RNA–Protein interactions for RNA: ENST00000493792.1

TRAPPC12-222, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-222	ENST00000493792	ABCC12	Q96J65	1359 aa		13.32	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	COL11A2	P13942	1736 aa	Predicted RBP	13.31	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	ARFGEF2	Q9Y6D5	1785 aa		13.31	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.31	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	FMR1	Q06787	632 aa	Known RBP eCLIP	13.31	□□□□□ -0.28	2e-31	■■■■■ 109.2
TRAPPC12-222	ENST00000493792	SLFN5	Q08AF3	891 aa		13.31	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	CCDC93	Q567U6	631 aa		13.31	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	RTL5	Q5HYW3	569 aa	Predicted RBP	13.31	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	G2E3	Q7L622	706 aa		13.31	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	PNMA8A	Q86V59	439 aa	Predicted RBP	13.31	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	MYD88	Q99836	296 aa		13.31	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	SLX4	Q8IY92	1834 aa		13.31	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.31	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	DICER1	Q9UPY3	1922 aa	Known RBP	13.31	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	PI4KAP2	A4QPH2	592 aa		13.3	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	FKBP5	Q13451	457 aa	Predicted RBP	13.3	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	PI4KAP1	Q8N8J0	262 aa		13.3	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	RPGR	Q92834	1020 aa	Known RBP	13.3	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	MAP3K2	Q9Y2U5	619 aa		13.3	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	RNF123	Q5XPI4	1314 aa		13.3	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	CACNA1S	Q13698	1873 aa		13.29	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	CCDC85C	A6NKD9	419 aa		13.29	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	HCLS1	P14317	486 aa	Predicted RBP	13.29	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	NEXN	Q0ZGT2	675 aa		13.29	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	FLII	Q13045	1269 aa		13.29	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	CST9	Q5W186	159 aa		13.29	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	KSR2	Q6VAB6	950 aa		13.29	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	NLRP3	Q96P20	1036 aa		13.29	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	SH3TC1	Q8TE82	1336 aa		13.29	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	CRY2	Q49AN0	593 aa		13.28	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	RTKN2	Q8IZC4	609 aa		13.28	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	GPC2	Q8N158	579 aa		13.28	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	SYNE4	Q8N205	404 aa		13.28	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	FAM89A	Q96GI7	184 aa		13.28	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	ISCA1	Q9BUE6	129 aa		13.28	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	METTL22	Q9BUU2	404 aa	Predicted RBP	13.28	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	ABT1	Q9ULW3	272 aa	Known RBP	13.28	□□□□□ -0.28
TRAPPC12-222	ENST00000493792	ALDH1B1	P30837	517 aa		13.27	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	IARS	P41252	1262 aa	Known RBP	13.27	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	CAPNS2	Q96L46	248 aa		13.27	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	GPR101	Q96P66	508 aa	Predicted RBP	13.27	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	SCN4A	P35499	1836 aa		13.26	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	CYP4F22	Q6NT55	531 aa		13.26	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	ADAMTSL1	Q8N6G6	1762 aa		13.26	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	JARID2	Q92833	1246 aa	Predicted RBP	13.26	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	RBM17	Q96I25	401 aa	Known RBP	13.26	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	BCL2L13	Q9BXK5	485 aa		13.26	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	CWC25	Q9NXE8	425 aa	Predicted RBP	13.26	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	HOXA10	P31260	410 aa	Predicted RBP	13.25	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	EPS15	P42566	896 aa		13.25	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	TRIM28	Q13263	835 aa	Known RBP	13.25	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	CWF19L2	Q2TBE0	894 aa	Known RBP	13.25	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	C3orf67	Q6ZVT6	689 aa		13.25	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	CCDC191	Q8NCU4	936 aa		13.25	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	DNAAF4	Q8WXU2	420 aa		13.25	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	CACNA1F	O60840	1977 aa		13.25	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	RIC1	Q4ADV7	1423 aa		13.24	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	SNED1	Q8TER0	1413 aa		13.24	□□□□□ -0.29
TRAPPC12-222	ENST00000493792		F6X3S4	739 aa		13.24	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	IRS4	O14654	1257 aa	Predicted RBP	13.24	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	ECE1	P42892	770 aa		13.24	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	SCNN1D	P51172	638 aa		13.24	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	SLC10A5	Q5PT55	438 aa		13.24	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.24	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	PSMD1	Q99460	953 aa		13.24	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	SMC4	Q9NTJ3	1288 aa		13.24	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	TSKS	Q9UJT2	592 aa		13.24	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	TRAF5	O00463	557 aa		13.23	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	PCCA	P05165	728 aa	Predicted RBP	13.23	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	IGKV5-2	P06315	115 aa		13.23	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	MAP2K2	P36507	400 aa		13.23	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	SLC4A10	Q6U841	1118 aa		13.23	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	DDX46	Q7L014	1031 aa	Known RBP	13.23	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	SSH1	Q8WYL5	1049 aa		13.23	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	TMX4	Q9H1E5	349 aa	Predicted RBP	13.23	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	TLL2	Q9Y6L7	1015 aa		13.23	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	NEURL1B	A8MQ27	555 aa		13.22	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	AOC2	O75106	756 aa		13.22	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	HSP90B1	P14625	803 aa	Known RBP	13.22	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	CC2D2B	Q6DHV5	1058 aa		13.22	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	TRMT2A	Q8IZ69	625 aa	Known RBP	13.22	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	MRPL50	Q8N5N7	158 aa	Known RBP	13.22	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	CRAMP1	Q96RY5	1269 aa		13.22	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	BEGAIN	Q9BUH8	593 aa		13.22	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	MCOLN1	Q9GZU1	580 aa		13.22	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	LAMB2	P55268	1798 aa		13.22	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	PPEF1	O14829	653 aa	Predicted RBP	13.21	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	GRIPAP1	Q4V328	841 aa		13.21	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	UBE3B	Q7Z3V4	1068 aa		13.21	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	SAPCD2	Q86UD0	394 aa		13.21	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	LINS1	Q8NG48	757 aa		13.21	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	JDP2	Q8WYK2	163 aa		13.21	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.21	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	GJA3	Q9Y6H8	435 aa		13.21	□□□□□ -0.29
TRAPPC12-222	ENST00000493792	DDX60	Q8IY21	1712 aa	Known RBP	13.21	□□□□□ -0.3
TRAPPC12-222	ENST00000493792	ABCC4	O15439	1325 aa		13.2	□□□□□ -0.3
TRAPPC12-222	ENST00000493792	PDE8A	O60658	829 aa		13.2	□□□□□ -0.3
TRAPPC12-222	ENST00000493792	GRM1	Q13255	1194 aa		13.2	□□□□□ -0.3
TRAPPC12-222	ENST00000493792	USP50	Q70EL3	339 aa	Predicted RBP	13.2	□□□□□ -0.3
TRAPPC12-222	ENST00000493792	SLC51A	Q86UW1	340 aa		13.2	□□□□□ -0.3

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