RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 ARHGAP45Q92619 1136 aa6.81□□□□□ -1.32
HMGB1P40-201ENST00000525121 JARID2Q92833 1246 aaPredicted RBP6.81□□□□□ -1.32
HMGB1P40-201ENST00000525121 FRAT1Q92837 279 aaPredicted RBP6.81□□□□□ -1.32
HMGB1P40-201ENST00000525121 YTHDC1Q96MU7 727 aaKnown RBP6.81□□□□□ -1.32
HMGB1P40-201ENST00000525121 NOB1Q9ULX3 412 aaKnown RBP6.81□□□□□ -1.32
HMGB1P40-201ENST00000525121 CHMP3Q9Y3E7 222 aa6.81□□□□□ -1.32
HMGB1P40-201ENST00000525121 ZC3H4Q9UPT8 1303 aaKnown RBP6.8□□□□□ -1.32
HMGB1P40-201ENST00000525121 H7C1W4 665 aa6.8□□□□□ -1.32
HMGB1P40-201ENST00000525121 BRCA1P38398 1863 aaKnown RBP6.8□□□□□ -1.32
HMGB1P40-201ENST00000525121 IGHMBP2P38935 993 aaKnown RBP6.8□□□□□ -1.32
HMGB1P40-201ENST00000525121 FKBP4Q02790 459 aaKnown RBP eCLIP6.8□□□□□ -1.32
HMGB1P40-201ENST00000525121 RASSF7Q02833 373 aa6.8□□□□□ -1.32
HMGB1P40-201ENST00000525121 TAF7LQ5H9L4 462 aa6.8□□□□□ -1.32
HMGB1P40-201ENST00000525121 ZKSCAN2Q63HK3 967 aa6.8□□□□□ -1.32
HMGB1P40-201ENST00000525121 DPP8Q6V1X1 898 aaPredicted RBP6.8□□□□□ -1.32
HMGB1P40-201ENST00000525121 ANKRD18AQ8IVF6 992 aa6.8□□□□□ -1.32
HMGB1P40-201ENST00000525121 FTSJ3Q8IY81 847 aaKnown RBP6.8□□□□□ -1.32
HMGB1P40-201ENST00000525121 ATP6V0A2Q9Y487 856 aa6.8□□□□□ -1.32
HMGB1P40-201ENST00000525121 ARFGEF1Q9Y6D6 1849 aa6.8□□□□□ -1.32
HMGB1P40-201ENST00000525121 RTL9Q8NET4 1388 aa6.8□□□□□ -1.32
HMGB1P40-201ENST00000525121 LAMB2P55268 1798 aa6.8□□□□□ -1.32
HMGB1P40-201ENST00000525121 KDM2BQ8NHM5 1336 aa6.79□□□□□ -1.32
HMGB1P40-201ENST00000525121 CACNA1FO60840 1977 aa6.79□□□□□ -1.32
HMGB1P40-201ENST00000525121 ANKRD18BA2A2Z9 1011 aa6.79□□□□□ -1.32
HMGB1P40-201ENST00000525121 NFKBIEO00221 500 aa6.79□□□□□ -1.32
HMGB1P40-201ENST00000525121 UBTFL1P0CB47 393 aaPredicted RBP6.79□□□□□ -1.32
HMGB1P40-201ENST00000525121 MS4A1P11836 297 aa6.79□□□□□ -1.32
HMGB1P40-201ENST00000525121 RPS8P62241 208 aaKnown RBP6.79□□□□□ -1.32
HMGB1P40-201ENST00000525121 IFIT5Q13325 482 aaKnown RBP6.79□□□□□ -1.32
HMGB1P40-201ENST00000525121 CCDC57Q2TAC2 916 aa6.79□□□□□ -1.32
HMGB1P40-201ENST00000525121 ATF7IPQ6VMQ6 1270 aa6.79□□□□□ -1.32
HMGB1P40-201ENST00000525121 SP8Q8IXZ3 490 aa6.79□□□□□ -1.32
HMGB1P40-201ENST00000525121 MPNDQ8N594 471 aa6.79□□□□□ -1.32
HMGB1P40-201ENST00000525121 C7orf43Q8WVR3 580 aa6.79□□□□□ -1.32
HMGB1P40-201ENST00000525121 JDP2Q8WYK2 163 aa6.79□□□□□ -1.32
HMGB1P40-201ENST00000525121 CCDC85AQ96PX6 553 aaPredicted RBP6.79□□□□□ -1.32
HMGB1P40-201ENST00000525121 PSMD1Q99460 953 aa6.79□□□□□ -1.32
HMGB1P40-201ENST00000525121 MPHOSPH8Q99549 860 aa6.79□□□□□ -1.32
HMGB1P40-201ENST00000525121 PLA2G12BQ9BX93 195 aa6.79□□□□□ -1.32
HMGB1P40-201ENST00000525121 G3V3G9 751 aa6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 BCAR3O75815 825 aa6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 ITGA6P23229 1130 aa6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 IARSP41252 1262 aaKnown RBP6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 FAM161AQ3B820 660 aa6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 DCAF8Q5TAQ9 597 aa6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 DPY19L2Q6NUT2 758 aa6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 LARGE2Q8N3Y3 721 aa6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 TTLL11Q8NHH1 800 aa6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 ZNF526Q8TF50 670 aaPredicted RBP6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 CELF1Q92879 486 aaKnown RBP6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 EYA3Q99504 573 aa6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 VPS33BQ9H267 617 aa6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 GREM2Q9H772 168 aa6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 GPBP1L1Q9HC44 474 aaPredicted RBP6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 ZNF277Q9NRM2 450 aaPredicted RBP6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 ANKIB1Q9P2G1 1089 aa6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 RCAN3Q9UKA8 241 aa6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 DDX60Q8IY21 1712 aaKnown RBP6.78□□□□□ -1.32
HMGB1P40-201ENST00000525121 C6orf229H3BNL8 230 aa6.77□□□□□ -1.33
HMGB1P40-201ENST00000525121 PPIP5K2O43314 1243 aa6.77□□□□□ -1.33
HMGB1P40-201ENST00000525121 GNAI3P08754 354 aa6.77□□□□□ -1.33
HMGB1P40-201ENST00000525121 TRIM27P14373 513 aa6.77□□□□□ -1.33
HMGB1P40-201ENST00000525121 KCNJ4P48050 445 aa6.77□□□□□ -1.33
HMGB1P40-201ENST00000525121 CASP7P55210 303 aa6.77□□□□□ -1.33
HMGB1P40-201ENST00000525121 EIF6P56537 245 aaKnown RBP6.77□□□□□ -1.33
HMGB1P40-201ENST00000525121 LMBR1LQ6UX01 489 aa6.77□□□□□ -1.33
HMGB1P40-201ENST00000525121 OLFM4Q6UX06 510 aa6.77□□□□□ -1.33
HMGB1P40-201ENST00000525121 NIM1KQ8IY84 436 aa6.77□□□□□ -1.33
HMGB1P40-201ENST00000525121 C16orf71Q8IYS4 520 aaPredicted RBP6.77□□□□□ -1.33
HMGB1P40-201ENST00000525121 ZNF784Q8NCA9 323 aaPredicted RBP6.77□□□□□ -1.33
HMGB1P40-201ENST00000525121 CLUAP1Q96AJ1 413 aa6.77□□□□□ -1.33
HMGB1P40-201ENST00000525121 SEC31BQ9NQW1 1179 aa6.77□□□□□ -1.33
HMGB1P40-201ENST00000525121 GGA1Q9UJY5 639 aa6.77□□□□□ -1.33
HMGB1P40-201ENST00000525121 NSFL1CQ9UNZ2 370 aaKnown RBP6.77□□□□□ -1.33
HMGB1P40-201ENST00000525121 UTYO14607 1347 aa6.76□□□□□ -1.33
HMGB1P40-201ENST00000525121 XDHP47989 1333 aa6.76□□□□□ -1.33
HMGB1P40-201ENST00000525121 SLX4Q8IY92 1834 aa6.76□□□□□ -1.33
HMGB1P40-201ENST00000525121 UFL1O94874 794 aa6.76□□□□□ -1.33
HMGB1P40-201ENST00000525121 CSF1RP07333 972 aa6.76□□□□□ -1.33
HMGB1P40-201ENST00000525121 NBPF7P0C2Y1 421 aaPredicted RBP6.76□□□□□ -1.33
HMGB1P40-201ENST00000525121 FOXO4P98177 505 aa6.76□□□□□ -1.33
HMGB1P40-201ENST00000525121 WASHC4Q2M389 1173 aa6.76□□□□□ -1.33
HMGB1P40-201ENST00000525121 INTS3Q68E01 1043 aaKnown RBP6.76□□□□□ -1.33
HMGB1P40-201ENST00000525121 ITPRIPQ8IWB1 547 aa6.76□□□□□ -1.33
HMGB1P40-201ENST00000525121 DZIP1LQ8IYY4 767 aaKnown RBP6.76□□□□□ -1.33
HMGB1P40-201ENST00000525121 SUCLG2Q96I99 432 aa6.76□□□□□ -1.33
HMGB1P40-201ENST00000525121 ANKRD2Q9GZV1 360 aa6.76□□□□□ -1.33
HMGB1P40-201ENST00000525121 CHMP4BQ9H444 224 aaKnown RBP6.76□□□□□ -1.33
HMGB1P40-201ENST00000525121 BICC1Q9H694 974 aaKnown RBP6.76□□□□□ -1.33
HMGB1P40-201ENST00000525121 CNNM1Q9NRU3 951 aa6.76□□□□□ -1.33
HMGB1P40-201ENST00000525121 BSDC1Q9NW68 430 aaPredicted RBP6.76□□□□□ -1.33
HMGB1P40-201ENST00000525121 CACNA1SQ13698 1873 aa6.76□□□□□ -1.33
HMGB1P40-201ENST00000525121 CHD4Q14839 1912 aa6.76□□□□□ -1.33
HMGB1P40-201ENST00000525121 ATP2B4P23634 1241 aa6.75□□□□□ -1.33
HMGB1P40-201ENST00000525121 GPSM2P81274 684 aa6.75□□□□□ -1.33
HMGB1P40-201ENST00000525121 KIAA2012Q0VF49 1180 aa6.75□□□□□ -1.33
HMGB1P40-201ENST00000525121 AOC3Q16853 763 aa6.75□□□□□ -1.33
HMGB1P40-201ENST00000525121 LDHAL6AQ6ZMR3 332 aa6.75□□□□□ -1.33
HMGB1P40-201ENST00000525121 RTFDC1Q9BY42 306 aaPredicted RBP6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms