RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 FSTL1Q12841 308 aa26.38■■□□□ 1.81
VPS28-206ENST00000526734 CDHR2Q9BYE9 1310 aa26.37■■□□□ 1.81
VPS28-206ENST00000526734 RTFDC1Q9BY42 306 aaPredicted RBP26.36■■□□□ 1.81
VPS28-206ENST00000526734 CACNA1FO60840 1977 aa26.36■■□□□ 1.81
VPS28-206ENST00000526734 FZD9O00144 591 aa26.35■■□□□ 1.81
VPS28-206ENST00000526734 PDE8AO60658 829 aa26.35■■□□□ 1.81
VPS28-206ENST00000526734 FKBP5Q13451 457 aaPredicted RBP26.35■■□□□ 1.81
VPS28-206ENST00000526734 RTL5Q5HYW3 569 aaPredicted RBP26.35■■□□□ 1.81
VPS28-206ENST00000526734 G2E3Q7L622 706 aa26.35■■□□□ 1.81
VPS28-206ENST00000526734 L3MBTL3Q96JM7 780 aaPredicted RBP26.35■■□□□ 1.81
VPS28-206ENST00000526734 IQCA1LA6NCM1 817 aa26.34■■□□□ 1.81
VPS28-206ENST00000526734 E9PSI1 815 aa26.34■■□□□ 1.81
VPS28-206ENST00000526734 IGKV5-2P06315 115 aa26.34■■□□□ 1.81
VPS28-206ENST00000526734 DPP8Q6V1X1 898 aaPredicted RBP26.34■■□□□ 1.81
VPS28-206ENST00000526734 SMC1BQ8NDV3 1235 aa26.34■■□□□ 1.81
VPS28-206ENST00000526734 ZNF428Q96B54 188 aa26.34■■□□□ 1.81
VPS28-206ENST00000526734 DDNO94850 711 aaPredicted RBP26.33■■□□□ 1.81
VPS28-206ENST00000526734 CCDC152Q4G0S7 254 aa26.33■■□□□ 1.81
VPS28-206ENST00000526734 LARGE2Q8N3Y3 721 aa26.33■■□□□ 1.81
VPS28-206ENST00000526734 MPNDQ8N594 471 aa26.33■■□□□ 1.81
VPS28-206ENST00000526734 DNAAF4Q8WXU2 420 aa26.33■■□□□ 1.81
VPS28-206ENST00000526734 NEURL1BA8MQ27 555 aa26.32■■□□□ 1.8
VPS28-206ENST00000526734 LRRC37AA6NMS7 1700 aa26.31■■□□□ 1.8
VPS28-206ENST00000526734 EIF6P56537 245 aaKnown RBP26.31■■□□□ 1.8
VPS28-206ENST00000526734 LINS1Q8NG48 757 aa26.31■■□□□ 1.8
VPS28-206ENST00000526734 ZNF541Q9H0D2 1346 aa26.31■■□□□ 1.8
VPS28-206ENST00000526734 POTECB2RU33 542 aa26.3■■□□□ 1.8
VPS28-206ENST00000526734 PPIP5K2O43314 1243 aa26.3■■□□□ 1.8
VPS28-206ENST00000526734 NIM1KQ8IY84 436 aa26.3■■□□□ 1.8
VPS28-206ENST00000526734 GPC2Q8N158 579 aa26.3■■□□□ 1.8
VPS28-206ENST00000526734 CELF1Q92879 486 aaKnown RBP26.3■■□□□ 1.8
VPS28-206ENST00000526734 RPS8P62241 208 aaKnown RBP26.29■■□□□ 1.8
VPS28-206ENST00000526734 APLP1P51693 650 aa26.28■■□□□ 1.8
VPS28-206ENST00000526734 CWF19L2Q2TBE0 894 aaKnown RBP26.28■■□□□ 1.8
VPS28-206ENST00000526734 CTSWP56202 376 aa26.27■■□□□ 1.8
VPS28-206ENST00000526734 KIAA2012Q0VF49 1180 aa26.27■■□□□ 1.8
VPS28-206ENST00000526734 GCKRQ14397 625 aa26.27■■□□□ 1.8
VPS28-206ENST00000526734 H7C1W4 665 aa26.26■■□□□ 1.79
VPS28-206ENST00000526734 AOC3Q16853 763 aa26.26■■□□□ 1.79
VPS28-206ENST00000526734 SLC51AQ86UW1 340 aa26.26■■□□□ 1.79
VPS28-206ENST00000526734 SCN4AP35499 1836 aa26.25■■□□□ 1.79
VPS28-206ENST00000526734 COL4A5P29400 1685 aa26.25■■□□□ 1.79
VPS28-206ENST00000526734 RTL9Q8NET4 1388 aa26.25■■□□□ 1.79
VPS28-206ENST00000526734 SLFN5Q08AF3 891 aa26.25■■□□□ 1.79
VPS28-206ENST00000526734 UBE3BQ7Z3V4 1068 aa26.24■■□□□ 1.79
VPS28-206ENST00000526734 CDC5LQ99459 802 aaKnown RBP26.24■■□□□ 1.79
VPS28-206ENST00000526734 PLA2G12BQ9BX93 195 aa26.24■■□□□ 1.79
VPS28-206ENST00000526734 HACL1Q9UJ83 578 aa26.24■■□□□ 1.79
VPS28-206ENST00000526734 ZNRF3Q9ULT6 936 aa26.24■■□□□ 1.79
VPS28-206ENST00000526734 ANKRD18AQ8IVF6 992 aa26.23■■□□□ 1.79
VPS28-206ENST00000526734 JARID2Q92833 1246 aaPredicted RBP26.23■■□□□ 1.79
VPS28-206ENST00000526734 TAF1DQ9H5J8 278 aaPredicted RBP26.23■■□□□ 1.79
VPS28-206ENST00000526734 NSFL1CQ9UNZ2 370 aaKnown RBP26.23■■□□□ 1.79
VPS28-206ENST00000526734 DUOX1Q9NRD9 1551 aa26.23■■□□□ 1.79
VPS28-206ENST00000526734 EYA3Q99504 573 aa26.22■■□□□ 1.79
VPS28-206ENST00000526734 SEC31BQ9NQW1 1179 aa26.22■■□□□ 1.79
VPS28-206ENST00000526734 PODXL2Q9NZ53 605 aa26.22■■□□□ 1.79
VPS28-206ENST00000526734 PNMA8AQ86V59 439 aaPredicted RBP26.21■■□□□ 1.79
VPS28-206ENST00000526734 TTLL11Q8NHH1 800 aa26.21■■□□□ 1.79
VPS28-206ENST00000526734 TAF1P21675 1872 aa26.2■■□□□ 1.78
VPS28-206ENST00000526734 LMOD1P29536 600 aaPredicted RBP26.2■■□□□ 1.78
VPS28-206ENST00000526734 BEND3Q5T5X7 828 aa26.2■■□□□ 1.78
VPS28-206ENST00000526734 DIEXFQ68CQ4 756 aaKnown RBP26.2■■□□□ 1.78
VPS28-206ENST00000526734 CHADLQ6NUI6 762 aa26.2■■□□□ 1.78
VPS28-206ENST00000526734 LDHDQ86WU2 507 aa26.2■■□□□ 1.78
VPS28-206ENST00000526734 CT47B1P0C2W7 299 aaPredicted RBP26.19■■□□□ 1.78
VPS28-206ENST00000526734 GPSM2P81274 684 aa26.19■■□□□ 1.78
VPS28-206ENST00000526734 WASHC4Q2M389 1173 aa26.19■■□□□ 1.78
VPS28-206ENST00000526734 GJA3Q9Y6H8 435 aa26.19■■□□□ 1.78
VPS28-206ENST00000526734 F6X3S4 739 aa26.18■■□□□ 1.78
VPS28-206ENST00000526734 C6orf229H3BNL8 230 aa26.18■■□□□ 1.78
VPS28-206ENST00000526734 ALDH1L1O75891 902 aa26.18■■□□□ 1.78
VPS28-206ENST00000526734 EPHX2P34913 555 aa26.18■■□□□ 1.78
VPS28-206ENST00000526734 CASP7P55210 303 aa26.18■■□□□ 1.78
VPS28-206ENST00000526734 PTPRCP08575 1304 aa26.17■■□□□ 1.78
VPS28-206ENST00000526734 LTBP1Q14766 1721 aa26.17■■□□□ 1.78
VPS28-206ENST00000526734 TNIP1Q15025 636 aa26.17■■□□□ 1.78
VPS28-206ENST00000526734 TRMT2AQ8IZ69 625 aaKnown RBP26.17■■□□□ 1.78
VPS28-206ENST00000526734 CCDC85AQ96PX6 553 aaPredicted RBP26.17■■□□□ 1.78
VPS28-206ENST00000526734 COL4A1P02462 1669 aa26.17■■□□□ 1.78
VPS28-206ENST00000526734 MYH3P11055 1940 aa26.16■■□□□ 1.78
VPS28-206ENST00000526734 ALDH1L2Q3SY69 923 aa26.16■■□□□ 1.78
VPS28-206ENST00000526734 CIAPIN1Q6FI81 312 aa26.16■■□□□ 1.78
VPS28-206ENST00000526734 TBC1D16Q8TBP0 767 aa26.16■■□□□ 1.78
VPS28-206ENST00000526734 GREM2Q9H772 168 aa26.16■■□□□ 1.78
VPS28-206ENST00000526734 ANKIB1Q9P2G1 1089 aa26.16■■□□□ 1.78
VPS28-206ENST00000526734 GGA1Q9UJY5 639 aa26.16■■□□□ 1.78
VPS28-206ENST00000526734 XDHP47989 1333 aa26.15■■□□□ 1.78
VPS28-206ENST00000526734 CXCL9Q07325 125 aa26.15■■□□□ 1.78
VPS28-206ENST00000526734 MRPL50Q8N5N7 158 aaKnown RBP26.15■■□□□ 1.78
VPS28-206ENST00000526734 SRCIN1Q9C0H9 1055 aa26.15■■□□□ 1.78
VPS28-206ENST00000526734 BSDC1Q9NW68 430 aaPredicted RBP26.15■■□□□ 1.78
VPS28-206ENST00000526734 POLLQ9UGP5 575 aa26.15■■□□□ 1.78
VPS28-206ENST00000526734 CSF1RP07333 972 aa26.14■■□□□ 1.78
VPS28-206ENST00000526734 GRM8O00222 908 aa26.13■■□□□ 1.77
VPS28-206ENST00000526734 UFL1O94874 794 aa26.13■■□□□ 1.77
VPS28-206ENST00000526734 IGHMBP2P38935 993 aaKnown RBP26.13■■□□□ 1.77
VPS28-206ENST00000526734 SCNN1DP51172 638 aa26.13■■□□□ 1.77
VPS28-206ENST00000526734 CDCA7LQ96GN5 454 aa26.13■■□□□ 1.77
VPS28-206ENST00000526734 ZC3H12CQ9C0D7 883 aaKnown RBP26.13■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms