RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 SEPT3Q9UH03 358 aa8.73□□□□□ -1.01
USP28-202ENST00000535607 GJA3Q9Y6H8 435 aa8.73□□□□□ -1.01
USP28-202ENST00000535607 USP3Q9Y6I4 520 aa8.73□□□□□ -1.01
USP28-202ENST00000535607 FRMPD1Q5SYB0 1578 aa8.73□□□□□ -1.01
USP28-202ENST00000535607 ANKRD30AQ9BXX3 1397 aa8.73□□□□□ -1.01
USP28-202ENST00000535607 MAGI2Q86UL8 1455 aa8.72□□□□□ -1.01
USP28-202ENST00000535607 EML1O00423 815 aa8.72□□□□□ -1.01
USP28-202ENST00000535607 SCNN1AP37088 669 aa8.72□□□□□ -1.01
USP28-202ENST00000535607 HIRAP54198 1017 aaPredicted RBP8.72□□□□□ -1.01
USP28-202ENST00000535607 FKBP4Q02790 459 aaKnown RBP eCLIP8.72□□□□□ -1.01
USP28-202ENST00000535607 ZNF211Q13398 564 aaPredicted RBP8.72□□□□□ -1.01
USP28-202ENST00000535607 RTN1Q16799 776 aa8.72□□□□□ -1.01
USP28-202ENST00000535607 NBPF10Q6P3W6 841 aaKnown RBP8.72□□□□□ -1.01
USP28-202ENST00000535607 ALDH16A1Q8IZ83 802 aa8.72□□□□□ -1.01
USP28-202ENST00000535607 HELQQ8TDG4 1101 aa8.72□□□□□ -1.01
USP28-202ENST00000535607 KIFC2Q96AC6 838 aa8.72□□□□□ -1.01
USP28-202ENST00000535607 IPO9Q96P70 1041 aaKnown RBP8.72□□□□□ -1.01
USP28-202ENST00000535607 PHACTR1Q9C0D0 580 aa8.72□□□□□ -1.01
USP28-202ENST00000535607 ATP13A2Q9NQ11 1180 aa8.72□□□□□ -1.01
USP28-202ENST00000535607 ANO2Q9NQ90 1003 aa8.72□□□□□ -1.01
USP28-202ENST00000535607 ZNF644Q9H582 1327 aaPredicted RBP8.72□□□□□ -1.01
USP28-202ENST00000535607 TSPOAP1O95153 1857 aa8.72□□□□□ -1.01
USP28-202ENST00000535607 EIF2AK4Q9P2K8 1649 aaKnown RBP8.72□□□□□ -1.01
USP28-202ENST00000535607 PTPRKQ15262 1439 aa8.71□□□□□ -1.01
USP28-202ENST00000535607 NCOA1Q15788 1441 aa8.71□□□□□ -1.01
USP28-202ENST00000535607 TRAPPC8Q9Y2L5 1435 aa8.71□□□□□ -1.01
USP28-202ENST00000535607 DUOX2Q9NRD8 1548 aa8.71□□□□□ -1.01
USP28-202ENST00000535607 SOWAHDA6NJG2 315 aa8.71□□□□□ -1.02
USP28-202ENST00000535607 FAM13AO94988 1023 aa8.71□□□□□ -1.02
USP28-202ENST00000535607 ARSJQ5FYB0 599 aaPredicted RBP8.71□□□□□ -1.02
USP28-202ENST00000535607 TRIM46Q7Z4K8 759 aa8.71□□□□□ -1.02
USP28-202ENST00000535607 PGBD3Q8N328 593 aa8.71□□□□□ -1.02
USP28-202ENST00000535607 ABTB2Q8N961 1025 aa8.71□□□□□ -1.02
USP28-202ENST00000535607 ZDHHC3Q9NYG2 299 aa8.71□□□□□ -1.02
USP28-202ENST00000535607 SOS2Q07890 1332 aaPredicted RBP8.71□□□□□ -1.02
USP28-202ENST00000535607 ZBED9Q6R2W3 1325 aa8.71□□□□□ -1.02
USP28-202ENST00000535607 NAIPQ13075 1403 aa8.71□□□□□ -1.02
USP28-202ENST00000535607 ERBINQ96RT1 1412 aa8.71□□□□□ -1.02
USP28-202ENST00000535607 ARHGEF40Q8TER5 1519 aa8.7□□□□□ -1.02
USP28-202ENST00000535607 REREQ9P2R6 1566 aa8.7□□□□□ -1.02
USP28-202ENST00000535607 A0A1B0GTH6 734 aa8.7□□□□□ -1.02
USP28-202ENST00000535607 PPM1GO15355 546 aaPredicted RBP8.7□□□□□ -1.02
USP28-202ENST00000535607 ST8SIA5O15466 376 aa8.7□□□□□ -1.02
USP28-202ENST00000535607 TSPY4P0CV99 314 aa8.7□□□□□ -1.02
USP28-202ENST00000535607 TSPY10P0CW01 314 aa8.7□□□□□ -1.02
USP28-202ENST00000535607 RHOQP17081 205 aa8.7□□□□□ -1.02
USP28-202ENST00000535607 BRD2P25440 801 aaKnown RBP8.7□□□□□ -1.02
USP28-202ENST00000535607 C1orf53Q5VUE5 145 aa8.7□□□□□ -1.02
USP28-202ENST00000535607 Q6ZNB5 142 aa8.7□□□□□ -1.02
USP28-202ENST00000535607 ZDHHC1Q8WTX9 485 aa8.7□□□□□ -1.02
USP28-202ENST00000535607 AAASQ9NRG9 546 aa8.7□□□□□ -1.02
USP28-202ENST00000535607 BCORL1Q5H9F3 1711 aa8.7□□□□□ -1.02
USP28-202ENST00000535607 KIDINS220Q9ULH0 1771 aa8.7□□□□□ -1.02
USP28-202ENST00000535607 ICMTO60725 284 aa8.69□□□□□ -1.02
USP28-202ENST00000535607 ALKBH2Q6NS38 261 aa8.69□□□□□ -1.02
USP28-202ENST00000535607 SIN3AQ96ST3 1273 aa8.69□□□□□ -1.02
USP28-202ENST00000535607 ANKIB1Q9P2G1 1089 aa8.69□□□□□ -1.02
USP28-202ENST00000535607 KIF15Q9NS87 1388 aa8.69□□□□□ -1.02
USP28-202ENST00000535607 DGKZQ13574 1117 aa8.68□□□□□ -1.02
USP28-202ENST00000535607 C11orf91Q3C1V1 193 aa8.68□□□□□ -1.02
USP28-202ENST00000535607 CAPN12Q6ZSI9 719 aa8.68□□□□□ -1.02
USP28-202ENST00000535607 TTC16Q8NEE8 873 aa8.68□□□□□ -1.02
USP28-202ENST00000535607 MYO19Q96H55 970 aa8.68□□□□□ -1.02
USP28-202ENST00000535607 GAS2L1Q99501 681 aaPredicted RBP8.68□□□□□ -1.02
USP28-202ENST00000535607 STIM2Q9P246 746 aa8.68□□□□□ -1.02
USP28-202ENST00000535607 GPC6Q9Y625 555 aaPredicted RBP8.68□□□□□ -1.02
USP28-202ENST00000535607 DNMT3AQ9Y6K1 912 aaPredicted RBP8.68□□□□□ -1.02
USP28-202ENST00000535607 SPAG9O60271 1321 aaKnown RBP8.68□□□□□ -1.02
USP28-202ENST00000535607 CNTLNQ9NXG0 1405 aa8.68□□□□□ -1.02
USP28-202ENST00000535607 DIP2CQ9Y2E4 1556 aa8.68□□□□□ -1.02
USP28-202ENST00000535607 KDM6BO15054 1643 aa8.68□□□□□ -1.02
USP28-202ENST00000535607 ABCA6Q8N139 1617 aa8.68□□□□□ -1.02
USP28-202ENST00000535607 UNC13BO14795 1591 aa8.67□□□□□ -1.02
USP28-202ENST00000535607 DEPDC5O75140 1603 aa8.67□□□□□ -1.02
USP28-202ENST00000535607 TXLNAP40222 546 aa8.67□□□□□ -1.02
USP28-202ENST00000535607 HNRNPMP52272 730 aaKnown RBP eCLIP8.67□□□□□ -1.02
USP28-202ENST00000535607 MFAP1P55081 439 aaKnown RBP8.67□□□□□ -1.02
USP28-202ENST00000535607 COX20Q5RI15 118 aa8.67□□□□□ -1.02
USP28-202ENST00000535607 SH3PXD2AQ5TCZ1 1133 aa8.67□□□□□ -1.02
USP28-202ENST00000535607 KDM5DQ9BY66 1539 aa8.67□□□□□ -1.02
USP28-202ENST00000535607 QTRT2Q9H974 415 aaKnown RBP8.67□□□□□ -1.02
USP28-202ENST00000535607 FAM13BQ9NYF5 915 aa8.67□□□□□ -1.02
USP28-202ENST00000535607 FAM135AQ9P2D6 1515 aa8.67□□□□□ -1.02
USP28-202ENST00000535607 ANKRD50Q9ULJ7 1429 aa8.67□□□□□ -1.02
USP28-202ENST00000535607 RNF17Q9BXT8 1623 aaKnown RBP8.66□□□□□ -1.02
USP28-202ENST00000535607 NDUFB5O43674 189 aa8.66□□□□□ -1.02
USP28-202ENST00000535607 PCSK2P16519 638 aa8.66□□□□□ -1.02
USP28-202ENST00000535607 MTMR3Q13615 1198 aa8.66□□□□□ -1.02
USP28-202ENST00000535607 CCDC136Q96JN2 1154 aa8.66□□□□□ -1.02
USP28-202ENST00000535607 GPAMQ9HCL2 828 aa8.66□□□□□ -1.02
USP28-202ENST00000535607 PRDM15P57071 1507 aaPredicted RBP8.65□□□□□ -1.02
USP28-202ENST00000535607 SMG6Q86US8 1419 aaKnown RBP8.65□□□□□ -1.02
USP28-202ENST00000535607 NOM1Q5C9Z4 860 aaKnown RBP8.65□□□□□ -1.02
USP28-202ENST00000535607 EFHC2Q5JST6 749 aa8.65□□□□□ -1.02
USP28-202ENST00000535607 POTEAQ6S8J7 498 aa8.65□□□□□ -1.02
USP28-202ENST00000535607 RIPOR1Q6ZS17 1223 aa8.65□□□□□ -1.02
USP28-202ENST00000535607 SAP130Q9H0E3 1048 aa8.65□□□□□ -1.02
USP28-202ENST00000535607 DNMT3LQ9UJW3 386 aa8.65□□□□□ -1.02
USP28-202ENST00000535607 BRPF3Q9ULD4 1205 aa8.65□□□□□ -1.02
USP28-202ENST00000535607 DYRK1BQ9Y463 629 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms