RNA–Protein interactions for RNA: ENST00000497539.5

SNRNP200-208, Transcript of small nuclear ribonucleoprotein U5 subunit 200, human

TSL 1 (best)

Gene SNRNP200, Length 2,666 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP200-208	ENST00000497539	NASP	P49321	788 aa	Predicted RBP	13.93	□□□□□ -0.18
SNRNP200-208	ENST00000497539	DNAJC10	Q8IXB1	793 aa		13.93	□□□□□ -0.18
SNRNP200-208	ENST00000497539	LRP5	O75197	1615 aa		13.93	□□□□□ -0.18
SNRNP200-208	ENST00000497539	NUP98	P52948	1817 aa		13.93	□□□□□ -0.18
SNRNP200-208	ENST00000497539	CDHR2	Q9BYE9	1310 aa		13.92	□□□□□ -0.18
SNRNP200-208	ENST00000497539	LAMB2	P55268	1798 aa		13.92	□□□□□ -0.18
SNRNP200-208	ENST00000497539	CLGN	O14967	610 aa		13.92	□□□□□ -0.18
SNRNP200-208	ENST00000497539	CIAO1	O76071	339 aa		13.92	□□□□□ -0.18
SNRNP200-208	ENST00000497539	IRX3	P78415	501 aa	Predicted RBP	13.92	□□□□□ -0.18
SNRNP200-208	ENST00000497539	ISY1	Q9ULR0	285 aa	Known RBP	13.92	□□□□□ -0.18
SNRNP200-208	ENST00000497539	JCAD	Q9P266	1359 aa		13.92	□□□□□ -0.18
SNRNP200-208	ENST00000497539	THSD7A	Q9UPZ6	1657 aa		13.92	□□□□□ -0.18
SNRNP200-208	ENST00000497539	MAP3K15	Q6ZN16	1313 aa		13.92	□□□□□ -0.18
SNRNP200-208	ENST00000497539	ATP5J2-PTCD1	G3V325	749 aa		13.92	□□□□□ -0.18
SNRNP200-208	ENST00000497539	ST18	O60284	1047 aa		13.92	□□□□□ -0.18
SNRNP200-208	ENST00000497539	HSPA4	P34932	840 aa		13.92	□□□□□ -0.18
SNRNP200-208	ENST00000497539	MCM2	P49736	904 aa		13.92	□□□□□ -0.18
SNRNP200-208	ENST00000497539	MCTP1	Q6DN14	999 aa		13.92	□□□□□ -0.18
SNRNP200-208	ENST00000497539	MYH3	P11055	1940 aa		13.92	□□□□□ -0.18
SNRNP200-208	ENST00000497539	BCOR	Q6W2J9	1755 aa		13.91	□□□□□ -0.18
SNRNP200-208	ENST00000497539	BAG4	O95429	457 aa	Known RBP	13.91	□□□□□ -0.18
SNRNP200-208	ENST00000497539	PKP1	Q13835	747 aa		13.91	□□□□□ -0.18
SNRNP200-208	ENST00000497539	KIF6	Q6ZMV9	814 aa		13.91	□□□□□ -0.18
SNRNP200-208	ENST00000497539	KCNB2	Q92953	911 aa		13.91	□□□□□ -0.18
SNRNP200-208	ENST00000497539	CHAMP1	Q96JM3	812 aa		13.91	□□□□□ -0.18
SNRNP200-208	ENST00000497539	VGLL3	A8MV65	326 aa		13.91	□□□□□ -0.18
SNRNP200-208	ENST00000497539	KIF20A	O95235	890 aa		13.91	□□□□□ -0.18
SNRNP200-208	ENST00000497539	PCCA	P05165	728 aa	Predicted RBP	13.91	□□□□□ -0.18
SNRNP200-208	ENST00000497539	HSP90AB3P	Q58FF7	597 aa		13.91	□□□□□ -0.18
SNRNP200-208	ENST00000497539	RUFY2	Q8WXA3	655 aa		13.91	□□□□□ -0.18
SNRNP200-208	ENST00000497539	SLC4A9	Q96Q91	983 aa		13.91	□□□□□ -0.18
SNRNP200-208	ENST00000497539	LSG1	Q9H089	658 aa	Known RBP	13.91	□□□□□ -0.18
SNRNP200-208	ENST00000497539	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	13.91	□□□□□ -0.18
SNRNP200-208	ENST00000497539	ATP5J	P18859	108 aa		13.9	□□□□□ -0.18
SNRNP200-208	ENST00000497539	KIAA1211	Q6ZU35	1233 aa		13.9	□□□□□ -0.18
SNRNP200-208	ENST00000497539	ERVV-1	B6SEH8	477 aa		13.9	□□□□□ -0.18
SNRNP200-208	ENST00000497539	GRIPAP1	Q4V328	841 aa		13.9	□□□□□ -0.18
SNRNP200-208	ENST00000497539	TNNI3K	Q59H18	835 aa		13.9	□□□□□ -0.18
SNRNP200-208	ENST00000497539	CLEC17A	Q6ZS10	378 aa		13.9	□□□□□ -0.18
SNRNP200-208	ENST00000497539	FPGT-TNNI3K	V9GXZ4	949 aa		13.9	□□□□□ -0.18
SNRNP200-208	ENST00000497539	ZNF609	O15014	1411 aa		13.9	□□□□□ -0.18
SNRNP200-208	ENST00000497539	GOLGA6L22	H0YM25	854 aa		13.89	□□□□□ -0.19
SNRNP200-208	ENST00000497539	IL6ST	P40189	918 aa	Predicted RBP	13.89	□□□□□ -0.19
SNRNP200-208	ENST00000497539	CAVIN1	Q6NZI2	390 aa	Known RBP	13.89	□□□□□ -0.19
SNRNP200-208	ENST00000497539	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.89	□□□□□ -0.19
SNRNP200-208	ENST00000497539	ANP32B	Q92688	251 aa	Known RBP	13.89	□□□□□ -0.19
SNRNP200-208	ENST00000497539	DDB1	Q16531	1140 aa		13.89	□□□□□ -0.19
SNRNP200-208	ENST00000497539	LMBR1L	Q6UX01	489 aa		13.89	□□□□□ -0.19
SNRNP200-208	ENST00000497539	IL25	Q9H293	177 aa		13.89	□□□□□ -0.19
SNRNP200-208	ENST00000497539	ATG9A	Q7Z3C6	839 aa		13.88	□□□□□ -0.19
SNRNP200-208	ENST00000497539	ZBTB3	Q9H5J0	574 aa		13.88	□□□□□ -0.19
SNRNP200-208	ENST00000497539	ANO2	Q9NQ90	1003 aa		13.88	□□□□□ -0.19
SNRNP200-208	ENST00000497539	BCL9L	Q86UU0	1499 aa		13.88	□□□□□ -0.19
SNRNP200-208	ENST00000497539	CSF1R	P07333	972 aa		13.88	□□□□□ -0.19
SNRNP200-208	ENST00000497539	IL15	P40933	162 aa	Predicted RBP	13.88	□□□□□ -0.19
SNRNP200-208	ENST00000497539	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.88	□□□□□ -0.19
SNRNP200-208	ENST00000497539	CWC22	Q9HCG8	908 aa	Known RBP	13.88	□□□□□ -0.19
SNRNP200-208	ENST00000497539	MED23	Q9ULK4	1368 aa		13.88	□□□□□ -0.19
SNRNP200-208	ENST00000497539	ARAP2	Q8WZ64	1704 aa		13.88	□□□□□ -0.19
SNRNP200-208	ENST00000497539	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.87	□□□□□ -0.19
SNRNP200-208	ENST00000497539	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.87	□□□□□ -0.19
SNRNP200-208	ENST00000497539	TLR7	Q9NYK1	1049 aa	Known RBP	13.87	□□□□□ -0.19
SNRNP200-208	ENST00000497539	NHS	Q6T4R5	1651 aa		13.87	□□□□□ -0.19
SNRNP200-208	ENST00000497539	CCDC173	Q0VFZ6	552 aa		13.87	□□□□□ -0.19
SNRNP200-208	ENST00000497539	TFCP2	Q12800	502 aa		13.87	□□□□□ -0.19
SNRNP200-208	ENST00000497539	TAF3	Q5VWG9	929 aa		13.87	□□□□□ -0.19
SNRNP200-208	ENST00000497539	KLHDC4	Q8TBB5	520 aa		13.87	□□□□□ -0.19
SNRNP200-208	ENST00000497539	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.87	□□□□□ -0.19
SNRNP200-208	ENST00000497539	DBNL	Q9UJU6	430 aa	Known RBP	13.87	□□□□□ -0.19
SNRNP200-208	ENST00000497539	KLHL40	Q2TBA0	621 aa		13.87	□□□□□ -0.19
SNRNP200-208	ENST00000497539	MARCH10	Q8NA82	808 aa	Predicted RBP	13.87	□□□□□ -0.19
SNRNP200-208	ENST00000497539	SIL1	Q9H173	461 aa		13.87	□□□□□ -0.19
SNRNP200-208	ENST00000497539	DIAPH3	Q9NSV4	1193 aa		13.87	□□□□□ -0.19
SNRNP200-208	ENST00000497539	RBM27	Q9P2N5	1060 aa	Known RBP	13.87	□□□□□ -0.19
SNRNP200-208	ENST00000497539	PALD1	Q9ULE6	856 aa		13.87	□□□□□ -0.19
SNRNP200-208	ENST00000497539	EYA2	O00167	538 aa		13.86	□□□□□ -0.19
SNRNP200-208	ENST00000497539	RGL2	O15211	777 aa		13.86	□□□□□ -0.19
SNRNP200-208	ENST00000497539	CUL4A	Q13619	759 aa		13.86	□□□□□ -0.19
SNRNP200-208	ENST00000497539	VPS72	Q15906	364 aa		13.86	□□□□□ -0.19
SNRNP200-208	ENST00000497539	AK7	Q96M32	723 aa		13.86	□□□□□ -0.19
SNRNP200-208	ENST00000497539	ADAMTS2	O95450	1211 aa		13.86	□□□□□ -0.19
SNRNP200-208	ENST00000497539	PRIM1	P49642	420 aa	Known RBP	13.86	□□□□□ -0.19
SNRNP200-208	ENST00000497539	ZSCAN30	Q86W11	494 aa		13.86	□□□□□ -0.19
SNRNP200-208	ENST00000497539	ZGPAT	Q8N5A5	531 aa	Known RBP	13.86	□□□□□ -0.19
SNRNP200-208	ENST00000497539	PALLD	Q8WX93	1383 aa		13.86	□□□□□ -0.19
SNRNP200-208	ENST00000497539	ABCC12	Q96J65	1359 aa		13.86	□□□□□ -0.19
SNRNP200-208	ENST00000497539	PPP1R9B	Q96SB3	815 aa		13.86	□□□□□ -0.19
SNRNP200-208	ENST00000497539	CCDC8	Q9H0W5	538 aa	Predicted RBP	13.86	□□□□□ -0.19
SNRNP200-208	ENST00000497539	MAP4K4	O95819	1239 aa	Predicted RBP	13.85	□□□□□ -0.19
SNRNP200-208	ENST00000497539	TERF1	P54274	439 aa		13.85	□□□□□ -0.19
SNRNP200-208	ENST00000497539	HAUS7	Q99871	368 aa		13.85	□□□□□ -0.19
SNRNP200-208	ENST00000497539	PRPF40A	O75400	957 aa	Known RBP	13.85	□□□□□ -0.19
SNRNP200-208	ENST00000497539	CYP2E1	P05181	493 aa	Predicted RBP	13.85	□□□□□ -0.19
SNRNP200-208	ENST00000497539	PTMS	P20962	102 aa		13.85	□□□□□ -0.19
SNRNP200-208	ENST00000497539	MSN	P26038	577 aa	Known RBP	13.85	□□□□□ -0.19
SNRNP200-208	ENST00000497539	NLRP10	Q86W26	655 aa		13.85	□□□□□ -0.19
SNRNP200-208	ENST00000497539	JARID2	Q92833	1246 aa	Predicted RBP	13.85	□□□□□ -0.19
SNRNP200-208	ENST00000497539	RBSN	Q9H1K0	784 aa		13.85	□□□□□ -0.19
SNRNP200-208	ENST00000497539	SCN7A	Q01118	1682 aa		13.84	□□□□□ -0.19
SNRNP200-208	ENST00000497539	SPATA31A6	Q5VVP1	1343 aa		13.84	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms