RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 DBF4Q9UBU7 674 aaPredicted RBP11.01□□□□□ -0.65
USP28-203ENST00000537490 CXCL9Q07325 125 aa11□□□□□ -0.65
USP28-203ENST00000537490 DPP8Q6V1X1 898 aaPredicted RBP11□□□□□ -0.65
USP28-203ENST00000537490 TNS4Q8IZW8 715 aa11□□□□□ -0.65
USP28-203ENST00000537490 SUPT20HQ8NEM7 779 aa11□□□□□ -0.65
USP28-203ENST00000537490 CNKSR2Q8WXI2 1034 aa11□□□□□ -0.65
USP28-203ENST00000537490 FAM89AQ96GI7 184 aa11□□□□□ -0.65
USP28-203ENST00000537490 HYPKQ9NX55 129 aa11□□□□□ -0.65
USP28-203ENST00000537490 ZNRF3Q9ULT6 936 aa11□□□□□ -0.65
USP28-203ENST00000537490 ADAMTSL1Q8N6G6 1762 aa11□□□□□ -0.65
USP28-203ENST00000537490 LTBP1Q14766 1721 aa10.99□□□□□ -0.65
USP28-203ENST00000537490 ELL2O00472 640 aaPredicted RBP10.99□□□□□ -0.65
USP28-203ENST00000537490 KIAA2012Q0VF49 1180 aa10.99□□□□□ -0.65
USP28-203ENST00000537490 SF3B3Q15393 1217 aaKnown RBP10.99□□□□□ -0.65
USP28-203ENST00000537490 RTL5Q5HYW3 569 aaPredicted RBP10.99□□□□□ -0.65
USP28-203ENST00000537490 PHAXQ9H814 394 aaKnown RBP10.99□□□□□ -0.65
USP28-203ENST00000537490 RASSF10A6NK89 507 aa10.98□□□□□ -0.65
USP28-203ENST00000537490 FOXN1O15353 648 aa10.98□□□□□ -0.65
USP28-203ENST00000537490 TRIM28Q13263 835 aaKnown RBP10.98□□□□□ -0.65
USP28-203ENST00000537490 DEFB115Q30KQ5 88 aa10.98□□□□□ -0.65
USP28-203ENST00000537490 CIAPIN1Q6FI81 312 aa10.98□□□□□ -0.65
USP28-203ENST00000537490 USP50Q70EL3 339 aaPredicted RBP10.98□□□□□ -0.65
USP28-203ENST00000537490 CELF1Q92879 486 aaKnown RBP10.98□□□□□ -0.65
USP28-203ENST00000537490 IFT57Q9NWB7 429 aa10.98□□□□□ -0.65
USP28-203ENST00000537490 GPRC5DQ9NZD1 345 aa10.98□□□□□ -0.65
USP28-203ENST00000537490 YDJCA8MPS7 323 aa10.97□□□□□ -0.65
USP28-203ENST00000537490 TRAF5O00463 557 aa10.97□□□□□ -0.65
USP28-203ENST00000537490 IRS4O14654 1257 aaPredicted RBP10.97□□□□□ -0.65
USP28-203ENST00000537490 CAPN15O75808 1086 aa10.97□□□□□ -0.65
USP28-203ENST00000537490 RAD17O75943 681 aa10.97□□□□□ -0.65
USP28-203ENST00000537490 GMPSP49915 693 aaPredicted RBP10.97□□□□□ -0.65
USP28-203ENST00000537490 GNAI1P63096 354 aa10.97□□□□□ -0.65
USP28-203ENST00000537490 CCDC184Q52MB2 194 aa10.97□□□□□ -0.65
USP28-203ENST00000537490 RIC3Q7Z5B4 369 aa10.97□□□□□ -0.65
USP28-203ENST00000537490 C8orf58Q8NAV2 365 aa10.97□□□□□ -0.65
USP28-203ENST00000537490 ADARB2Q9NS39 739 aaKnown RBP10.97□□□□□ -0.65
USP28-203ENST00000537490 CST9Q5W186 159 aa10.96□□□□□ -0.65
USP28-203ENST00000537490 TMC4Q7Z404 712 aa10.96□□□□□ -0.65
USP28-203ENST00000537490 ABT1Q9ULW3 272 aaKnown RBP10.96□□□□□ -0.65
USP28-203ENST00000537490 NSFL1CQ9UNZ2 370 aaKnown RBP10.96□□□□□ -0.65
USP28-203ENST00000537490 WDR33Q9C0J8 1336 aaKnown RBP10.95□□□□□ -0.66
USP28-203ENST00000537490 SHTN1A0MZ66 631 aa10.95□□□□□ -0.66
USP28-203ENST00000537490 RIMBP2O15034 1052 aa10.95□□□□□ -0.66
USP28-203ENST00000537490 HIRAP54198 1017 aaPredicted RBP10.95□□□□□ -0.66
USP28-203ENST00000537490 GPSM2P81274 684 aa10.95□□□□□ -0.66
USP28-203ENST00000537490 CALD1Q05682 793 aaKnown RBP10.95□□□□□ -0.66
USP28-203ENST00000537490 GOLGA2Q08379 1002 aa10.95□□□□□ -0.66
USP28-203ENST00000537490 TNIP1Q15025 636 aa10.95□□□□□ -0.66
USP28-203ENST00000537490 WASHC4Q2M389 1173 aa10.95□□□□□ -0.66
USP28-203ENST00000537490 TSPYL6Q8N831 410 aa10.95□□□□□ -0.66
USP28-203ENST00000537490 ZBTB38Q8NAP3 1195 aaPredicted RBP10.95□□□□□ -0.66
USP28-203ENST00000537490 JARID2Q92833 1246 aaPredicted RBP10.95□□□□□ -0.66
USP28-203ENST00000537490 MYD88Q99836 296 aa10.95□□□□□ -0.66
USP28-203ENST00000537490 BCL2L13Q9BXK5 485 aa10.95□□□□□ -0.66
USP28-203ENST00000537490 WBP1LQ9NX94 342 aa10.95□□□□□ -0.66
USP28-203ENST00000537490 POLLQ9UGP5 575 aa10.95□□□□□ -0.66
USP28-203ENST00000537490 LAMB2P55268 1798 aa10.95□□□□□ -0.66
USP28-203ENST00000537490 ANKRD36CQ5JPF3 1778 aa10.95□□□□□ -0.66
USP28-203ENST00000537490 C6orf229H3BNL8 230 aa10.94□□□□□ -0.66
USP28-203ENST00000537490 RPS8P62241 208 aaKnown RBP10.94□□□□□ -0.66
USP28-203ENST00000537490 TRPM4Q8TD43 1214 aa10.94□□□□□ -0.66
USP28-203ENST00000537490 AIDAQ96BJ3 306 aa10.94□□□□□ -0.66
USP28-203ENST00000537490 GPR101Q96P66 508 aaPredicted RBP10.94□□□□□ -0.66
USP28-203ENST00000537490 GLIS2Q9BZE0 524 aaPredicted RBP10.94□□□□□ -0.66
USP28-203ENST00000537490 DBNDD1Q9H9R9 158 aa10.94□□□□□ -0.66
USP28-203ENST00000537490 SEC31BQ9NQW1 1179 aa10.94□□□□□ -0.66
USP28-203ENST00000537490 PGAP2Q9UHJ9 254 aa10.94□□□□□ -0.66
USP28-203ENST00000537490 CNOT7Q9UIV1 285 aaKnown RBP10.94□□□□□ -0.66
USP28-203ENST00000537490 ZBTB12Q9Y330 459 aaPredicted RBP10.94□□□□□ -0.66
USP28-203ENST00000537490 COL4A1P02462 1669 aa10.94□□□□□ -0.66
USP28-203ENST00000537490 DUOX1Q9NRD9 1551 aa10.94□□□□□ -0.66
USP28-203ENST00000537490 TAF1P21675 1872 aa10.93□□□□□ -0.66
USP28-203ENST00000537490 KCNA4P22459 653 aa10.93□□□□□ -0.66
USP28-203ENST00000537490 CTCFP49711 727 aaPredicted RBP10.93□□□□□ -0.66
USP28-203ENST00000537490 DOK7Q18PE1 504 aa10.93□□□□□ -0.66
USP28-203ENST00000537490 CCDC191Q8NCU4 936 aa10.93□□□□□ -0.66
USP28-203ENST00000537490 METTL22Q9BUU2 404 aaPredicted RBP10.93□□□□□ -0.66
USP28-203ENST00000537490 PRDM10Q9NQV6 1147 aa10.93□□□□□ -0.66
USP28-203ENST00000537490 KCNQ5Q9NR82 932 aa10.93□□□□□ -0.66
USP28-203ENST00000537490 CDHR2Q9BYE9 1310 aa10.92□□□□□ -0.66
USP28-203ENST00000537490 H7C1D1 291 aa10.92□□□□□ -0.66
USP28-203ENST00000537490 PSMD14O00487 310 aa10.92□□□□□ -0.66
USP28-203ENST00000537490 PCCAP05165 728 aaPredicted RBP10.92□□□□□ -0.66
USP28-203ENST00000537490 LBX1P52954 281 aa10.92□□□□□ -0.66
USP28-203ENST00000537490 CCDC30Q5VVM6 783 aa10.92□□□□□ -0.66
USP28-203ENST00000537490 CYP4F22Q6NT55 531 aa10.92□□□□□ -0.66
USP28-203ENST00000537490 PAXIP1Q6ZW49 1069 aaPredicted RBP10.92□□□□□ -0.66
USP28-203ENST00000537490 MICALL2Q8IY33 904 aa10.92□□□□□ -0.66
USP28-203ENST00000537490 TBC1D16Q8TBP0 767 aa10.92□□□□□ -0.66
USP28-203ENST00000537490 ZC3H15Q8WU90 426 aaKnown RBP10.92□□□□□ -0.66
USP28-203ENST00000537490 TSR2Q969E8 191 aaKnown RBP10.92□□□□□ -0.66
USP28-203ENST00000537490 CAPNS2Q96L46 248 aa10.92□□□□□ -0.66
USP28-203ENST00000537490 CCDC85AQ96PX6 553 aaPredicted RBP10.92□□□□□ -0.66
USP28-203ENST00000537490 TLL2Q9Y6L7 1015 aa10.92□□□□□ -0.66
USP28-203ENST00000537490 DDX60Q8IY21 1712 aaKnown RBP10.92□□□□□ -0.66
USP28-203ENST00000537490 ECE2O60344 883 aa10.91□□□□□ -0.66
USP28-203ENST00000537490 PDE8AO60658 829 aa10.91□□□□□ -0.66
USP28-203ENST00000537490 CELF2O95319 508 aaKnown RBP10.91□□□□□ -0.66
USP28-203ENST00000537490 DDX58O95786 925 aaKnown RBP10.91□□□□□ -0.66
USP28-203ENST00000537490 HSPA8P11142 646 aaKnown RBP10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms