RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 IL15P40933 162 aaPredicted RBP13.24□□□□□ -0.29
CMSS1-208ENST00000496116 BLOC1S2Q6QNY1 142 aa13.24□□□□□ -0.29
CMSS1-208ENST00000496116 LRSAM1Q6UWE0 723 aa13.24□□□□□ -0.29
CMSS1-208ENST00000496116 CCDC83Q8IWF9 413 aa13.24□□□□□ -0.29
CMSS1-208ENST00000496116 HAUS7Q99871 368 aa13.24□□□□□ -0.29
CMSS1-208ENST00000496116 DBNDD2Q9BQY9 259 aa13.24□□□□□ -0.29
CMSS1-208ENST00000496116 LARP6Q9BRS8 491 aaKnown RBP13.24□□□□□ -0.29
CMSS1-208ENST00000496116 ZBTB3Q9H5J0 574 aa13.24□□□□□ -0.29
CMSS1-208ENST00000496116 GPR108Q9NPR9 543 aa13.24□□□□□ -0.29
CMSS1-208ENST00000496116 RBM27Q9P2N5 1060 aaKnown RBP13.24□□□□□ -0.29
CMSS1-208ENST00000496116 TJP1Q07157 1748 aa13.24□□□□□ -0.29
CMSS1-208ENST00000496116 KRT32Q14532 448 aa13.24□□□□□ -0.29
CMSS1-208ENST00000496116 TSGA10IPQ3SY00 556 aa13.24□□□□□ -0.29
CMSS1-208ENST00000496116 DNAJC2Q99543 621 aaKnown RBP13.24□□□□□ -0.29
CMSS1-208ENST00000496116 TEX13AQ9BXU3 409 aaPredicted RBP13.24□□□□□ -0.29
CMSS1-208ENST00000496116 ATG3Q9NT62 314 aa13.24□□□□□ -0.29
CMSS1-208ENST00000496116 TMEM63CQ9P1W3 806 aa13.24□□□□□ -0.29
CMSS1-208ENST00000496116 NHSL1Q5SYE7 1610 aa13.23□□□□□ -0.29
CMSS1-208ENST00000496116 GJB2P29033 226 aa13.23□□□□□ -0.29
CMSS1-208ENST00000496116 ZNF589Q86UQ0 364 aaPredicted RBP13.23□□□□□ -0.29
CMSS1-208ENST00000496116 TICAM2Q86XR7 235 aa13.23□□□□□ -0.29
CMSS1-208ENST00000496116 TMEM87AQ8NBN3 555 aa13.23□□□□□ -0.29
CMSS1-208ENST00000496116 ALDH8A1Q9H2A2 487 aaPredicted RBP13.23□□□□□ -0.29
CMSS1-208ENST00000496116 RRAGDQ9NQL2 400 aaPredicted RBP13.23□□□□□ -0.29
CMSS1-208ENST00000496116 TAF5LO75529 589 aa13.22□□□□□ -0.29
CMSS1-208ENST00000496116 PHF14O94880 888 aa13.22□□□□□ -0.29
CMSS1-208ENST00000496116 LARGE1O95461 756 aa13.22□□□□□ -0.29
CMSS1-208ENST00000496116 F13A1P00488 732 aa13.22□□□□□ -0.29
CMSS1-208ENST00000496116 PRIM1P49642 420 aaKnown RBP13.22□□□□□ -0.29
CMSS1-208ENST00000496116 FOXD4L6Q3SYB3 417 aaPredicted RBP13.22□□□□□ -0.29
CMSS1-208ENST00000496116 FOXD4L3Q6VB84 417 aaPredicted RBP13.22□□□□□ -0.29
CMSS1-208ENST00000496116 EDC3Q96F86 508 aaKnown RBP13.22□□□□□ -0.29
CMSS1-208ENST00000496116 SYCE3A1L190 88 aa13.22□□□□□ -0.29
CMSS1-208ENST00000496116 RPS6KB1P23443 525 aa13.22□□□□□ -0.29
CMSS1-208ENST00000496116 ME3Q16798 604 aa13.22□□□□□ -0.29
CMSS1-208ENST00000496116 CSPP1Q1MSJ5 1256 aa13.22□□□□□ -0.29
CMSS1-208ENST00000496116 MCMDC2Q4G0Z9 681 aa13.22□□□□□ -0.29
CMSS1-208ENST00000496116 USPL1Q5W0Q7 1092 aa13.22□□□□□ -0.29
CMSS1-208ENST00000496116 ATG9AQ7Z3C6 839 aa13.22□□□□□ -0.29
CMSS1-208ENST00000496116 USP48Q86UV5 1035 aa13.22□□□□□ -0.29
CMSS1-208ENST00000496116 VSIG10Q8N0Z9 540 aa13.22□□□□□ -0.29
CMSS1-208ENST00000496116 NEUROD6Q96NK8 337 aa13.22□□□□□ -0.29
CMSS1-208ENST00000496116 PPP1R9BQ96SB3 815 aa13.22□□□□□ -0.29
CMSS1-208ENST00000496116 NSFL1CQ9UNZ2 370 aaKnown RBP13.22□□□□□ -0.29
CMSS1-208ENST00000496116 TCHHQ07283 1943 aa13.21□□□□□ -0.29
CMSS1-208ENST00000496116 EYA2O00167 538 aa13.21□□□□□ -0.29
CMSS1-208ENST00000496116 CIAO1O76071 339 aa13.21□□□□□ -0.29
CMSS1-208ENST00000496116 KBTBD3Q8NAB2 608 aa13.21□□□□□ -0.29
CMSS1-208ENST00000496116 U3KPZ7 1027 aaPredicted RBP13.21□□□□□ -0.29
CMSS1-208ENST00000496116 TOGARAM1Q9Y4F4 1720 aa13.21□□□□□ -0.3
CMSS1-208ENST00000496116 KIF6Q6ZMV9 814 aa13.21□□□□□ -0.3
CMSS1-208ENST00000496116 TPCN1Q9ULQ1 816 aa13.21□□□□□ -0.3
CMSS1-208ENST00000496116 PALLDQ8WX93 1383 aa13.2□□□□□ -0.3
CMSS1-208ENST00000496116 PDCP20941 246 aa13.2□□□□□ -0.3
CMSS1-208ENST00000496116 TCIRG1Q13488 830 aa13.2□□□□□ -0.3
CMSS1-208ENST00000496116 DDX46Q7L014 1031 aaKnown RBP13.2□□□□□ -0.3
CMSS1-208ENST00000496116 ISCA1Q9BUE6 129 aa13.2□□□□□ -0.3
CMSS1-208ENST00000496116 RBSNQ9H1K0 784 aa13.2□□□□□ -0.3
CMSS1-208ENST00000496116 GDPD2Q9HCC8 539 aa13.2□□□□□ -0.3
CMSS1-208ENST00000496116 FBXO3Q9UK99 471 aa13.2□□□□□ -0.3
CMSS1-208ENST00000496116 SH3TC1Q8TE82 1336 aa13.2□□□□□ -0.3
CMSS1-208ENST00000496116 ZNF609O15014 1411 aa13.2□□□□□ -0.3
CMSS1-208ENST00000496116 STARD3NLO95772 234 aa13.19□□□□□ -0.3
CMSS1-208ENST00000496116 CLCN1P35523 988 aa13.19□□□□□ -0.3
CMSS1-208ENST00000496116 CCDC57Q2TAC2 916 aa13.19□□□□□ -0.3
CMSS1-208ENST00000496116 PAG1Q9NWQ8 432 aa13.19□□□□□ -0.3
CMSS1-208ENST00000496116 ESPNB1AK53 854 aa13.19□□□□□ -0.3
CMSS1-208ENST00000496116 TRIM28Q13263 835 aaKnown RBP13.19□□□□□ -0.3
CMSS1-208ENST00000496116 NEK1Q96PY6 1258 aa13.19□□□□□ -0.3
CMSS1-208ENST00000496116 HELLSQ9NRZ9 838 aa13.19□□□□□ -0.3
CMSS1-208ENST00000496116 MTMR6Q9Y217 621 aa13.19□□□□□ -0.3
CMSS1-208ENST00000496116 ZNF330Q9Y3S2 320 aaPredicted RBP13.19□□□□□ -0.3
CMSS1-208ENST00000496116 NDUFB9Q9Y6M9 179 aa13.19□□□□□ -0.3
CMSS1-208ENST00000496116 UBE2HP62256 183 aa13.18□□□□□ -0.3
CMSS1-208ENST00000496116 NECAB1Q8N987 351 aa13.18□□□□□ -0.3
CMSS1-208ENST00000496116 BTG4Q9NY30 223 aa13.18□□□□□ -0.3
CMSS1-208ENST00000496116 CNPY2Q9Y2B0 182 aa13.18□□□□□ -0.3
CMSS1-208ENST00000496116 SPEF2Q9C093 1822 aa13.18□□□□□ -0.3
CMSS1-208ENST00000496116 GOLIM4O00461 696 aa13.18□□□□□ -0.3
CMSS1-208ENST00000496116 GADD45BO75293 160 aaPredicted RBP13.18□□□□□ -0.3
CMSS1-208ENST00000496116 TIMM10P62072 90 aa13.18□□□□□ -0.3
CMSS1-208ENST00000496116 ST3GAL1Q11201 340 aa13.18□□□□□ -0.3
CMSS1-208ENST00000496116 LRRC24Q50LG9 513 aa13.18□□□□□ -0.3
CMSS1-208ENST00000496116 LARP1BQ659C4 914 aaKnown RBP13.18□□□□□ -0.3
CMSS1-208ENST00000496116 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.18□□□□□ -0.3
CMSS1-208ENST00000496116 PIGBQ92521 554 aa13.18□□□□□ -0.3
CMSS1-208ENST00000496116 CEP126Q9P2H0 1117 aa13.18□□□□□ -0.3
CMSS1-208ENST00000496116 AKAP2Q9Y2D5 859 aa13.18□□□□□ -0.3
CMSS1-208ENST00000496116 CCDC9Q9Y3X0 531 aaKnown RBP13.18□□□□□ -0.3
CMSS1-208ENST00000496116 A0A1B0GUL7 405 aa13.17□□□□□ -0.3
CMSS1-208ENST00000496116 VPS37CA5D8V6 355 aaPredicted RBP13.17□□□□□ -0.3
CMSS1-208ENST00000496116 LETM1O95202 739 aaPredicted RBP13.17□□□□□ -0.3
CMSS1-208ENST00000496116 PCCAP05165 728 aaPredicted RBP13.17□□□□□ -0.3
CMSS1-208ENST00000496116 IFIT1P09914 478 aaKnown RBP13.17□□□□□ -0.3
CMSS1-208ENST00000496116 TOB2Q14106 344 aaPredicted RBP13.17□□□□□ -0.3
CMSS1-208ENST00000496116 LRRFIP1Q32MZ4 808 aaKnown RBP13.17□□□□□ -0.3
CMSS1-208ENST00000496116 ZNF594Q96JF6 807 aaPredicted RBP13.17□□□□□ -0.3
CMSS1-208ENST00000496116 TSPY26PQ9H489 355 aa13.17□□□□□ -0.3
CMSS1-208ENST00000496116 HMGB1P09429 215 aaKnown RBP13.16□□□□□ -0.3
CMSS1-208ENST00000496116 CCDC158Q5M9N0 1113 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms