RNA–Protein interactions for RNA: ENST00000492275.5

TTC3-223, Transcript of tetratricopeptide repeat domain 3, human

TSL 3

Gene TTC3, Length 769 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-223	ENST00000492275	PPEF1	O14829	653 aa	Predicted RBP	32.72	■■■□□ 2.83
TTC3-223	ENST00000492275	COL4A1	P02462	1669 aa		32.72	■■■□□ 2.83
TTC3-223	ENST00000492275	BBOX1	O75936	387 aa		32.71	■■■□□ 2.83
TTC3-223	ENST00000492275	GRAP	Q13588	217 aa		32.71	■■■□□ 2.83
TTC3-223	ENST00000492275	CCDC93	Q567U6	631 aa		32.71	■■■□□ 2.83
TTC3-223	ENST00000492275	GRAPL	Q8TC17	118 aa	Predicted RBP	32.71	■■■□□ 2.83
TTC3-223	ENST00000492275	PLA2G12B	Q9BX93	195 aa		32.7	■■■□□ 2.83
TTC3-223	ENST00000492275	SNED1	Q8TER0	1413 aa		32.69	■■■□□ 2.82
TTC3-223	ENST00000492275	GRM8	O00222	908 aa		32.69	■■■□□ 2.82
TTC3-223	ENST00000492275	CTSW	P56202	376 aa		32.69	■■■□□ 2.82
TTC3-223	ENST00000492275	C9orf131	Q5VYM1	1079 aa		32.69	■■■□□ 2.82
TTC3-223	ENST00000492275	TTLL11	Q8NHH1	800 aa		32.69	■■■□□ 2.82
TTC3-223	ENST00000492275	CELF1	Q92879	486 aa	Known RBP	32.69	■■■□□ 2.82
TTC3-223	ENST00000492275	CCDC85A	Q96PX6	553 aa	Predicted RBP	32.69	■■■□□ 2.82
TTC3-223	ENST00000492275	CCDC152	Q4G0S7	254 aa		32.68	■■■□□ 2.82
TTC3-223	ENST00000492275	ARHGAP45	Q92619	1136 aa		32.68	■■■□□ 2.82
TTC3-223	ENST00000492275	SEC31B	Q9NQW1	1179 aa		32.68	■■■□□ 2.82
TTC3-223	ENST00000492275	ATP6V0A2	Q9Y487	856 aa		32.68	■■■□□ 2.82
TTC3-223	ENST00000492275	CC2D2B	Q6DHV5	1058 aa		32.67	■■■□□ 2.82
TTC3-223	ENST00000492275	RTKN2	Q8IZC4	609 aa		32.67	■■■□□ 2.82
TTC3-223	ENST00000492275	API5	Q9BZZ5	524 aa	Known RBP	32.67	■■■□□ 2.82
TTC3-223	ENST00000492275	KIF16B	Q96L93	1317 aa		32.67	■■■□□ 2.82
TTC3-223	ENST00000492275	LTBP3	Q9NS15	1303 aa		32.67	■■■□□ 2.82
TTC3-223	ENST00000492275	TAOK3	Q9H2K8	898 aa		32.66	■■■□□ 2.82
TTC3-223	ENST00000492275	C9orf78	Q9NZ63	289 aa	Predicted RBP	32.66	■■■□□ 2.82
TTC3-223	ENST00000492275	LMNB1	P20700	586 aa		32.65	■■■□□ 2.82
TTC3-223	ENST00000492275	SP8	Q8IXZ3	490 aa		32.65	■■■□□ 2.82
TTC3-223	ENST00000492275	RNF181	Q9P0P0	153 aa		32.65	■■■□□ 2.82
TTC3-223	ENST00000492275	DICER1	Q9UPY3	1922 aa	Known RBP	32.65	■■■□□ 2.82
TTC3-223	ENST00000492275	UTY	O14607	1347 aa		32.63	■■■□□ 2.81
TTC3-223	ENST00000492275	CSF1R	P07333	972 aa		32.63	■■■□□ 2.81
TTC3-223	ENST00000492275	RPS8	P62241	208 aa	Known RBP	32.63	■■■□□ 2.81
TTC3-223	ENST00000492275	FOXO4	P98177	505 aa		32.63	■■■□□ 2.81
TTC3-223	ENST00000492275	FKBP4	Q02790	459 aa	Known RBP eCLIP	32.63	■■■□□ 2.81
TTC3-223	ENST00000492275	GREM2	Q9H772	168 aa		32.63	■■■□□ 2.81
TTC3-223	ENST00000492275	NBPF7	P0C2Y1	421 aa	Predicted RBP	32.62	■■■□□ 2.81
TTC3-223	ENST00000492275	IPO8	O15397	1037 aa	Known RBP	32.61	■■■□□ 2.81
TTC3-223	ENST00000492275	EPHA10	Q5JZY3	1008 aa		32.61	■■■□□ 2.81
TTC3-223	ENST00000492275	FRAT1	Q92837	279 aa	Predicted RBP	32.61	■■■□□ 2.81
TTC3-223	ENST00000492275	LRRC37A	A6NMS7	1700 aa		32.6	■■■□□ 2.81
TTC3-223	ENST00000492275	RTL9	Q8NET4	1388 aa		32.6	■■■□□ 2.81
TTC3-223	ENST00000492275	CCT4	P50991	539 aa	Known RBP	32.6	■■■□□ 2.81
TTC3-223	ENST00000492275	GRIPAP1	Q4V328	841 aa		32.6	■■■□□ 2.81
TTC3-223	ENST00000492275	TMC4	Q7Z404	712 aa		32.6	■■■□□ 2.81
TTC3-223	ENST00000492275	USP44	Q9H0E7	712 aa		32.6	■■■□□ 2.81
TTC3-223	ENST00000492275	TNN	Q9UQP3	1299 aa		32.6	■■■□□ 2.81
TTC3-223	ENST00000492275	TRIM27	P14373	513 aa		32.59	■■■□□ 2.81
TTC3-223	ENST00000492275	ZNF784	Q8NCA9	323 aa	Predicted RBP	32.59	■■■□□ 2.81
TTC3-223	ENST00000492275	KAZALD1	Q96I82	304 aa		32.59	■■■□□ 2.81
TTC3-223	ENST00000492275	PSMD1	Q99460	953 aa		32.59	■■■□□ 2.81
TTC3-223	ENST00000492275	ATF7IP	Q6VMQ6	1270 aa		32.58	■■■□□ 2.81
TTC3-223	ENST00000492275	SUCLG2	Q96I99	432 aa		32.58	■■■□□ 2.81
TTC3-223	ENST00000492275	TMX4	Q9H1E5	349 aa	Predicted RBP	32.58	■■■□□ 2.81
TTC3-223	ENST00000492275	ZNF277	Q9NRM2	450 aa	Predicted RBP	32.58	■■■□□ 2.81
TTC3-223	ENST00000492275	SPEF2	Q9C093	1822 aa		32.56	■■■□□ 2.8
TTC3-223	ENST00000492275	FAM161A	Q3B820	660 aa		32.56	■■■□□ 2.8
TTC3-223	ENST00000492275	YTHDC1	Q96MU7	727 aa	Known RBP	32.56	■■■□□ 2.8
TTC3-223	ENST00000492275	ANKRD18A	Q8IVF6	992 aa		32.55	■■■□□ 2.8
TTC3-223	ENST00000492275	TIAM2	Q8IVF5	1701 aa		32.54	■■■□□ 2.8
TTC3-223	ENST00000492275	ITGA6	P23229	1130 aa		32.54	■■■□□ 2.8
TTC3-223	ENST00000492275	ZKSCAN2	Q63HK3	967 aa		32.54	■■■□□ 2.8
TTC3-223	ENST00000492275	INTS3	Q68E01	1043 aa	Known RBP	32.54	■■■□□ 2.8
TTC3-223	ENST00000492275	LMBR1L	Q6UX01	489 aa		32.54	■■■□□ 2.8
TTC3-223	ENST00000492275	MPND	Q8N594	471 aa		32.54	■■■□□ 2.8
TTC3-223	ENST00000492275	CDC5L	Q99459	802 aa	Known RBP	32.54	■■■□□ 2.8
TTC3-223	ENST00000492275	RTFDC1	Q9BY42	306 aa	Predicted RBP	32.53	■■■□□ 2.8
TTC3-223	ENST00000492275	IARS	P41252	1262 aa	Known RBP	32.52	■■■□□ 2.8
TTC3-223	ENST00000492275	DPP8	Q6V1X1	898 aa	Predicted RBP	32.52	■■■□□ 2.8
TTC3-223	ENST00000492275	GPSM2	P81274	684 aa		32.51	■■■□□ 2.79
TTC3-223	ENST00000492275	CLUAP1	Q96AJ1	413 aa		32.51	■■■□□ 2.79
TTC3-223	ENST00000492275	LTBP1	Q14766	1721 aa		32.5	■■■□□ 2.79
TTC3-223	ENST00000492275	ZC3H4	Q9UPT8	1303 aa	Known RBP	32.5	■■■□□ 2.79
TTC3-223	ENST00000492275	DUOX1	Q9NRD9	1551 aa		32.49	■■■□□ 2.79
TTC3-223	ENST00000492275	BICC1	Q9H694	974 aa	Known RBP	32.49	■■■□□ 2.79
TTC3-223	ENST00000492275	BSDC1	Q9NW68	430 aa	Predicted RBP	32.49	■■■□□ 2.79
TTC3-223	ENST00000492275	NSFL1C	Q9UNZ2	370 aa	Known RBP	32.49	■■■□□ 2.79
TTC3-223	ENST00000492275	CHMP3	Q9Y3E7	222 aa		32.49	■■■□□ 2.79
TTC3-223	ENST00000492275	ANKRD18B	A2A2Z9	1011 aa		32.48	■■■□□ 2.79
TTC3-223	ENST00000492275	ANKRD44	Q8N8A2	993 aa		32.48	■■■□□ 2.79
TTC3-223	ENST00000492275	ZNF526	Q8TF50	670 aa	Predicted RBP	32.48	■■■□□ 2.79
TTC3-223	ENST00000492275	RCAN3	Q9UKA8	241 aa		32.48	■■■□□ 2.79
TTC3-223	ENST00000492275	COL4A5	P29400	1685 aa		32.47	■■■□□ 2.79
TTC3-223	ENST00000492275	IFIT5	Q13325	482 aa	Known RBP	32.47	■■■□□ 2.79
TTC3-223	ENST00000492275	RABL6	Q3YEC7	729 aa	Predicted RBP	32.47	■■■□□ 2.79
TTC3-223	ENST00000492275	IGHMBP2	P38935	993 aa	Known RBP	32.46	■■■□□ 2.79
TTC3-223	ENST00000492275	SUPT20H	Q8NEM7	779 aa		32.46	■■■□□ 2.79
TTC3-223	ENST00000492275	TMEM57	Q8N5G2	664 aa		32.45	■■■□□ 2.79
TTC3-223	ENST00000492275	MEIS3	Q99687	375 aa		32.45	■■■□□ 2.79
TTC3-223	ENST00000492275	PODXL2	Q9NZ53	605 aa		32.45	■■■□□ 2.79
TTC3-223	ENST00000492275	POLL	Q9UGP5	575 aa		32.45	■■■□□ 2.79
TTC3-223	ENST00000492275	MINPP1	Q9UNW1	487 aa		32.45	■■■□□ 2.79
TTC3-223	ENST00000492275	VPS33B	Q9H267	617 aa		32.44	■■■□□ 2.78
TTC3-223	ENST00000492275	UBTFL1	P0CB47	393 aa	Predicted RBP	32.43	■■■□□ 2.78
TTC3-223	ENST00000492275	AOC3	Q16853	763 aa		32.43	■■■□□ 2.78
TTC3-223	ENST00000492275	CCDC57	Q2TAC2	916 aa		32.43	■■■□□ 2.78
TTC3-223	ENST00000492275	LARGE2	Q8N3Y3	721 aa		32.43	■■■□□ 2.78
TTC3-223	ENST00000492275	PPIP5K2	O43314	1243 aa		32.42	■■■□□ 2.78
TTC3-223	ENST00000492275	RLBP1	P12271	317 aa		32.42	■■■□□ 2.78
TTC3-223	ENST00000492275	TBC1D16	Q8TBP0	767 aa		32.42	■■■□□ 2.78
TTC3-223	ENST00000492275	ZNF594	Q96JF6	807 aa	Predicted RBP	32.42	■■■□□ 2.78

Retrieved 100 of 20,778 RNA–protein pairs in 55 ms