RNA–Protein interactions for RNA: ENST00000491165.5

USF3-203, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USF3, Length 2,133 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-203ENST00000491165 FOXO4P98177 505 aa28■■■□□ 2.07
USF3-203ENST00000491165 LAMB2P55268 1798 aa28■■■□□ 2.07
USF3-203ENST00000491165 ABCC12Q96J65 1359 aa28■■■□□ 2.07
USF3-203ENST00000491165 SH3TC1Q8TE82 1336 aa28■■■□□ 2.07
USF3-203ENST00000491165 ERFEQ4G0M1 354 aa28■■■□□ 2.07
USF3-203ENST00000491165 CDHR2Q9BYE9 1310 aa27.99■■■□□ 2.07
USF3-203ENST00000491165 POLRMTO00411 1230 aaKnown RBP27.99■■■□□ 2.07
USF3-203ENST00000491165 IRS4O14654 1257 aaPredicted RBP27.99■■■□□ 2.07
USF3-203ENST00000491165 HCLS1P14317 486 aaPredicted RBP27.99■■■□□ 2.07
USF3-203ENST00000491165 NBPF5PQ86XG9 351 aaPredicted RBP27.98■■■□□ 2.07
USF3-203ENST00000491165 NLGN1Q8N2Q7 840 aa27.98■■■□□ 2.07
USF3-203ENST00000491165 PSDA5PKW4 1024 aaPredicted RBP27.97■■■□□ 2.07
USF3-203ENST00000491165 NRXN2Q9P2S2 1712 aa27.97■■■□□ 2.07
USF3-203ENST00000491165 TNRC6CQ9HCJ0 1690 aaKnown RBP27.96■■■□□ 2.07
USF3-203ENST00000491165 MMP10P09238 476 aa27.96■■■□□ 2.07
USF3-203ENST00000491165 RABL6Q3YEC7 729 aaPredicted RBP27.96■■■□□ 2.07
USF3-203ENST00000491165 SERPINB2P05120 415 aa27.95■■■□□ 2.07
USF3-203ENST00000491165 CHD1LQ86WJ1 897 aa27.95■■■□□ 2.07
USF3-203ENST00000491165 RPAP2Q8IXW5 612 aaPredicted RBP27.95■■■□□ 2.07
USF3-203ENST00000491165 ATP8B2P98198 1209 aa27.95■■■□□ 2.06
USF3-203ENST00000491165 LMBR1LQ6UX01 489 aa27.95■■■□□ 2.06
USF3-203ENST00000491165 C3orf67Q6ZVT6 689 aa27.95■■■□□ 2.06
USF3-203ENST00000491165 CCDC85AQ96PX6 553 aaPredicted RBP27.95■■■□□ 2.06
USF3-203ENST00000491165 PLA2G12BQ9BX93 195 aa27.95■■■□□ 2.06
USF3-203ENST00000491165 MTX1Q13505 466 aa27.94■■■□□ 2.06
USF3-203ENST00000491165 PRR5LQ6MZQ0 368 aa27.94■■■□□ 2.06
USF3-203ENST00000491165 LNPKQ9C0E8 428 aa27.94■■■□□ 2.06
USF3-203ENST00000491165 TPTE2Q6XPS3 522 aa27.94■■■□□ 2.06
USF3-203ENST00000491165 SRGAP3O43295 1099 aa27.93■■■□□ 2.06
USF3-203ENST00000491165 NYXQ9GZU5 481 aa27.93■■■□□ 2.06
USF3-203ENST00000491165 CNBD1Q8NA66 436 aa27.92■■■□□ 2.06
USF3-203ENST00000491165 COL4A1P02462 1669 aa27.91■■■□□ 2.06
USF3-203ENST00000491165 ZBTB7AO95365 584 aa27.91■■■□□ 2.06
USF3-203ENST00000491165 GTF2E1P29083 439 aaPredicted RBP27.91■■■□□ 2.06
USF3-203ENST00000491165 SPRYD3Q8NCJ5 442 aa27.91■■■□□ 2.06
USF3-203ENST00000491165 TTLL11Q8NHH1 800 aa27.91■■■□□ 2.06
USF3-203ENST00000491165 SSH3Q8TE77 659 aa27.91■■■□□ 2.06
USF3-203ENST00000491165 TAF1P21675 1872 aa27.91■■■□□ 2.06
USF3-203ENST00000491165 ANKRD31Q8N7Z5 1873 aa27.91■■■□□ 2.06
USF3-203ENST00000491165 PDE8AO60658 829 aa27.91■■■□□ 2.06
USF3-203ENST00000491165 CTSWP56202 376 aa27.91■■■□□ 2.06
USF3-203ENST00000491165 POLA2Q14181 598 aa27.91■■■□□ 2.06
USF3-203ENST00000491165 KLHDC4Q8TBB5 520 aa27.91■■■□□ 2.06
USF3-203ENST00000491165 GCC1Q96CN9 775 aa27.91■■■□□ 2.06
USF3-203ENST00000491165 HSCBQ8IWL3 235 aa27.9■■■□□ 2.06
USF3-203ENST00000491165 CHMP5Q9NZZ3 219 aa27.9■■■□□ 2.06
USF3-203ENST00000491165 CSF1RP07333 972 aa27.89■■■□□ 2.06
USF3-203ENST00000491165 HDAC5Q9UQL6 1122 aa27.89■■■□□ 2.06
USF3-203ENST00000491165 SLC10A5Q5PT55 438 aa27.89■■■□□ 2.05
USF3-203ENST00000491165 CHMP3Q9Y3E7 222 aa27.89■■■□□ 2.05
USF3-203ENST00000491165 RBM25P49756 843 aaKnown RBP27.88■■■□□ 2.05
USF3-203ENST00000491165 BMP2KLQ5H9B9 411 aa27.88■■■□□ 2.05
USF3-203ENST00000491165 GREM2Q9H772 168 aa27.88■■■□□ 2.05
USF3-203ENST00000491165 PA2G4Q9UQ80 394 aaKnown RBP27.88■■■□□ 2.05
USF3-203ENST00000491165 NPHP1O15259 732 aa27.88■■■□□ 2.05
USF3-203ENST00000491165 RFX5P48382 616 aaPredicted RBP27.88■■■□□ 2.05
USF3-203ENST00000491165 SLC16A10Q8TF71 515 aa27.88■■■□□ 2.05
USF3-203ENST00000491165 UTRNP46939 3433 aa27.88■■■□□ 2.05
USF3-203ENST00000491165 PARP3Q9Y6F1 533 aa27.86■■■□□ 2.05
USF3-203ENST00000491165 MCM4P33991 863 aa27.85■■■□□ 2.05
USF3-203ENST00000491165 ANKRD45Q5TZF3 282 aa27.85■■■□□ 2.05
USF3-203ENST00000491165 ATF5Q9Y2D1 282 aaPredicted RBP27.85■■■□□ 2.05
USF3-203ENST00000491165 EXOC6BQ9Y2D4 811 aa27.85■■■□□ 2.05
USF3-203ENST00000491165 PTPN12Q05209 780 aaKnown RBP27.84■■■□□ 2.05
USF3-203ENST00000491165 ZNF594Q96JF6 807 aaPredicted RBP27.84■■■□□ 2.05
USF3-203ENST00000491165 L1TD1Q5T7N2 865 aaKnown RBP27.83■■■□□ 2.05
USF3-203ENST00000491165 DCTPP1Q9H773 170 aa27.83■■■□□ 2.05
USF3-203ENST00000491165 SEC31BQ9NQW1 1179 aa27.83■■■□□ 2.05
USF3-203ENST00000491165 HMMRO75330 724 aa27.83■■■□□ 2.05
USF3-203ENST00000491165 ITGA6P23229 1130 aa27.82■■■□□ 2.04
USF3-203ENST00000491165 SPEF2Q9C093 1822 aa27.82■■■□□ 2.04
USF3-203ENST00000491165 ST5P78524 1137 aa27.82■■■□□ 2.04
USF3-203ENST00000491165 SNX21Q969T3 373 aa27.82■■■□□ 2.04
USF3-203ENST00000491165 MTFR1LQ9H019 292 aa27.82■■■□□ 2.04
USF3-203ENST00000491165 SF3B3Q15393 1217 aaKnown RBP27.81■■■□□ 2.04
USF3-203ENST00000491165 NLRP3Q96P20 1036 aa27.81■■■□□ 2.04
USF3-203ENST00000491165 SIL1Q9H173 461 aa27.81■■■□□ 2.04
USF3-203ENST00000491165 RIC1Q4ADV7 1423 aa27.8■■■□□ 2.04
USF3-203ENST00000491165 COL11A2P13942 1736 aaPredicted RBP27.8■■■□□ 2.04
USF3-203ENST00000491165 APBB1O00213 710 aa27.79■■■□□ 2.04
USF3-203ENST00000491165 SURF6O75683 361 aaKnown RBP27.79■■■□□ 2.04
USF3-203ENST00000491165 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP27.79■■■□□ 2.04
USF3-203ENST00000491165 IFIT5Q13325 482 aaKnown RBP27.78■■■□□ 2.04
USF3-203ENST00000491165 CCDC57Q2TAC2 916 aa27.78■■■□□ 2.04
USF3-203ENST00000491165 CCDC152Q4G0S7 254 aa27.78■■■□□ 2.04
USF3-203ENST00000491165 COPRSQ9NQ92 184 aa27.78■■■□□ 2.04
USF3-203ENST00000491165 SGIP1Q9BQI5 828 aa27.77■■■□□ 2.04
USF3-203ENST00000491165 HSP90B1P14625 803 aaKnown RBP27.77■■■□□ 2.04
USF3-203ENST00000491165 PUS3Q9BZE2 481 aaKnown RBP27.77■■■□□ 2.04
USF3-203ENST00000491165 CRY2Q49AN0 593 aa27.76■■■□□ 2.03
USF3-203ENST00000491165 RTL9Q8NET4 1388 aa27.76■■■□□ 2.03
USF3-203ENST00000491165 LRRC24Q50LG9 513 aa27.76■■■□□ 2.03
USF3-203ENST00000491165 LRP5O75197 1615 aa27.75■■■□□ 2.03
USF3-203ENST00000491165 KLRG2A4D1S0 409 aaPredicted RBP27.75■■■□□ 2.03
USF3-203ENST00000491165 BRIP1Q9BX63 1249 aa27.75■■■□□ 2.03
USF3-203ENST00000491165 SLC51AQ86UW1 340 aa27.74■■■□□ 2.03
USF3-203ENST00000491165 ANKRD18BA2A2Z9 1011 aa27.74■■■□□ 2.03
USF3-203ENST00000491165 PTGER2P43116 358 aa27.74■■■□□ 2.03
USF3-203ENST00000491165 CELF1Q92879 486 aaKnown RBP27.74■■■□□ 2.03
USF3-203ENST00000491165 SMARCA5O60264 1052 aaPredicted RBP27.73■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms