RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 RTCBQ9Y3I0 505 aaKnown RBP10.75□□□□□ -0.69
NUP54-209ENST00000510569 AFF1P51825 1210 aaKnown RBP10.74□□□□□ -0.69
NUP54-209ENST00000510569 GPLD1P80108 840 aa10.74□□□□□ -0.69
NUP54-209ENST00000510569 C16orf46Q6P387 395 aa10.74□□□□□ -0.69
NUP54-209ENST00000510569 ILDR2Q71H61 639 aa10.74□□□□□ -0.69
NUP54-209ENST00000510569 DHX32Q7L7V1 743 aaKnown RBP10.74□□□□□ -0.69
NUP54-209ENST00000510569 CLP1Q92989 425 aaKnown RBP10.74□□□□□ -0.69
NUP54-209ENST00000510569 SAP130Q9H0E3 1048 aa10.74□□□□□ -0.69
NUP54-209ENST00000510569 FRRS1LQ9P0K9 344 aa10.74□□□□□ -0.69
NUP54-209ENST00000510569 APBA3O96018 575 aa10.73□□□□□ -0.69
NUP54-209ENST00000510569 FURINP09958 794 aa10.73□□□□□ -0.69
NUP54-209ENST00000510569 RARAP10276 462 aa10.73□□□□□ -0.69
NUP54-209ENST00000510569 TARSP26639 723 aaKnown RBP10.73□□□□□ -0.69
NUP54-209ENST00000510569 KRT25Q7Z3Z0 450 aa10.73□□□□□ -0.69
NUP54-209ENST00000510569 NUDT8Q8WV74 236 aa10.73□□□□□ -0.69
NUP54-209ENST00000510569 NACC1Q96RE7 527 aa10.73□□□□□ -0.69
NUP54-209ENST00000510569 ZBTB42B2RXF5 422 aa10.72□□□□□ -0.69
NUP54-209ENST00000510569 SASH3O75995 380 aa10.72□□□□□ -0.69
NUP54-209ENST00000510569 GATA4P43694 442 aa10.72□□□□□ -0.69
NUP54-209ENST00000510569 FAM35AQ86V20 835 aa10.72□□□□□ -0.69
NUP54-209ENST00000510569 ETFBKMTQ8IXQ9 262 aa10.72□□□□□ -0.69
NUP54-209ENST00000510569 KCNMB2Q9Y691 235 aa10.72□□□□□ -0.69
NUP54-209ENST00000510569 A0A0A0MRY4 1105 aa10.71□□□□□ -0.69
NUP54-209ENST00000510569 TNFRSF10BO14763 440 aa10.71□□□□□ -0.69
NUP54-209ENST00000510569 PTCD1O75127 700 aaKnown RBP10.71□□□□□ -0.69
NUP54-209ENST00000510569 RGS9O75916 674 aaPredicted RBP10.71□□□□□ -0.69
NUP54-209ENST00000510569 TRAPPC3LQ5T215 181 aa10.71□□□□□ -0.69
NUP54-209ENST00000510569 RGL4Q8IZJ4 473 aa10.71□□□□□ -0.69
NUP54-209ENST00000510569 LPIN3Q9BQK8 851 aa10.71□□□□□ -0.69
NUP54-209ENST00000510569 USP20Q9Y2K6 914 aa10.71□□□□□ -0.69
NUP54-209ENST00000510569 XYLBO75191 536 aa10.7□□□□□ -0.7
NUP54-209ENST00000510569 BRD2P25440 801 aaKnown RBP10.7□□□□□ -0.7
NUP54-209ENST00000510569 NRLP54845 237 aa10.7□□□□□ -0.7
NUP54-209ENST00000510569 SLAIN2Q9P270 581 aa10.7□□□□□ -0.7
NUP54-209ENST00000510569 GTF3C3Q9Y5Q9 886 aa10.7□□□□□ -0.7
NUP54-209ENST00000510569 HOXD8P13378 290 aaPredicted RBP10.69□□□□□ -0.7
NUP54-209ENST00000510569 CPB1P15086 417 aa10.69□□□□□ -0.7
NUP54-209ENST00000510569 ELNP15502 786 aa10.69□□□□□ -0.7
NUP54-209ENST00000510569 GRIK4Q16099 956 aa10.69□□□□□ -0.7
NUP54-209ENST00000510569 GRIK5Q16478 980 aa10.69□□□□□ -0.7
NUP54-209ENST00000510569 FAM26DQ5JW98 314 aa10.69□□□□□ -0.7
NUP54-209ENST00000510569 PERM1Q5SV97 790 aa10.69□□□□□ -0.7
NUP54-209ENST00000510569 CAPN12Q6ZSI9 719 aa10.69□□□□□ -0.7
NUP54-209ENST00000510569 TTC9Q92623 222 aa10.69□□□□□ -0.7
NUP54-209ENST00000510569 MKNK1Q9BUB5 465 aa10.69□□□□□ -0.7
NUP54-209ENST00000510569 TLR7Q9NYK1 1049 aaKnown RBP10.69□□□□□ -0.7
NUP54-209ENST00000510569 ARID4AP29374 1257 aaPredicted RBP10.68□□□□□ -0.7
NUP54-209ENST00000510569 RAC1P63000 192 aa10.68□□□□□ -0.7
NUP54-209ENST00000510569 CMTR1Q8N1G2 835 aaKnown RBP10.68□□□□□ -0.7
NUP54-209ENST00000510569 DOC2BQ14184 412 aa10.67□□□□□ -0.7
NUP54-209ENST00000510569 TRIP4Q15650 581 aaPredicted RBP10.67□□□□□ -0.7
NUP54-209ENST00000510569 ARID3CA6NKF2 412 aa10.66□□□□□ -0.7
NUP54-209ENST00000510569 SOX18P35713 384 aa10.66□□□□□ -0.7
NUP54-209ENST00000510569 MLLT1Q03111 559 aaPredicted RBP10.66□□□□□ -0.7
NUP54-209ENST00000510569 FMR1NBQ8N0W7 255 aaPredicted RBP10.66□□□□□ -0.7
NUP54-209ENST00000510569 C9orf172C9J069 976 aa10.65□□□□□ -0.7
NUP54-209ENST00000510569 SELPP16109 830 aa10.65□□□□□ -0.7
NUP54-209ENST00000510569 PLAURQ03405 335 aa10.65□□□□□ -0.7
NUP54-209ENST00000510569 MSL1Q68DK7 614 aa10.65□□□□□ -0.7
NUP54-209ENST00000510569 ELMSAN1Q6PJG2 1045 aa10.65□□□□□ -0.7
NUP54-209ENST00000510569 DTWD1Q8N5C7 304 aa10.65□□□□□ -0.7
NUP54-209ENST00000510569 MMP20O60882 483 aa10.64□□□□□ -0.71
NUP54-209ENST00000510569 ADGRE1Q14246 886 aa10.64□□□□□ -0.71
NUP54-209ENST00000510569 NAA30Q147X3 362 aaPredicted RBP10.64□□□□□ -0.71
NUP54-209ENST00000510569 DMRTC2Q8IXT2 367 aaPredicted RBP10.64□□□□□ -0.71
NUP54-209ENST00000510569 FAM13BQ9NYF5 915 aa10.64□□□□□ -0.71
NUP54-209ENST00000510569 PSAPP07602 524 aa10.63□□□□□ -0.71
NUP54-209ENST00000510569 ATP2B4P23634 1241 aa10.63□□□□□ -0.71
NUP54-209ENST00000510569 ITGB7P26010 798 aa10.63□□□□□ -0.71
NUP54-209ENST00000510569 MBTPS1Q14703 1052 aa10.63□□□□□ -0.71
NUP54-209ENST00000510569 NLRP13Q86W25 1043 aa10.63□□□□□ -0.71
NUP54-209ENST00000510569 LENG1Q96BZ8 264 aaPredicted RBP10.63□□□□□ -0.71
NUP54-209ENST00000510569 TPSG1Q9NRR2 321 aa10.63□□□□□ -0.71
NUP54-209ENST00000510569 ZAP70P43403 619 aa10.62□□□□□ -0.71
NUP54-209ENST00000510569 RSPO4Q2I0M5 234 aaPredicted RBP10.62□□□□□ -0.71
NUP54-209ENST00000510569 NKAPLQ5M9Q1 402 aa10.62□□□□□ -0.71
NUP54-209ENST00000510569 SMG9Q9H0W8 520 aaKnown RBP10.62□□□□□ -0.71
NUP54-209ENST00000510569 STIM2Q9P246 746 aa10.62□□□□□ -0.71
NUP54-209ENST00000510569 EIF2AK2P19525 551 aaKnown RBP10.61□□□□□ -0.71
NUP54-209ENST00000510569 NRG1Q02297 640 aaPredicted RBP10.61□□□□□ -0.71
NUP54-209ENST00000510569 HFE2Q6ZVN8 426 aa10.61□□□□□ -0.71
NUP54-209ENST00000510569 PIK3R5Q8WYR1 880 aa10.61□□□□□ -0.71
NUP54-209ENST00000510569 LOC102724428A0A0B4J2F2 783 aa10.6□□□□□ -0.71
NUP54-209ENST00000510569 SIK1P57059 783 aa10.6□□□□□ -0.71
NUP54-209ENST00000510569 SHISA2Q6UWI4 295 aa10.6□□□□□ -0.71
NUP54-209ENST00000510569 FBXO11Q86XK2 927 aa10.6□□□□□ -0.71
NUP54-209ENST00000510569 WFDC8Q8IUA0 241 aa10.6□□□□□ -0.71
NUP54-209ENST00000510569 CCDC82Q8N4S0 544 aa10.6□□□□□ -0.71
NUP54-209ENST00000510569 ABTB2Q8N961 1025 aa10.6□□□□□ -0.71
NUP54-209ENST00000510569 UBAP1LF5GYI3 381 aa10.59□□□□□ -0.71
NUP54-209ENST00000510569 PLD4Q96BZ4 506 aa10.59□□□□□ -0.71
NUP54-209ENST00000510569 NSUN5Q96P11 429 aaKnown RBP10.59□□□□□ -0.71
NUP54-209ENST00000510569 TXNRD3Q86VQ6 643 aa10.58□□□□□ -0.72
NUP54-209ENST00000510569 OR13H1Q8NG92 308 aa10.58□□□□□ -0.72
NUP54-209ENST00000510569 SEMA6BQ9H3T3 888 aa10.58□□□□□ -0.72
NUP54-209ENST00000510569 SEPT3Q9UH03 358 aa10.58□□□□□ -0.72
NUP54-209ENST00000510569 J3QW42 95 aa10.57□□□□□ -0.72
NUP54-209ENST00000510569 ZBTB39O15060 712 aa10.57□□□□□ -0.72
NUP54-209ENST00000510569 PPP1R15AO75807 674 aaPredicted RBP10.57□□□□□ -0.72
NUP54-209ENST00000510569 DYRK3O43781 588 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms