RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 GBP2P32456 591 aaPredicted RBP18.72■□□□□ 0.59
PCDHA3-201ENST00000522353 TTC22Q5TAA0 569 aa18.72■□□□□ 0.59
PCDHA3-201ENST00000522353 MPNDQ8N594 471 aa18.72■□□□□ 0.59
PCDHA3-201ENST00000522353 DDX19AQ9NUU7 478 aaKnown RBP18.72■□□□□ 0.59
PCDHA3-201ENST00000522353 IRS4O14654 1257 aaPredicted RBP18.72■□□□□ 0.59
PCDHA3-201ENST00000522353 IFIT1BQ5T764 474 aaKnown RBP18.72■□□□□ 0.59
PCDHA3-201ENST00000522353 ITSN2Q9NZM3 1697 aa18.72■□□□□ 0.59
PCDHA3-201ENST00000522353 SLC4A8Q2Y0W8 1093 aa18.72■□□□□ 0.59
PCDHA3-201ENST00000522353 SLC9C2Q5TAH2 1124 aa18.72■□□□□ 0.59
PCDHA3-201ENST00000522353 FSIP1Q8NA03 581 aa18.72■□□□□ 0.59
PCDHA3-201ENST00000522353 ZBTB43O43298 467 aa18.71■□□□□ 0.59
PCDHA3-201ENST00000522353 DRC1Q96MC2 740 aa18.71■□□□□ 0.59
PCDHA3-201ENST00000522353 ASXL1Q8IXJ9 1541 aa18.71■□□□□ 0.59
PCDHA3-201ENST00000522353 GNAT2P19087 354 aa18.71■□□□□ 0.59
PCDHA3-201ENST00000522353 SYCP3Q8IZU3 236 aa18.71■□□□□ 0.59
PCDHA3-201ENST00000522353 VEZTQ9HBM0 779 aa18.71■□□□□ 0.59
PCDHA3-201ENST00000522353 MAP3K5Q99683 1374 aa18.71■□□□□ 0.59
PCDHA3-201ENST00000522353 ENOX2Q16206 610 aaKnown RBP18.71■□□□□ 0.59
PCDHA3-201ENST00000522353 TBCAO75347 108 aaKnown RBP18.71■□□□□ 0.59
PCDHA3-201ENST00000522353 ANAPC15P60006 121 aa18.71■□□□□ 0.59
PCDHA3-201ENST00000522353 ZSCAN12O43309 604 aa18.7■□□□□ 0.58
PCDHA3-201ENST00000522353 ATP8B2P98198 1209 aa18.7■□□□□ 0.58
PCDHA3-201ENST00000522353 PICALMQ13492 652 aa18.7■□□□□ 0.58
PCDHA3-201ENST00000522353 TBC1D9Q6ZT07 1266 aa18.7■□□□□ 0.58
PCDHA3-201ENST00000522353 TRMT1LQ7Z2T5 733 aaKnown RBP18.7■□□□□ 0.58
PCDHA3-201ENST00000522353 SOS1Q07889 1333 aaPredicted RBP18.7■□□□□ 0.58
PCDHA3-201ENST00000522353 LMOD1P29536 600 aaPredicted RBP18.7■□□□□ 0.58
PCDHA3-201ENST00000522353 CCDC40Q4G0X9 1142 aa18.7■□□□□ 0.58
PCDHA3-201ENST00000522353 TCERG1LQ5VWI1 586 aa18.7■□□□□ 0.58
PCDHA3-201ENST00000522353 RBM27Q9P2N5 1060 aaKnown RBP18.7■□□□□ 0.58
PCDHA3-201ENST00000522353 GNPATO15228 680 aa18.7■□□□□ 0.58
PCDHA3-201ENST00000522353 TOP1P11387 765 aaKnown RBP18.7■□□□□ 0.58
PCDHA3-201ENST00000522353 ESPNB1AK53 854 aa18.7■□□□□ 0.58
PCDHA3-201ENST00000522353 MTIF2P46199 727 aaKnown RBP18.7■□□□□ 0.58
PCDHA3-201ENST00000522353 MCMDC2Q4G0Z9 681 aa18.7■□□□□ 0.58
PCDHA3-201ENST00000522353 KLF18A0A0U1RQI7 1052 aa18.69■□□□□ 0.58
PCDHA3-201ENST00000522353 FAM114A1Q8IWE2 563 aa18.69■□□□□ 0.58
PCDHA3-201ENST00000522353 ANKRD44Q8N8A2 993 aa18.69■□□□□ 0.58
PCDHA3-201ENST00000522353 GJB2P29033 226 aa18.69■□□□□ 0.58
PCDHA3-201ENST00000522353 RBM25P49756 843 aaKnown RBP18.69■□□□□ 0.58
PCDHA3-201ENST00000522353 TAX1BP1Q86VP1 789 aa18.69■□□□□ 0.58
PCDHA3-201ENST00000522353 EYA1Q99502 592 aa18.69■□□□□ 0.58
PCDHA3-201ENST00000522353 TDRD12Q587J7 1177 aaKnown RBP18.68■□□□□ 0.58
PCDHA3-201ENST00000522353 USP37Q86T82 979 aa18.68■□□□□ 0.58
PCDHA3-201ENST00000522353 CKAP2LQ8IYA6 745 aa18.68■□□□□ 0.58
PCDHA3-201ENST00000522353 MAGEB6P1A0A0J9YX57 407 aa18.68■□□□□ 0.58
PCDHA3-201ENST00000522353 GOLGA6L7A0A1B0GV03 622 aa18.68■□□□□ 0.58
PCDHA3-201ENST00000522353 USO1O60763 962 aaKnown RBP18.68■□□□□ 0.58
PCDHA3-201ENST00000522353 CCDC174Q6PII3 467 aa18.68■□□□□ 0.58
PCDHA3-201ENST00000522353 STX6O43752 255 aa18.68■□□□□ 0.58
PCDHA3-201ENST00000522353 TNNI2P48788 182 aa18.68■□□□□ 0.58
PCDHA3-201ENST00000522353 GRM1Q13255 1194 aa18.68■□□□□ 0.58
PCDHA3-201ENST00000522353 HDAC1Q13547 482 aaPredicted RBP18.68■□□□□ 0.58
PCDHA3-201ENST00000522353 CENPHQ9H3R5 247 aa18.68■□□□□ 0.58
PCDHA3-201ENST00000522353 HOXC9P31274 260 aa18.68■□□□□ 0.58
PCDHA3-201ENST00000522353 RTN1Q16799 776 aa18.68■□□□□ 0.58
PCDHA3-201ENST00000522353 BRF1Q92994 677 aa18.68■□□□□ 0.58
PCDHA3-201ENST00000522353 RBM17Q96I25 401 aaKnown RBP18.68■□□□□ 0.58
PCDHA3-201ENST00000522353 KIAA0754O94854 1291 aa18.67■□□□□ 0.58
PCDHA3-201ENST00000522353 YEATS4O95619 227 aa18.67■□□□□ 0.58
PCDHA3-201ENST00000522353 PARP10Q53GL7 1025 aa18.67■□□□□ 0.58
PCDHA3-201ENST00000522353 ZRANB1Q9UGI0 708 aa18.67■□□□□ 0.58
PCDHA3-201ENST00000522353 UGGT2Q9NYU1 1516 aa18.67■□□□□ 0.58
PCDHA3-201ENST00000522353 C8orf58Q8NAV2 365 aa18.67■□□□□ 0.58
PCDHA3-201ENST00000522353 UBXN4Q92575 508 aa18.67■□□□□ 0.58
PCDHA3-201ENST00000522353 GBP3Q9H0R5 595 aa18.67■□□□□ 0.58
PCDHA3-201ENST00000522353 ZSCAN16Q9H4T2 348 aaPredicted RBP18.67■□□□□ 0.58
PCDHA3-201ENST00000522353 CCNL1Q9UK58 526 aaPredicted RBP18.67■□□□□ 0.58
PCDHA3-201ENST00000522353 ZFYVE9O95405 1425 aa18.67■□□□□ 0.58
PCDHA3-201ENST00000522353 CCDC102BQ68D86 513 aa18.67■□□□□ 0.58
PCDHA3-201ENST00000522353 CNBD1Q8NA66 436 aa18.67■□□□□ 0.58
PCDHA3-201ENST00000522353 FERMT2Q96AC1 680 aa18.67■□□□□ 0.58
PCDHA3-201ENST00000522353 ABCC1P33527 1531 aa18.67■□□□□ 0.58
PCDHA3-201ENST00000522353 PRAG1Q86YV5 1406 aa18.67■□□□□ 0.58
PCDHA3-201ENST00000522353 RNMTO43148 476 aaKnown RBP18.66■□□□□ 0.58
PCDHA3-201ENST00000522353 POLR3AO14802 1390 aaPredicted RBP18.66■□□□□ 0.58
PCDHA3-201ENST00000522353 CALM1P0DP23 149 aa18.66■□□□□ 0.58
PCDHA3-201ENST00000522353 CALM2P0DP24 149 aa18.66■□□□□ 0.58
PCDHA3-201ENST00000522353 CALM3P0DP25 149 aa18.66■□□□□ 0.58
PCDHA3-201ENST00000522353 PRKCSHP14314 528 aaPredicted RBP18.66■□□□□ 0.58
PCDHA3-201ENST00000522353 TSHZ3Q63HK5 1081 aa18.66■□□□□ 0.58
PCDHA3-201ENST00000522353 ZSCAN30Q86W11 494 aa18.66■□□□□ 0.58
PCDHA3-201ENST00000522353 LDHBP07195 334 aaKnown RBP18.66■□□□□ 0.58
PCDHA3-201ENST00000522353 SMARCC2Q8TAQ2 1214 aa18.66■□□□□ 0.58
PCDHA3-201ENST00000522353 BICD1Q96G01 975 aa18.66■□□□□ 0.58
PCDHA3-201ENST00000522353 KIF5CO60282 957 aa18.65■□□□□ 0.58
PCDHA3-201ENST00000522353 RBM26Q5T8P6 1007 aaKnown RBP18.65■□□□□ 0.58
PCDHA3-201ENST00000522353 MRPL50Q8N5N7 158 aaKnown RBP18.65■□□□□ 0.58
PCDHA3-201ENST00000522353 VTI1AQ96AJ9 217 aa18.65■□□□□ 0.58
PCDHA3-201ENST00000522353 CCDC97Q96F63 343 aaPredicted RBP18.65■□□□□ 0.58
PCDHA3-201ENST00000522353 PAG1Q9NWQ8 432 aa18.65■□□□□ 0.58
PCDHA3-201ENST00000522353 ABCC2Q92887 1545 aa18.65■□□□□ 0.58
PCDHA3-201ENST00000522353 PDE1AP54750 535 aa18.65■□□□□ 0.58
PCDHA3-201ENST00000522353 NUP88Q99567 741 aaPredicted RBP18.65■□□□□ 0.58
PCDHA3-201ENST00000522353 MAP3K19Q56UN5 1328 aa18.65■□□□□ 0.58
PCDHA3-201ENST00000522353 RMND1Q9NWS8 449 aa18.64■□□□□ 0.57
PCDHA3-201ENST00000522353 C6orf50Q9HD87 102 aa18.64■□□□□ 0.57
PCDHA3-201ENST00000522353 DDX21Q9NR30 783 aaKnown RBP eCLIP18.64■□□□□ 0.57
PCDHA3-201ENST00000522353 USP8P40818 1118 aa18.64■□□□□ 0.57
PCDHA3-201ENST00000522353 MCM9Q9NXL9 1143 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms