RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 USP48Q86UV5 1035 aa21.47■■□□□ 1.03
USP48-210ENST00000489108 CNOT7Q9UIV1 285 aaKnown RBP21.47■■□□□ 1.03
USP48-210ENST00000489108 ABCC4O15439 1325 aa21.47■■□□□ 1.03
USP48-210ENST00000489108 SHTN1A0MZ66 631 aa21.46■■□□□ 1.03
USP48-210ENST00000489108 NOGQ13253 232 aa21.46■■□□□ 1.03
USP48-210ENST00000489108 TNIP1Q15025 636 aa21.46■■□□□ 1.03
USP48-210ENST00000489108 PARP10Q53GL7 1025 aa21.46■■□□□ 1.03
USP48-210ENST00000489108 SP8Q8IXZ3 490 aa21.46■■□□□ 1.03
USP48-210ENST00000489108 MPNDQ8N594 471 aa21.46■■□□□ 1.03
USP48-210ENST00000489108 KDM3BQ7LBC6 1761 aa21.46■■□□□ 1.03
USP48-210ENST00000489108 BBOX1O75936 387 aa21.45■■□□□ 1.02
USP48-210ENST00000489108 HUNKP57058 714 aa21.45■■□□□ 1.02
USP48-210ENST00000489108 KIAA2012Q0VF49 1180 aa21.45■■□□□ 1.02
USP48-210ENST00000489108 UTP14AQ9BVJ6 771 aaKnown RBP21.45■■□□□ 1.02
USP48-210ENST00000489108 CDHR2Q9BYE9 1310 aa21.45■■□□□ 1.02
USP48-210ENST00000489108 THUMPD2Q9BTF0 503 aaKnown RBP21.44■■□□□ 1.02
USP48-210ENST00000489108 DLG5Q8TDM6 1919 aa21.44■■□□□ 1.02
USP48-210ENST00000489108 YDJCA8MPS7 323 aa21.43■■□□□ 1.02
USP48-210ENST00000489108 H7C1D1 291 aa21.43■■□□□ 1.02
USP48-210ENST00000489108 PDE4DIPQ5VU43 2346 aa21.42■■□□□ 1.02
USP48-210ENST00000489108 POLR2AP24928 1970 aaKnown RBP21.41■■□□□ 1.02
USP48-210ENST00000489108 HCLS1P14317 486 aaPredicted RBP21.41■■□□□ 1.02
USP48-210ENST00000489108 MICALL2Q8IY33 904 aa21.41■■□□□ 1.02
USP48-210ENST00000489108 ZBTB12Q9Y330 459 aaPredicted RBP21.41■■□□□ 1.02
USP48-210ENST00000489108 FAM155AB1AL88 458 aaPredicted RBP21.4■■□□□ 1.02
USP48-210ENST00000489108 RGMBQ6NW40 437 aa21.4■■□□□ 1.02
USP48-210ENST00000489108 SAMD7Q7Z3H4 446 aa21.4■■□□□ 1.02
USP48-210ENST00000489108 LRP10Q7Z4F1 713 aa21.4■■□□□ 1.02
USP48-210ENST00000489108 TAF1P21675 1872 aa21.39■■□□□ 1.02
USP48-210ENST00000489108 LAMB2P55268 1798 aa21.39■■□□□ 1.01
USP48-210ENST00000489108 ERBB4Q15303 1308 aa21.39■■□□□ 1.01
USP48-210ENST00000489108 SOX10P56693 466 aa21.39■■□□□ 1.01
USP48-210ENST00000489108 PDIA6Q15084 440 aa21.39■■□□□ 1.01
USP48-210ENST00000489108 DDX46Q7L014 1031 aaKnown RBP21.39■■□□□ 1.01
USP48-210ENST00000489108 ANXA1P04083 346 aa21.38■■□□□ 1.01
USP48-210ENST00000489108 NEFMP07197 916 aa21.38■■□□□ 1.01
USP48-210ENST00000489108 EIF2S2P20042 333 aaKnown RBP21.38■■□□□ 1.01
USP48-210ENST00000489108 KIF23Q02241 960 aaPredicted RBP21.38■■□□□ 1.01
USP48-210ENST00000489108 GRAPQ13588 217 aa21.37■■□□□ 1.01
USP48-210ENST00000489108 PROSER3Q2NL68 480 aa21.37■■□□□ 1.01
USP48-210ENST00000489108 TBC1D10BQ4KMP7 808 aaPredicted RBP21.37■■□□□ 1.01
USP48-210ENST00000489108 KRT26Q7Z3Y9 468 aa21.37■■□□□ 1.01
USP48-210ENST00000489108 C2orf69Q8N8R5 385 aa21.37■■□□□ 1.01
USP48-210ENST00000489108 GRAPLQ8TC17 118 aaPredicted RBP21.37■■□□□ 1.01
USP48-210ENST00000489108 DPF2Q92785 391 aa21.37■■□□□ 1.01
USP48-210ENST00000489108 GBA2Q9HCG7 927 aaPredicted RBP21.37■■□□□ 1.01
USP48-210ENST00000489108 ANKRD36CQ5JPF3 1778 aa21.37■■□□□ 1.01
USP48-210ENST00000489108 PSMD14O00487 310 aa21.36■■□□□ 1.01
USP48-210ENST00000489108 TRPA1O75762 1119 aa21.36■■□□□ 1.01
USP48-210ENST00000489108 EGFRP00533 1210 aa21.36■■□□□ 1.01
USP48-210ENST00000489108 RBM26Q5T8P6 1007 aaKnown RBP21.36■■□□□ 1.01
USP48-210ENST00000489108 NLRP10Q86W26 655 aa21.36■■□□□ 1.01
USP48-210ENST00000489108 CCDC102AQ96A19 550 aa21.36■■□□□ 1.01
USP48-210ENST00000489108 PLEKHF1Q96S99 279 aa21.36■■□□□ 1.01
USP48-210ENST00000489108 RNF186Q9NXI6 227 aa21.36■■□□□ 1.01
USP48-210ENST00000489108 SAGE1Q9NXZ1 904 aa21.36■■□□□ 1.01
USP48-210ENST00000489108 ZNF157P51786 506 aaPredicted RBP21.35■■□□□ 1.01
USP48-210ENST00000489108 NFE2L2Q16236 605 aa21.35■■□□□ 1.01
USP48-210ENST00000489108 TRMT112Q9UI30 125 aaKnown RBP21.35■■□□□ 1.01
USP48-210ENST00000489108 ADM5C9JUS6 153 aa21.34■■□□□ 1.01
USP48-210ENST00000489108 DBNDD1Q9H9R9 158 aa21.34■■□□□ 1.01
USP48-210ENST00000489108 AKAP11Q9UKA4 1901 aa21.33■■□□□ 1.01
USP48-210ENST00000489108 RIMBP2O15034 1052 aa21.33■■□□□ 1.01
USP48-210ENST00000489108 AIMP1Q12904 312 aaKnown RBP21.33■■□□□ 1.01
USP48-210ENST00000489108 WASHC4Q2M389 1173 aa21.33■■□□□ 1.01
USP48-210ENST00000489108 COPS6Q7L5N1 327 aa21.33■■□□□ 1.01
USP48-210ENST00000489108 ZNF428Q96B54 188 aa21.33■■□□□ 1.01
USP48-210ENST00000489108 DCPSQ96C86 337 aaKnown RBP21.33■■□□□ 1.01
USP48-210ENST00000489108 KCNQ5Q9NR82 932 aa21.33■■□□□ 1.01
USP48-210ENST00000489108 TSPYL4Q9UJ04 414 aa21.33■■□□□ 1.01
USP48-210ENST00000489108 DUOX1Q9NRD9 1551 aa21.32■■□□□ 1
USP48-210ENST00000489108 TCIRG1Q13488 830 aa21.32■■□□□ 1
USP48-210ENST00000489108 HSP90AB3PQ58FF7 597 aa21.32■■□□□ 1
USP48-210ENST00000489108 CSRNP1Q96S65 589 aa21.32■■□□□ 1
USP48-210ENST00000489108 NSFL1CQ9UNZ2 370 aaKnown RBP21.32■■□□□ 1
USP48-210ENST00000489108 SH3TC1Q8TE82 1336 aa21.31■■□□□ 1
USP48-210ENST00000489108 TMC4Q7Z404 712 aa21.31■■□□□ 1
USP48-210ENST00000489108 XAGE3Q8WTP9 111 aa21.31■■□□□ 1
USP48-210ENST00000489108 NECTIN2Q92692 538 aa21.31■■□□□ 1
USP48-210ENST00000489108 POLLQ9UGP5 575 aa21.3■■□□□ 1
USP48-210ENST00000489108 C6orf229H3BNL8 230 aa21.29■■□□□ 1
USP48-210ENST00000489108 RPS12P25398 132 aaKnown RBP21.29■■□□□ 1
USP48-210ENST00000489108 DOK7Q18PE1 504 aa21.29■■□□□ 1
USP48-210ENST00000489108 SLC10A3P09131 477 aa21.28■■□□□ 1
USP48-210ENST00000489108 CTU1Q7Z7A3 348 aaKnown RBP21.28■■□□□ 1
USP48-210ENST00000489108 CELF1Q92879 486 aaKnown RBP21.28■■□□□ 1
USP48-210ENST00000489108 LRRC37AA6NMS7 1700 aa21.27■■□□□ 1
USP48-210ENST00000489108 RTL9Q8NET4 1388 aa21.27■■□□□ 1
USP48-210ENST00000489108 ECE2O60344 883 aa21.27■■□□□ 1
USP48-210ENST00000489108 GPSM2P81274 684 aa21.27■■□□□ 1
USP48-210ENST00000489108 ASTN2O75129 1339 aaPredicted RBP21.27■□□□□ 0.99
USP48-210ENST00000489108 KIF4BQ2VIQ3 1234 aa21.26■□□□□ 0.99
USP48-210ENST00000489108 PRPF38BQ5VTL8 546 aaKnown RBP21.26■□□□□ 0.99
USP48-210ENST00000489108 SULF1Q8IWU6 871 aa21.26■□□□□ 0.99
USP48-210ENST00000489108 MAPK8IP3Q9UPT6 1336 aa21.26■□□□□ 0.99
USP48-210ENST00000489108 CDCA5Q96FF9 252 aa21.25■□□□□ 0.99
USP48-210ENST00000489108 GGA3Q9NZ52 723 aa21.25■□□□□ 0.99
USP48-210ENST00000489108 SF3B3Q15393 1217 aaKnown RBP21.24■□□□□ 0.99
USP48-210ENST00000489108 FAM89AQ96GI7 184 aa21.24■□□□□ 0.99
USP48-210ENST00000489108 PNNQ9H307 717 aaKnown RBP21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms