RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 C16orf71Q8IYS4 520 aaPredicted RBP17.52■□□□□ 0.39
CUX1-209ENST00000487284 NOP58Q9Y2X3 529 aaKnown RBP17.52■□□□□ 0.39
CUX1-209ENST00000487284 SALL3Q9BXA9 1300 aa17.51■□□□□ 0.39
CUX1-209ENST00000487284 OTUD7AQ8TE49 926 aaPredicted RBP17.51■□□□□ 0.39
CUX1-209ENST00000487284 NYXQ9GZU5 481 aa17.51■□□□□ 0.39
CUX1-209ENST00000487284 ABCC12Q96J65 1359 aa17.51■□□□□ 0.39
CUX1-209ENST00000487284 POLRMTO00411 1230 aaKnown RBP17.5■□□□□ 0.39
CUX1-209ENST00000487284 SURF6O75683 361 aaKnown RBP17.5■□□□□ 0.39
CUX1-209ENST00000487284 HCLS1P14317 486 aaPredicted RBP17.5■□□□□ 0.39
CUX1-209ENST00000487284 FOXO4P98177 505 aa17.5■□□□□ 0.39
CUX1-209ENST00000487284 ERFEQ4G0M1 354 aa17.5■□□□□ 0.39
CUX1-209ENST00000487284 HSP90AB4PQ58FF6 505 aa17.5■□□□□ 0.39
CUX1-209ENST00000487284 OSBPL3Q9H4L5 887 aa17.5■□□□□ 0.39
CUX1-209ENST00000487284 NRXN2Q9P2S2 1712 aa17.5■□□□□ 0.39
CUX1-209ENST00000487284 GTF2E1P29083 439 aaPredicted RBP17.49■□□□□ 0.39
CUX1-209ENST00000487284 RABL6Q3YEC7 729 aaPredicted RBP17.49■□□□□ 0.39
CUX1-209ENST00000487284 TTC22Q5TAA0 569 aa17.49■□□□□ 0.39
CUX1-209ENST00000487284 TPTE2Q6XPS3 522 aa17.49■□□□□ 0.39
CUX1-209ENST00000487284 CCDC24Q8N4L8 307 aa17.49■□□□□ 0.39
CUX1-209ENST00000487284 PLA2G12BQ9BX93 195 aa17.49■□□□□ 0.39
CUX1-209ENST00000487284 SEC24BO95487 1268 aa17.49■□□□□ 0.39
CUX1-209ENST00000487284 SERPINB2P05120 415 aa17.49■□□□□ 0.39
CUX1-209ENST00000487284 MMP10P09238 476 aa17.49■□□□□ 0.39
CUX1-209ENST00000487284 GSPT1P15170 499 aaKnown RBP17.49■□□□□ 0.39
CUX1-209ENST00000487284 TNRC6CQ9HCJ0 1690 aaKnown RBP17.48■□□□□ 0.39
CUX1-209ENST00000487284 PSDA5PKW4 1024 aaPredicted RBP17.48■□□□□ 0.39
CUX1-209ENST00000487284 PRR5LQ6MZQ0 368 aa17.48■□□□□ 0.39
CUX1-209ENST00000487284 LMBR1LQ6UX01 489 aa17.48■□□□□ 0.39
CUX1-209ENST00000487284 CNBD1Q8NA66 436 aa17.48■□□□□ 0.39
CUX1-209ENST00000487284 SLC16A10Q8TF71 515 aa17.48■□□□□ 0.39
CUX1-209ENST00000487284 KIF1BPQ96EK5 621 aa17.48■□□□□ 0.39
CUX1-209ENST00000487284 NPHP1O15259 732 aa17.47■□□□□ 0.39
CUX1-209ENST00000487284 PDE8AO60658 829 aa17.47■□□□□ 0.39
CUX1-209ENST00000487284 PDE1AP54750 535 aa17.47■□□□□ 0.39
CUX1-209ENST00000487284 RHPN1Q8TCX5 695 aa17.47■□□□□ 0.39
CUX1-209ENST00000487284 CTSWP56202 376 aa17.46■□□□□ 0.39
CUX1-209ENST00000487284 CCDC85AQ96PX6 553 aaPredicted RBP17.46■□□□□ 0.39
CUX1-209ENST00000487284 CHMP3Q9Y3E7 222 aa17.46■□□□□ 0.39
CUX1-209ENST00000487284 PARP3Q9Y6F1 533 aa17.46■□□□□ 0.39
CUX1-209ENST00000487284 AOX1Q06278 1338 aa17.46■□□□□ 0.39
CUX1-209ENST00000487284 SLC10A5Q5PT55 438 aa17.45■□□□□ 0.38
CUX1-209ENST00000487284 C3orf67Q6ZVT6 689 aa17.45■□□□□ 0.38
CUX1-209ENST00000487284 ERC1Q8IUD2 1116 aa17.45■□□□□ 0.38
CUX1-209ENST00000487284 TTLL11Q8NHH1 800 aa17.45■□□□□ 0.38
CUX1-209ENST00000487284 STAP2Q9UGK3 403 aa17.45■□□□□ 0.38
CUX1-209ENST00000487284 ZBTB7AO95365 584 aa17.45■□□□□ 0.38
CUX1-209ENST00000487284 CSF1RP07333 972 aa17.45■□□□□ 0.38
CUX1-209ENST00000487284 HSP90B1P14625 803 aaKnown RBP17.45■□□□□ 0.38
CUX1-209ENST00000487284 MX1P20591 662 aa17.45■□□□□ 0.38
CUX1-209ENST00000487284 ANKRD31Q8N7Z5 1873 aa17.44■□□□□ 0.38
CUX1-209ENST00000487284 ST5P78524 1137 aa17.44■□□□□ 0.38
CUX1-209ENST00000487284 GREM2Q9H772 168 aa17.44■□□□□ 0.38
CUX1-209ENST00000487284 IL1RAPL2Q9NP60 686 aa17.44■□□□□ 0.38
CUX1-209ENST00000487284 PA2G4Q9UQ80 394 aaKnown RBP17.44■□□□□ 0.38
CUX1-209ENST00000487284 RIC1Q4ADV7 1423 aa17.43■□□□□ 0.38
CUX1-209ENST00000487284 CDC45O75419 566 aa17.43■□□□□ 0.38
CUX1-209ENST00000487284 RFX5P48382 616 aaPredicted RBP17.43■□□□□ 0.38
CUX1-209ENST00000487284 IPO9Q96P70 1041 aaKnown RBP17.43■□□□□ 0.38
CUX1-209ENST00000487284 BCL11AQ9H165 835 aa17.43■□□□□ 0.38
CUX1-209ENST00000487284 UPF2Q9HAU5 1272 aaKnown RBP17.43■□□□□ 0.38
CUX1-209ENST00000487284 OS9Q13438 667 aaPredicted RBP17.42■□□□□ 0.38
CUX1-209ENST00000487284 KLHDC4Q8TBB5 520 aa17.42■□□□□ 0.38
CUX1-209ENST00000487284 MTFR1LQ9H019 292 aa17.42■□□□□ 0.38
CUX1-209ENST00000487284 COPRSQ9NQ92 184 aa17.42■□□□□ 0.38
CUX1-209ENST00000487284 TBC1D9Q6ZT07 1266 aa17.41■□□□□ 0.38
CUX1-209ENST00000487284 NLRP3Q96P20 1036 aa17.41■□□□□ 0.38
CUX1-209ENST00000487284 ATF5Q9Y2D1 282 aaPredicted RBP17.41■□□□□ 0.38
CUX1-209ENST00000487284 TAF1P21675 1872 aa17.41■□□□□ 0.38
CUX1-209ENST00000487284 SDSP20132 328 aa17.4■□□□□ 0.38
CUX1-209ENST00000487284 PTPN12Q05209 780 aaKnown RBP17.4■□□□□ 0.38
CUX1-209ENST00000487284 SF3B3Q15393 1217 aaKnown RBP17.4■□□□□ 0.38
CUX1-209ENST00000487284 CCDC152Q4G0S7 254 aa17.4■□□□□ 0.38
CUX1-209ENST00000487284 TBC1D32Q96NH3 1257 aa17.4■□□□□ 0.38
CUX1-209ENST00000487284 COL4A1P02462 1669 aa17.4■□□□□ 0.38
CUX1-209ENST00000487284 SASH1O94885 1247 aa17.4■□□□□ 0.38
CUX1-209ENST00000487284 ITGA6P23229 1130 aa17.4■□□□□ 0.38
CUX1-209ENST00000487284 G3BP1Q13283 466 aaKnown RBP eCLIP17.4■□□□□ 0.38
CUX1-209ENST00000487284 CCDC57Q2TAC2 916 aa17.4■□□□□ 0.38
CUX1-209ENST00000487284 ZNF594Q96JF6 807 aaPredicted RBP17.4■□□□□ 0.38
CUX1-209ENST00000487284 SPEF2Q9C093 1822 aa17.4■□□□□ 0.38
CUX1-209ENST00000487284 RTL9Q8NET4 1388 aa17.39■□□□□ 0.37
CUX1-209ENST00000487284 IFIT5Q13325 482 aaKnown RBP17.39■□□□□ 0.37
CUX1-209ENST00000487284 CLASRPQ8N2M8 674 aaKnown RBP17.39■□□□□ 0.37
CUX1-209ENST00000487284 SIL1Q9H173 461 aa17.39■□□□□ 0.37
CUX1-209ENST00000487284 SEC31BQ9NQW1 1179 aa17.39■□□□□ 0.37
CUX1-209ENST00000487284 COL11A2P13942 1736 aaPredicted RBP17.38■□□□□ 0.37
CUX1-209ENST00000487284 ANKRD18BA2A2Z9 1011 aa17.38■□□□□ 0.37
CUX1-209ENST00000487284 DDRGK1Q96HY6 314 aa17.38■□□□□ 0.37
CUX1-209ENST00000487284 EIF5BO60841 1220 aaKnown RBP17.37■□□□□ 0.37
CUX1-209ENST00000487284 MFAP1P55081 439 aaKnown RBP17.37■□□□□ 0.37
CUX1-209ENST00000487284 BRIP1Q9BX63 1249 aa17.37■□□□□ 0.37
CUX1-209ENST00000487284 LRP5O75197 1615 aa17.37■□□□□ 0.37
CUX1-209ENST00000487284 TTC41PQ6P2S7 1318 aa17.37■□□□□ 0.37
CUX1-209ENST00000487284 TAF7LQ5H9L4 462 aa17.36■□□□□ 0.37
CUX1-209ENST00000487284 TSHZ3Q63HK5 1081 aa17.36■□□□□ 0.37
CUX1-209ENST00000487284 PI4K2BQ8TCG2 481 aa17.36■□□□□ 0.37
CUX1-209ENST00000487284 KLRG2A4D1S0 409 aaPredicted RBP17.36■□□□□ 0.37
CUX1-209ENST00000487284 POLD1P28340 1107 aa17.36■□□□□ 0.37
CUX1-209ENST00000487284 CRY2Q49AN0 593 aa17.36■□□□□ 0.37
CUX1-209ENST00000487284 C10orf71Q711Q0 1435 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms