RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 CDHR2Q9BYE9 1310 aa13.65□□□□□ -0.22
HMGA2-209ENST00000539662 LTBP3Q9NS15 1303 aa13.65□□□□□ -0.22
HMGA2-209ENST00000539662 LRRC37AA6NMS7 1700 aa13.65□□□□□ -0.22
HMGA2-209ENST00000539662 SPEF2Q9C093 1822 aa13.65□□□□□ -0.22
HMGA2-209ENST00000539662 FKBP4Q02790 459 aaKnown RBP eCLIP13.65□□□□□ -0.22
HMGA2-209ENST00000539662 GRAPQ13588 217 aa13.65□□□□□ -0.22
HMGA2-209ENST00000539662 SLC4A10Q6U841 1118 aa13.65□□□□□ -0.22
HMGA2-209ENST00000539662 DDX46Q7L014 1031 aaKnown RBP13.65□□□□□ -0.22
HMGA2-209ENST00000539662 GRAPLQ8TC17 118 aaPredicted RBP13.65□□□□□ -0.22
HMGA2-209ENST00000539662 NMRK2Q9NPI5 230 aa13.65□□□□□ -0.22
HMGA2-209ENST00000539662 ATP6V0A2Q9Y487 856 aa13.65□□□□□ -0.22
HMGA2-209ENST00000539662 DUOX1Q9NRD9 1551 aa13.64□□□□□ -0.23
HMGA2-209ENST00000539662 PDE8AO60658 829 aa13.64□□□□□ -0.23
HMGA2-209ENST00000539662 EPHA10Q5JZY3 1008 aa13.64□□□□□ -0.23
HMGA2-209ENST00000539662 SMC4Q9NTJ3 1288 aa13.64□□□□□ -0.23
HMGA2-209ENST00000539662 BBOX1O75936 387 aa13.63□□□□□ -0.23
HMGA2-209ENST00000539662 RARSP54136 660 aaKnown RBP13.63□□□□□ -0.23
HMGA2-209ENST00000539662 CTSWP56202 376 aa13.63□□□□□ -0.23
HMGA2-209ENST00000539662 ALDH1L2Q3SY69 923 aa13.63□□□□□ -0.23
HMGA2-209ENST00000539662 SOGA3Q5TF21 947 aa13.63□□□□□ -0.23
HMGA2-209ENST00000539662 SP8Q8IXZ3 490 aa13.63□□□□□ -0.23
HMGA2-209ENST00000539662 RTKN2Q8IZC4 609 aa13.63□□□□□ -0.23
HMGA2-209ENST00000539662 TTLL11Q8NHH1 800 aa13.63□□□□□ -0.23
HMGA2-209ENST00000539662 GREM2Q9H772 168 aa13.63□□□□□ -0.23
HMGA2-209ENST00000539662 GPBP1L1Q9HC44 474 aaPredicted RBP13.63□□□□□ -0.23
HMGA2-209ENST00000539662 TNNQ9UQP3 1299 aa13.63□□□□□ -0.23
HMGA2-209ENST00000539662 LTBP1Q14766 1721 aa13.62□□□□□ -0.23
HMGA2-209ENST00000539662 WTIPA6NIX2 430 aaPredicted RBP13.62□□□□□ -0.23
HMGA2-209ENST00000539662 KIF3CO14782 793 aa13.62□□□□□ -0.23
HMGA2-209ENST00000539662 BCAR3O75815 825 aa13.62□□□□□ -0.23
HMGA2-209ENST00000539662 PSMD1Q99460 953 aa13.62□□□□□ -0.23
HMGA2-209ENST00000539662 NOB1Q9ULX3 412 aaKnown RBP13.62□□□□□ -0.23
HMGA2-209ENST00000539662 ZBED9Q6R2W3 1325 aa13.62□□□□□ -0.23
HMGA2-209ENST00000539662 NBPF7P0C2Y1 421 aaPredicted RBP13.61□□□□□ -0.23
HMGA2-209ENST00000539662 IARSP41252 1262 aaKnown RBP13.61□□□□□ -0.23
HMGA2-209ENST00000539662 RPS8P62241 208 aaKnown RBP13.61□□□□□ -0.23
HMGA2-209ENST00000539662 GPSM2P81274 684 aa13.61□□□□□ -0.23
HMGA2-209ENST00000539662 FOXO4P98177 505 aa13.61□□□□□ -0.23
HMGA2-209ENST00000539662 KAZALD1Q96I82 304 aa13.61□□□□□ -0.23
HMGA2-209ENST00000539662 GPR101Q96P66 508 aaPredicted RBP13.61□□□□□ -0.23
HMGA2-209ENST00000539662 PTPRCP08575 1304 aa13.61□□□□□ -0.23
HMGA2-209ENST00000539662 ZNF541Q9H0D2 1346 aa13.61□□□□□ -0.23
HMGA2-209ENST00000539662 POTECB2RU33 542 aa13.6□□□□□ -0.23
HMGA2-209ENST00000539662 AOC3Q16853 763 aa13.6□□□□□ -0.23
HMGA2-209ENST00000539662 FAM161AQ3B820 660 aa13.6□□□□□ -0.23
HMGA2-209ENST00000539662 CCDC152Q4G0S7 254 aa13.6□□□□□ -0.23
HMGA2-209ENST00000539662 CC2D2BQ6DHV5 1058 aa13.6□□□□□ -0.23
HMGA2-209ENST00000539662 PLA2G12BQ9BX93 195 aa13.6□□□□□ -0.23
HMGA2-209ENST00000539662 SRCIN1Q9C0H9 1055 aa13.6□□□□□ -0.23
HMGA2-209ENST00000539662 RRAGCQ9HB90 399 aa13.6□□□□□ -0.23
HMGA2-209ENST00000539662 GLTPD2A6NH11 291 aa13.59□□□□□ -0.23
HMGA2-209ENST00000539662 GRM8O00222 908 aa13.59□□□□□ -0.23
HMGA2-209ENST00000539662 DDNO94850 711 aaPredicted RBP13.59□□□□□ -0.23
HMGA2-209ENST00000539662 CSF1RP07333 972 aa13.59□□□□□ -0.23
HMGA2-209ENST00000539662 CT47B1P0C2W7 299 aaPredicted RBP13.59□□□□□ -0.23
HMGA2-209ENST00000539662 DPP8Q6V1X1 898 aaPredicted RBP13.59□□□□□ -0.23
HMGA2-209ENST00000539662 MPNDQ8N594 471 aa13.59□□□□□ -0.23
HMGA2-209ENST00000539662 SUCLG2Q96I99 432 aa13.59□□□□□ -0.23
HMGA2-209ENST00000539662 RTFDC1Q9BY42 306 aaPredicted RBP13.59□□□□□ -0.23
HMGA2-209ENST00000539662 POLLQ9UGP5 575 aa13.59□□□□□ -0.23
HMGA2-209ENST00000539662 NSFL1CQ9UNZ2 370 aaKnown RBP13.59□□□□□ -0.23
HMGA2-209ENST00000539662 ALDH1L1O75891 902 aa13.58□□□□□ -0.24
HMGA2-209ENST00000539662 WDR90Q96KV7 1748 aa13.57□□□□□ -0.24
HMGA2-209ENST00000539662 FZD9O00144 591 aa13.57□□□□□ -0.24
HMGA2-209ENST00000539662 PPIP5K2O43314 1243 aa13.57□□□□□ -0.24
HMGA2-209ENST00000539662 ITGA6P23229 1130 aa13.57□□□□□ -0.24
HMGA2-209ENST00000539662 BRPF1P55201 1214 aaPredicted RBP13.57□□□□□ -0.24
HMGA2-209ENST00000539662 ZNF594Q96JF6 807 aaPredicted RBP13.57□□□□□ -0.24
HMGA2-209ENST00000539662 USP44Q9H0E7 712 aa13.57□□□□□ -0.24
HMGA2-209ENST00000539662 C9orf78Q9NZ63 289 aaPredicted RBP13.57□□□□□ -0.24
HMGA2-209ENST00000539662 ZC3H4Q9UPT8 1303 aaKnown RBP13.57□□□□□ -0.24
HMGA2-209ENST00000539662 RTL9Q8NET4 1388 aa13.57□□□□□ -0.24
HMGA2-209ENST00000539662 RIMBP2O15034 1052 aa13.56□□□□□ -0.24
HMGA2-209ENST00000539662 LMBR1LQ6UX01 489 aa13.56□□□□□ -0.24
HMGA2-209ENST00000539662 ANKRD18AQ8IVF6 992 aa13.56□□□□□ -0.24
HMGA2-209ENST00000539662 LARGE2Q8N3Y3 721 aa13.56□□□□□ -0.24
HMGA2-209ENST00000539662 UTYO14607 1347 aa13.56□□□□□ -0.24
HMGA2-209ENST00000539662 KDM2BQ8NHM5 1336 aa13.56□□□□□ -0.24
HMGA2-209ENST00000539662 A0A1B0GUL6 1792 aa13.55□□□□□ -0.24
HMGA2-209ENST00000539662 YDJCA8MPS7 323 aa13.55□□□□□ -0.24
HMGA2-209ENST00000539662 HSP90B1P14625 803 aaKnown RBP13.55□□□□□ -0.24
HMGA2-209ENST00000539662 C1QTNF8P60827 252 aa13.55□□□□□ -0.24
HMGA2-209ENST00000539662 TMC4Q7Z404 712 aa13.55□□□□□ -0.24
HMGA2-209ENST00000539662 ANKRD44Q8N8A2 993 aa13.55□□□□□ -0.24
HMGA2-209ENST00000539662 TBC1D16Q8TBP0 767 aa13.55□□□□□ -0.24
HMGA2-209ENST00000539662 MINPP1Q9UNW1 487 aa13.55□□□□□ -0.24
HMGA2-209ENST00000539662 C6orf229H3BNL8 230 aa13.54□□□□□ -0.24
HMGA2-209ENST00000539662 SNAP23O00161 211 aa13.54□□□□□ -0.24
HMGA2-209ENST00000539662 KIAA2012Q0VF49 1180 aa13.54□□□□□ -0.24
HMGA2-209ENST00000539662 DOK7Q18PE1 504 aa13.54□□□□□ -0.24
HMGA2-209ENST00000539662 GRIPAP1Q4V328 841 aa13.54□□□□□ -0.24
HMGA2-209ENST00000539662 FRAT1Q92837 279 aaPredicted RBP13.54□□□□□ -0.24
HMGA2-209ENST00000539662 TMX4Q9H1E5 349 aaPredicted RBP13.54□□□□□ -0.24
HMGA2-209ENST00000539662 BICC1Q9H694 974 aaKnown RBP13.54□□□□□ -0.24
HMGA2-209ENST00000539662 KCNQ5Q9NR82 932 aa13.54□□□□□ -0.24
HMGA2-209ENST00000539662 CHMP3Q9Y3E7 222 aa13.54□□□□□ -0.24
HMGA2-209ENST00000539662 SCN9AQ15858 1988 aa13.53□□□□□ -0.24
HMGA2-209ENST00000539662 POTEIP0CG38 1075 aa13.53□□□□□ -0.24
HMGA2-209ENST00000539662 POTEJP0CG39 1038 aa13.53□□□□□ -0.24
HMGA2-209ENST00000539662 TRIM27P14373 513 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms