAM1Q9NWV8 329 aa22.21■■□□□ 1.15
VPS29-204ENST00000548259 TRMT112Q9UI30 125 aaKnown RBP22.21■■□□□ 1.15
VPS29-204ENST00000548259 HCLS1P14317 486 aaPredicted RBP22.2■■□□□ 1.14
VPS29-204ENST00000548259 SH3TC1Q8TE82 1336 aa22.2■■□□□ 1.14
VPS29-204ENST00000548259 KDM3BQ7LBC6 1761 aa22.2■■□□□ 1.14
VPS29-204ENST00000548259 HIRAP54198 1017 aaPredicted RBP22.19■■□□□ 1.14
VPS29-204ENST00000548259 NLRP10Q86W26 655 aa22.19■■□□□ 1.14
VPS29-204ENST00000548259 MICALL2Q8IY33 904 aa22.19■■□□□ 1.14
VPS29-204ENST00000548259 TRPM4Q8TD43 1214 aa22.19■■□□□ 1.14
VPS29-204ENST00000548259 DPF2Q92785 391 aa22.19■■□□□ 1.14
VPS29-204ENST00000548259 PCDH10Q9P2E7 1040 aa22.19■■□□□ 1.14
VPS29-204ENST00000548259 PDIA6Q15084 440 aa22.18■■□□□ 1.14
VPS29-204ENST00000548259 USP48Q86UV5 1035 aa22.18■■□□□ 1.14
VPS29-204ENST00000548259 C2orf69Q8N8R5 385 aa22.18■■□□□ 1.14
VPS29-204ENST00000548259 CCDC102AQ96A19 550 aa22.18■■□□□ 1.14
VPS29-204ENST00000548259 LMOD3Q0VAK6 560 aa22.17■■□□□ 1.14
VPS29-204ENST00000548259 AIMP1Q12904 312 aaKnown RBP22.17■■□□□ 1.14
VPS29-204ENST00000548259 TCIRG1Q13488 830 aa22.17■■□□□ 1.14
VPS29-204ENST00000548259 WASHC4Q2M389 1173 aa22.17■■□□□ 1.14
VPS29-204ENST00000548259 COPS6Q7L5N1 327 aa22.17■■□□□ 1.14
VPS29-204ENST00000548259 LRP10Q7Z4F1 713 aa22.17■■□□□ 1.14
VPS29-204ENST00000548259 RPS12P25398 132 aaKnown RBP22.16■■□□□ 1.14
VPS29-204ENST00000548259 RGMBQ6NW40 437 aa22.16■■□□□ 1.14
VPS29-204ENST00000548259 KRT26Q7Z3Y9 468 aa22.16■■□□□ 1.14
VPS29-204ENST00000548259 DCPSQ96C86 337 aaKnown RBP22.16■■□□□ 1.14
VPS29-204ENST00000548259 SAGE1Q9NXZ1 904 aa22.16■■□□□ 1.14
VPS29-204ENST00000548259 XAGE3Q8WTP9 111 aa22.15■■□□□ 1.14
VPS29-204ENST00000548259 RIPK4P57078 832 aa22.14■■□□□ 1.13
VPS29-204ENST00000548259 EYA3Q99504 573 aa22.14■■□□□ 1.13
VPS29-204ENST00000548259 GBA2Q9HCG7 927 aaPredicted RBP22.14■■□□□ 1.13
VPS29-204ENST00000548259 NSFL1CQ9UNZ2 370 aaKnown RBP22.14■■□□□ 1.13
VPS29-204ENST00000548259 YDJCA8MPS7 323 aa22.13■■□□□ 1.13
VPS29-204ENST00000548259 C6orf229H3BNL8 230 aa22.13■■□□□ 1.13
VPS29-204ENST00000548259 ANXA1P04083 346 aa22.13■■□□□ 1.13
VPS29-204ENST00000548259 PROSER3Q2NL68 480 aa22.13■■□□□ 1.13
VPS29-204ENST00000548259 ZBTB12Q9Y330 459 aaPredicted RBP22.13■■□□□ 1.13
VPS29-204ENST00000548259 PSMD14O00487 310 aa22.12■■□□□ 1.13
VPS29-204ENST00000548259 ZNF157P51786 506 aaPredicted RBP22.12■■□□□ 1.13
VPS29-204ENST00000548259 TBC1D10BQ4KMP7 808 aaPredicted RBP22.12■■□□□ 1.13
VPS29-204ENST00000548259 SAMD7Q7Z3H4 446 aa22.12■■□□□ 1.13
VPS29-204ENST00000548259 NECTIN2Q92692 538 aa22.12■■□□□ 1.13
VPS29-204ENST00000548259 SULF1Q8IWU6 871 aa22.11■■□□□ 1.13
VPS29-204ENST00000548259 G3V3G9 751 aa22.1■■□□□ 1.13
VPS29-204ENST00000548259 DCAF8Q5TAQ9 597 aa22.1■■□□□ 1.13
VPS29-204ENST00000548259 REM2Q8IYK8 340 aaPredicted RBP22.1■■□□□ 1.13
VPS29-204ENST00000548259 DBNDD1Q9H9R9 158 aa22.1■■□□□ 1.13
VPS29-204ENST00000548259 SHTN1A0MZ66 631 aa22.09■■□□□ 1.13
VPS29-204ENST00000548259 RIMBP2O15034 1052 aa22.09■■□□□ 1.13
VPS29-204ENST00000548259 HSP90B1P14625 803 aaKnown RBP22.09■■□□□ 1.13
VPS29-204ENST00000548259 RBM26Q5T8P6 1007 aaKnown RBP22.09■■□□□ 1.13
VPS29-204ENST00000548259 DLG5Q8TDM6 1919 aa22.08■■□□□ 1.13
VPS29-204ENST00000548259 KIF23Q02241 960 aaPredicted RBP22.08■■□□□ 1.13
VPS29-204ENST00000548259 SF3B3Q15393 1217 aaKnown RBP22.08■■□□□ 1.13
VPS29-204ENST00000548259 ZIC5Q96T25 663 aa22.08■■□□□ 1.13
VPS29-204ENST00000548259 ZC3H12CQ9C0D7 883 aaKnown RBP22.08■■□□□ 1.13
VPS29-204ENST00000548259 ECE2O60344 883 aa22.07■■□□□ 1.12
VPS29-204ENST00000548259 KIF4BQ2VIQ3 1234 aa22.07■■□□□ 1.12
VPS29-204ENST00000548259 PLBD2Q8NHP8 589 aa22.07■■□□□ 1.12
VPS29-204ENST00000548259 FAM155AB1AL88 458 aaPredicted RBP22.06■■□□□ 1.12
VPS29-204ENST00000548259 TRPA1O75762 1119 aa22.06■■□□□ 1.12
VPS29-204ENST00000548259 ANKRD13DQ6ZTN6 518 aa22.06■■□□□ 1.12
VPS29-204ENST00000548259 CASP8AP2Q9UKL3 1982 aa22.06■■□□□ 1.12
VPS29-204ENST00000548259 ANKRD36CQ5JPF3 1778 aa22.05■■□□□ 1.12
VPS29-204ENST00000548259 ADM5C9JUS6 153 aa22.05■■□□□ 1.12
VPS29-204ENST00000548259 TMPOP42166 694 aaKnown RBP22.05■■□□□ 1.12
VPS29-204ENST00000548259 CELF1Q92879 486 aaKnown RBP22.05■■□□□ 1.12
VPS29-204ENST00000548259 FAM89AQ96GI7 184 aa22.05■■□□□ 1.12
VPS29-204ENST00000548259 RNF186Q9NXI6 227 aa22.05■■□□□ 1.12
VPS29-204ENST00000548259 RPS8P62241 208 aaKnown RBP22.04■■□□□ 1.12
VPS29-204ENST00000548259 GPSM2P81274 684 aa22.04■■□□□ 1.12
VPS29-204ENST00000548259 DOK7Q18PE1 504 aa22.04■■□□□ 1.12
VPS29-204ENST00000548259 HDGFL1Q5TGJ6 251 aa22.04■■□□□ 1.12
VPS29-204ENST00000548259 GGA3Q9NZ52 723 aa22.04■■□□□ 1.12
VPS29-204ENST00000548259 CHPF2Q9P2E5 772 aa22.04■■□□□ 1.12
VPS29-204ENST00000548259 DBF4Q9UBU7 674 aaPredicted RBP22.04■■□□□ 1.12
VPS29-204ENST00000548259 POLLQ9UGP5 575 aa22.04■■□□□ 1.12
VPS29-204ENST00000548259 SLC10A3P09131 477 aa22.03■■□□□ 1.12
VPS29-204ENST00000548259 HOXB7P09629 217 aa22.03■■□□□ 1.12
VPS29-204ENST00000548259 DLK2Q6UY11 383 aa22.03■■□□□ 1.12
VPS29-204ENST00000548259 DUOX1Q9NRD9 1551 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 122.6 ms