RNA–Protein interactions for RNA: ENST00000539941.6

COPS3-212, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2 BASIC

Gene COPS3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-212ENST00000539941 TBC1D32Q96NH3 1257 aa20.66■□□□□ 0.9
COPS3-212ENST00000539941 PDE8AO60658 829 aa20.65■□□□□ 0.9
COPS3-212ENST00000539941 KCNQ4P56696 695 aa20.65■□□□□ 0.9
COPS3-212ENST00000539941 CCDC57Q2TAC2 916 aa20.65■□□□□ 0.9
COPS3-212ENST00000539941 SLC27A3Q5K4L6 730 aa20.65■□□□□ 0.9
COPS3-212ENST00000539941 AACSQ86V21 672 aa20.65■□□□□ 0.9
COPS3-212ENST00000539941 PI4K2BQ8TCG2 481 aa20.65■□□□□ 0.9
COPS3-212ENST00000539941 DDRGK1Q96HY6 314 aa20.65■□□□□ 0.9
COPS3-212ENST00000539941 UTP14AQ9BVJ6 771 aaKnown RBP20.65■□□□□ 0.9
COPS3-212ENST00000539941 RTCBQ9Y3I0 505 aaKnown RBP20.65■□□□□ 0.9
COPS3-212ENST00000539941 SH3TC1Q8TE82 1336 aa20.65■□□□□ 0.9
COPS3-212ENST00000539941 GLRX3O76003 335 aaKnown RBP20.64■□□□□ 0.9
COPS3-212ENST00000539941 IL15P40933 162 aaPredicted RBP20.64■□□□□ 0.9
COPS3-212ENST00000539941 ECHDC1Q9NTX5 307 aa20.64■□□□□ 0.9
COPS3-212ENST00000539941 NARFQ9UHQ1 456 aa20.64■□□□□ 0.9
COPS3-212ENST00000539941 EYA2O00167 538 aa20.64■□□□□ 0.89
COPS3-212ENST00000539941 GNPATO15228 680 aa20.64■□□□□ 0.89
COPS3-212ENST00000539941 MFAP1P55081 439 aaKnown RBP20.64■□□□□ 0.89
COPS3-212ENST00000539941 CTSWP56202 376 aa20.64■□□□□ 0.89
COPS3-212ENST00000539941 TSHZ3Q63HK5 1081 aa20.64■□□□□ 0.89
COPS3-212ENST00000539941 GPR108Q9NPR9 543 aa20.64■□□□□ 0.89
COPS3-212ENST00000539941 NIP7Q9Y221 180 aaKnown RBP eCLIP20.64■□□□□ 0.89
COPS3-212ENST00000539941 SUSD4Q5VX71 490 aa20.63■□□□□ 0.89
COPS3-212ENST00000539941 EAF2Q96CJ1 260 aaPredicted RBP20.63■□□□□ 0.89
COPS3-212ENST00000539941 LAMB2P55268 1798 aa20.62■□□□□ 0.89
COPS3-212ENST00000539941 IFIT5Q13325 482 aaKnown RBP20.62■□□□□ 0.89
COPS3-212ENST00000539941 ATG9AQ7Z3C6 839 aa20.62■□□□□ 0.89
COPS3-212ENST00000539941 TTLL11Q8NHH1 800 aa20.62■□□□□ 0.89
COPS3-212ENST00000539941 TNNI3KQ59H18 835 aa20.61■□□□□ 0.89
COPS3-212ENST00000539941 FPGT-TNNI3KV9GXZ4 949 aa20.61■□□□□ 0.89
COPS3-212ENST00000539941 NTSR2O95665 410 aa20.61■□□□□ 0.89
COPS3-212ENST00000539941 ADRA2BP18089 450 aa20.61■□□□□ 0.89
COPS3-212ENST00000539941 TFCP2Q12800 502 aa20.61■□□□□ 0.89
COPS3-212ENST00000539941 SYNE4Q8N205 404 aa20.61■□□□□ 0.89
COPS3-212ENST00000539941 C22orf23Q9BZE7 217 aa20.61■□□□□ 0.89
COPS3-212ENST00000539941 TRIM6-TRIM34B2RNG4 842 aa20.6■□□□□ 0.89
COPS3-212ENST00000539941 ZPR1O75312 459 aa20.59■□□□□ 0.89
COPS3-212ENST00000539941 CNTROBQ8N137 903 aa20.59■□□□□ 0.89
COPS3-212ENST00000539941 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.59■□□□□ 0.89
COPS3-212ENST00000539941 AK9Q5TCS8 1911 aa20.59■□□□□ 0.89
COPS3-212ENST00000539941 ANKRD18BA2A2Z9 1011 aa20.58■□□□□ 0.89
COPS3-212ENST00000539941 TXNRD1Q16881 649 aa20.58■□□□□ 0.89
COPS3-212ENST00000539941 TAF7LQ5H9L4 462 aa20.58■□□□□ 0.89
COPS3-212ENST00000539941 CCDC8Q9H0W5 538 aaPredicted RBP20.58■□□□□ 0.89
COPS3-212ENST00000539941 LRRC4BQ9NT99 713 aa20.58■□□□□ 0.89
COPS3-212ENST00000539941 DDX60Q8IY21 1712 aaKnown RBP20.58■□□□□ 0.89
COPS3-212ENST00000539941 C4AP0C0L4 1744 aa20.58■□□□□ 0.88
COPS3-212ENST00000539941 ITGA6P23229 1130 aa20.58■□□□□ 0.88
COPS3-212ENST00000539941 RBM25P49756 843 aaKnown RBP20.58■□□□□ 0.88
COPS3-212ENST00000539941 RTL9Q8NET4 1388 aa20.58■□□□□ 0.88
COPS3-212ENST00000539941 IL27Q8NEV9 243 aa20.58■□□□□ 0.88
COPS3-212ENST00000539941 ZNF594Q96JF6 807 aaPredicted RBP20.58■□□□□ 0.88
COPS3-212ENST00000539941 BCL2L12Q9HB09 334 aa20.58■□□□□ 0.88
COPS3-212ENST00000539941 COL24A1Q17RW2 1714 aa20.57■□□□□ 0.88
COPS3-212ENST00000539941 TRAPPC3LQ5T215 181 aa20.57■□□□□ 0.88
COPS3-212ENST00000539941 ARHGEF1Q92888 912 aaKnown RBP20.57■□□□□ 0.88
COPS3-212ENST00000539941 RILPL2Q969X0 211 aa20.57■□□□□ 0.88
COPS3-212ENST00000539941 GREM2Q9H772 168 aa20.57■□□□□ 0.88
COPS3-212ENST00000539941 LRRC24Q50LG9 513 aa20.56■□□□□ 0.88
COPS3-212ENST00000539941 USPL1Q5W0Q7 1092 aa20.56■□□□□ 0.88
COPS3-212ENST00000539941 UBR3Q6ZT12 1888 aa20.56■□□□□ 0.88
COPS3-212ENST00000539941 RGPD3A6NKT7 1758 aaPredicted RBP20.56■□□□□ 0.88
COPS3-212ENST00000539941 RGPD4Q7Z3J3 1758 aa20.56■□□□□ 0.88
COPS3-212ENST00000539941 LRP5O75197 1615 aa20.56■□□□□ 0.88
COPS3-212ENST00000539941 REC8O95072 547 aa20.55■□□□□ 0.88
COPS3-212ENST00000539941 CHMLP26374 656 aa20.55■□□□□ 0.88
COPS3-212ENST00000539941 NYXQ9GZU5 481 aa20.55■□□□□ 0.88
COPS3-212ENST00000539941 CEP126Q9P2H0 1117 aa20.55■□□□□ 0.88
COPS3-212ENST00000539941 DBNLQ9UJU6 430 aaKnown RBP20.55■□□□□ 0.88
COPS3-212ENST00000539941 ZNF609O15014 1411 aa20.55■□□□□ 0.88
COPS3-212ENST00000539941 RFC4P35249 363 aa20.54■□□□□ 0.88
COPS3-212ENST00000539941 CCDC152Q4G0S7 254 aa20.54■□□□□ 0.88
COPS3-212ENST00000539941 TLR7Q9NYK1 1049 aaKnown RBP20.54■□□□□ 0.88
COPS3-212ENST00000539941 AKAP2Q9Y2D5 859 aa20.54■□□□□ 0.88
COPS3-212ENST00000539941 HCLS1P14317 486 aaPredicted RBP20.54■□□□□ 0.88
COPS3-212ENST00000539941 ATP5JP18859 108 aa20.54■□□□□ 0.88
COPS3-212ENST00000539941 TBC1D9BQ66K14 1250 aa20.54■□□□□ 0.88
COPS3-212ENST00000539941 EVI5LQ96CN4 794 aa20.54■□□□□ 0.88
COPS3-212ENST00000539941 CCDC85AQ96PX6 553 aaPredicted RBP20.54■□□□□ 0.88
COPS3-212ENST00000539941 SETDB2Q96T68 719 aa20.54■□□□□ 0.88
COPS3-212ENST00000539941 PUS3Q9BZE2 481 aaKnown RBP20.54■□□□□ 0.88
COPS3-212ENST00000539941 SRP68Q9UHB9 627 aaKnown RBP20.54■□□□□ 0.88
COPS3-212ENST00000539941 FAM177BA6PVY3 158 aa20.53■□□□□ 0.88
COPS3-212ENST00000539941 SSFA2P28290 1259 aa20.53■□□□□ 0.88
COPS3-212ENST00000539941 SLC10A5Q5PT55 438 aa20.52■□□□□ 0.88
COPS3-212ENST00000539941 LDHAL6AQ6ZMR3 332 aa20.52■□□□□ 0.88
COPS3-212ENST00000539941 ESYT1Q9BSJ8 1104 aa20.52■□□□□ 0.88
COPS3-212ENST00000539941 RIPOR2Q9Y4F9 1068 aa20.52■□□□□ 0.88
COPS3-212ENST00000539941 AMIGO3Q86WK7 504 aa20.51■□□□□ 0.87
COPS3-212ENST00000539941 RIC1Q4ADV7 1423 aa20.51■□□□□ 0.87
COPS3-212ENST00000539941 EPB41L2O43491 1005 aaKnown RBP20.51■□□□□ 0.87
COPS3-212ENST00000539941 DBNDD2Q9BQY9 259 aa20.51■□□□□ 0.87
COPS3-212ENST00000539941 PDGFDQ9GZP0 370 aaPredicted RBP20.51■□□□□ 0.87
COPS3-212ENST00000539941 CNNM1Q9NRU3 951 aa20.51■□□□□ 0.87
COPS3-212ENST00000539941 SF3B3Q15393 1217 aaKnown RBP20.5■□□□□ 0.87
COPS3-212ENST00000539941 SMIM5Q71RC9 77 aa20.5■□□□□ 0.87
COPS3-212ENST00000539941 USP26Q9BXU7 913 aa20.5■□□□□ 0.87
COPS3-212ENST00000539941 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.49■□□□□ 0.87
COPS3-212ENST00000539941 A0A1B0GUL7 405 aa20.49■□□□□ 0.87
COPS3-212ENST00000539941 HIP1O00291 1037 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms