RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 USP50Q70EL3 339 aaPredicted RBP14.78□□□□□ -0.04
VPS28-214ENST00000531032 MPNDQ8N594 471 aa14.78□□□□□ -0.04
VPS28-214ENST00000531032 ISCA1Q9BUE6 129 aa14.78□□□□□ -0.04
VPS28-214ENST00000531032 MBIPQ9NS73 344 aa14.78□□□□□ -0.04
VPS28-214ENST00000531032 ZNRF3Q9ULT6 936 aa14.78□□□□□ -0.04
VPS28-214ENST00000531032 ZNF853P0CG23 659 aa14.77□□□□□ -0.05
VPS28-214ENST00000531032 CXCL9Q07325 125 aa14.77□□□□□ -0.05
VPS28-214ENST00000531032 KIAA2012Q0VF49 1180 aa14.77□□□□□ -0.05
VPS28-214ENST00000531032 DUSP27Q5VZP5 1158 aa14.77□□□□□ -0.05
VPS28-214ENST00000531032 TMC4Q7Z404 712 aa14.77□□□□□ -0.05
VPS28-214ENST00000531032 HYPKQ9NX55 129 aa14.77□□□□□ -0.05
VPS28-214ENST00000531032 GPRC5DQ9NZD1 345 aa14.77□□□□□ -0.05
VPS28-214ENST00000531032 ADARB2Q9NS39 739 aaKnown RBP14.76□□□□□ -0.05
VPS28-214ENST00000531032 CDHR2Q9BYE9 1310 aa14.75□□□□□ -0.05
VPS28-214ENST00000531032 FOXN1O15353 648 aa14.75□□□□□ -0.05
VPS28-214ENST00000531032 TRIM28Q13263 835 aaKnown RBP14.75□□□□□ -0.05
VPS28-214ENST00000531032 SF3B3Q15393 1217 aaKnown RBP14.75□□□□□ -0.05
VPS28-214ENST00000531032 DEFB115Q30KQ5 88 aa14.75□□□□□ -0.05
VPS28-214ENST00000531032 FAM89AQ96GI7 184 aa14.75□□□□□ -0.05
VPS28-214ENST00000531032 IFT57Q9NWB7 429 aa14.75□□□□□ -0.05
VPS28-214ENST00000531032 TRPM7Q96QT4 1865 aa14.75□□□□□ -0.05
VPS28-214ENST00000531032 COL4A1P02462 1669 aa14.74□□□□□ -0.05
VPS28-214ENST00000531032 THSD7BQ9C0I4 1608 aa14.74□□□□□ -0.05
VPS28-214ENST00000531032 ATP5J2-PTCD1G3V325 749 aa14.74□□□□□ -0.05
VPS28-214ENST00000531032 CIAPIN1Q6FI81 312 aa14.74□□□□□ -0.05
VPS28-214ENST00000531032 ZNF428Q96B54 188 aa14.74□□□□□ -0.05
VPS28-214ENST00000531032 WBP1LQ9NX94 342 aa14.74□□□□□ -0.05
VPS28-214ENST00000531032 ABT1Q9ULW3 272 aaKnown RBP14.74□□□□□ -0.05
VPS28-214ENST00000531032 APAF1O14727 1248 aa14.73□□□□□ -0.05
VPS28-214ENST00000531032 GMPSP49915 693 aaPredicted RBP14.73□□□□□ -0.05
VPS28-214ENST00000531032 CALD1Q05682 793 aaKnown RBP14.73□□□□□ -0.05
VPS28-214ENST00000531032 FMR1Q06787 632 aaKnown RBP eCLIP14.73□□□□□ -0.05
VPS28-214ENST00000531032 PRDM10Q9NQV6 1147 aa14.73□□□□□ -0.05
VPS28-214ENST00000531032 YDJCA8MPS7 323 aa14.72□□□□□ -0.05
VPS28-214ENST00000531032 RAD17O75943 681 aa14.72□□□□□ -0.05
VPS28-214ENST00000531032 CTCFP49711 727 aaPredicted RBP14.72□□□□□ -0.05
VPS28-214ENST00000531032 GNAI1P63096 354 aa14.72□□□□□ -0.05
VPS28-214ENST00000531032 TNIP1Q15025 636 aa14.72□□□□□ -0.05
VPS28-214ENST00000531032 CELF1Q92879 486 aaKnown RBP14.72□□□□□ -0.05
VPS28-214ENST00000531032 AIDAQ96BJ3 306 aa14.72□□□□□ -0.05
VPS28-214ENST00000531032 WDR33Q9C0J8 1336 aaKnown RBP14.71□□□□□ -0.05
VPS28-214ENST00000531032 TRAF5O00463 557 aa14.71□□□□□ -0.05
VPS28-214ENST00000531032 IRS4O14654 1257 aaPredicted RBP14.71□□□□□ -0.05
VPS28-214ENST00000531032 CAPN15O75808 1086 aa14.71□□□□□ -0.05
VPS28-214ENST00000531032 GOLGA2Q08379 1002 aa14.71□□□□□ -0.05
VPS28-214ENST00000531032 CST9Q5W186 159 aa14.71□□□□□ -0.05
VPS28-214ENST00000531032 PHAXQ9H814 394 aaKnown RBP14.71□□□□□ -0.05
VPS28-214ENST00000531032 PGAP2Q9UHJ9 254 aa14.71□□□□□ -0.05
VPS28-214ENST00000531032 WASHC4Q2M389 1173 aa14.7□□□□□ -0.06
VPS28-214ENST00000531032 RTL5Q5HYW3 569 aaPredicted RBP14.7□□□□□ -0.06
VPS28-214ENST00000531032 RIC3Q7Z5B4 369 aa14.7□□□□□ -0.06
VPS28-214ENST00000531032 ZBTB38Q8NAP3 1195 aaPredicted RBP14.7□□□□□ -0.06
VPS28-214ENST00000531032 ZC3H15Q8WU90 426 aaKnown RBP14.7□□□□□ -0.06
VPS28-214ENST00000531032 BCL2L13Q9BXK5 485 aa14.7□□□□□ -0.06
VPS28-214ENST00000531032 NSFL1CQ9UNZ2 370 aaKnown RBP14.7□□□□□ -0.06
VPS28-214ENST00000531032 ELL2O00472 640 aaPredicted RBP14.69□□□□□ -0.06
VPS28-214ENST00000531032 HIRAP54198 1017 aaPredicted RBP14.69□□□□□ -0.06
VPS28-214ENST00000531032 GPSM2P81274 684 aa14.69□□□□□ -0.06
VPS28-214ENST00000531032 MAP2K1Q02750 393 aaPredicted RBP14.69□□□□□ -0.06
VPS28-214ENST00000531032 POLLQ9UGP5 575 aa14.69□□□□□ -0.06
VPS28-214ENST00000531032 TLL2Q9Y6L7 1015 aa14.69□□□□□ -0.06
VPS28-214ENST00000531032 HSP90B1P14625 803 aaKnown RBP14.68□□□□□ -0.06
VPS28-214ENST00000531032 ECE1P42892 770 aa14.68□□□□□ -0.06
VPS28-214ENST00000531032 RPS8P62241 208 aaKnown RBP14.68□□□□□ -0.06
VPS28-214ENST00000531032 C8orf58Q8NAV2 365 aa14.68□□□□□ -0.06
VPS28-214ENST00000531032 TRPM4Q8TD43 1214 aa14.68□□□□□ -0.06
VPS28-214ENST00000531032 CAPNS2Q96L46 248 aa14.68□□□□□ -0.06
VPS28-214ENST00000531032 CNOT7Q9UIV1 285 aaKnown RBP14.68□□□□□ -0.06
VPS28-214ENST00000531032 SHTN1A0MZ66 631 aa14.67□□□□□ -0.06
VPS28-214ENST00000531032 PSMD14O00487 310 aa14.67□□□□□ -0.06
VPS28-214ENST00000531032 PCCAP05165 728 aaPredicted RBP14.67□□□□□ -0.06
VPS28-214ENST00000531032 LBX1P52954 281 aa14.67□□□□□ -0.06
VPS28-214ENST00000531032 MICALL2Q8IY33 904 aa14.67□□□□□ -0.06
VPS28-214ENST00000531032 CCDC191Q8NCU4 936 aa14.67□□□□□ -0.06
VPS28-214ENST00000531032 DPF2Q92785 391 aa14.67□□□□□ -0.06
VPS28-214ENST00000531032 MYD88Q99836 296 aa14.67□□□□□ -0.06
VPS28-214ENST00000531032 CHMP4AQ9BY43 222 aa14.67□□□□□ -0.06
VPS28-214ENST00000531032 GLIS2Q9BZE0 524 aaPredicted RBP14.67□□□□□ -0.06
VPS28-214ENST00000531032 DBNDD1Q9H9R9 158 aa14.67□□□□□ -0.06
VPS28-214ENST00000531032 C6orf229H3BNL8 230 aa14.66□□□□□ -0.06
VPS28-214ENST00000531032 H7C1D1 291 aa14.66□□□□□ -0.06
VPS28-214ENST00000531032 CELF2O95319 508 aaKnown RBP14.66□□□□□ -0.06
VPS28-214ENST00000531032 HSPA8P11142 646 aaKnown RBP14.66□□□□□ -0.06
VPS28-214ENST00000531032 CCDC30Q5VVM6 783 aa14.66□□□□□ -0.06
VPS28-214ENST00000531032 CYP4F22Q6NT55 531 aa14.66□□□□□ -0.06
VPS28-214ENST00000531032 SAPCD2Q86UD0 394 aa14.66□□□□□ -0.06
VPS28-214ENST00000531032 TBC1D16Q8TBP0 767 aa14.66□□□□□ -0.06
VPS28-214ENST00000531032 EYA3Q99504 573 aa14.66□□□□□ -0.06
VPS28-214ENST00000531032 METTL22Q9BUU2 404 aaPredicted RBP14.66□□□□□ -0.06
VPS28-214ENST00000531032 PODXL2Q9NZ53 605 aa14.66□□□□□ -0.06
VPS28-214ENST00000531032 ZBTB12Q9Y330 459 aaPredicted RBP14.66□□□□□ -0.06
VPS28-214ENST00000531032 RTL9Q8NET4 1388 aa14.65□□□□□ -0.06
VPS28-214ENST00000531032 RIMBP2O15034 1052 aa14.65□□□□□ -0.06
VPS28-214ENST00000531032 ECE2O60344 883 aa14.65□□□□□ -0.06
VPS28-214ENST00000531032 PDE8AO60658 829 aa14.65□□□□□ -0.06
VPS28-214ENST00000531032 DDX58O95786 925 aaKnown RBP14.65□□□□□ -0.06
VPS28-214ENST00000531032 RPS12P25398 132 aaKnown RBP14.65□□□□□ -0.06
VPS28-214ENST00000531032 CCDC152Q4G0S7 254 aa14.65□□□□□ -0.06
VPS28-214ENST00000531032 PAXIP1Q6ZW49 1069 aaPredicted RBP14.65□□□□□ -0.06
VPS28-214ENST00000531032 CDC37L1Q7L3B6 337 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms