RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 CTSWP56202 376 aa17.15■□□□□ 0.34
CLK3-204ENST00000483723 KRT27Q7Z3Y8 459 aa17.15■□□□□ 0.34
CLK3-204ENST00000483723 CNTROBQ8N137 903 aa17.15■□□□□ 0.34
CLK3-204ENST00000483723 ZNF594Q96JF6 807 aaPredicted RBP17.15■□□□□ 0.34
CLK3-204ENST00000483723 ESYT1Q9BSJ8 1104 aa17.15■□□□□ 0.34
CLK3-204ENST00000483723 UTP14AQ9BVJ6 771 aaKnown RBP17.15■□□□□ 0.34
CLK3-204ENST00000483723 TLR7Q9NYK1 1049 aaKnown RBP17.15■□□□□ 0.34
CLK3-204ENST00000483723 ZNF652Q9Y2D9 606 aa17.15■□□□□ 0.34
CLK3-204ENST00000483723 SH3TC1Q8TE82 1336 aa17.14■□□□□ 0.33
CLK3-204ENST00000483723 REC8O95072 547 aa17.14■□□□□ 0.33
CLK3-204ENST00000483723 LRRC24Q50LG9 513 aa17.14■□□□□ 0.33
CLK3-204ENST00000483723 DBNLQ9UJU6 430 aaKnown RBP17.14■□□□□ 0.33
CLK3-204ENST00000483723 EPB41L2O43491 1005 aaKnown RBP17.13■□□□□ 0.33
CLK3-204ENST00000483723 RBM6P78332 1123 aaKnown RBP17.13■□□□□ 0.33
CLK3-204ENST00000483723 IFIT5Q13325 482 aaKnown RBP17.13■□□□□ 0.33
CLK3-204ENST00000483723 NARFQ9UHQ1 456 aa17.13■□□□□ 0.33
CLK3-204ENST00000483723 SCN7AQ01118 1682 aa17.13■□□□□ 0.33
CLK3-204ENST00000483723 NTSR2O95665 410 aa17.13■□□□□ 0.33
CLK3-204ENST00000483723 ATP5JP18859 108 aa17.13■□□□□ 0.33
CLK3-204ENST00000483723 EVI5LQ96CN4 794 aa17.13■□□□□ 0.33
CLK3-204ENST00000483723 PUS3Q9BZE2 481 aaKnown RBP17.13■□□□□ 0.33
CLK3-204ENST00000483723 NIP7Q9Y221 180 aaKnown RBP eCLIP17.13■□□□□ 0.33
CLK3-204ENST00000483723 LAMB2P55268 1798 aa17.12■□□□□ 0.33
CLK3-204ENST00000483723 DDX60Q8IY21 1712 aaKnown RBP17.12■□□□□ 0.33
CLK3-204ENST00000483723 RXRBP28702 533 aa17.12■□□□□ 0.33
CLK3-204ENST00000483723 BECN1Q14457 450 aa17.12■□□□□ 0.33
CLK3-204ENST00000483723 GREM2Q9H772 168 aa17.12■□□□□ 0.33
CLK3-204ENST00000483723 BCL2L12Q9HB09 334 aa17.12■□□□□ 0.33
CLK3-204ENST00000483723 C4BP0C0L5 1744 aa17.12■□□□□ 0.33
CLK3-204ENST00000483723 MAP4K4O95819 1239 aaPredicted RBP17.11■□□□□ 0.33
CLK3-204ENST00000483723 HSP90B1P14625 803 aaKnown RBP17.11■□□□□ 0.33
CLK3-204ENST00000483723 RIPOR2Q9Y4F9 1068 aa17.11■□□□□ 0.33
CLK3-204ENST00000483723 ANKRD18BA2A2Z9 1011 aa17.1■□□□□ 0.33
CLK3-204ENST00000483723 ITGA6P23229 1130 aa17.1■□□□□ 0.33
CLK3-204ENST00000483723 DBNDD2Q9BQY9 259 aa17.1■□□□□ 0.33
CLK3-204ENST00000483723 RTCBQ9Y3I0 505 aaKnown RBP17.1■□□□□ 0.33
CLK3-204ENST00000483723 SNX21Q969T3 373 aa17.1■□□□□ 0.33
CLK3-204ENST00000483723 TBC1D2Q9BYX2 928 aa17.1■□□□□ 0.33
CLK3-204ENST00000483723 CEP126Q9P2H0 1117 aa17.1■□□□□ 0.33
CLK3-204ENST00000483723 ZNF609O15014 1411 aa17.1■□□□□ 0.33
CLK3-204ENST00000483723 RTL9Q8NET4 1388 aa17.09■□□□□ 0.33
CLK3-204ENST00000483723 GNPATO15228 680 aa17.09■□□□□ 0.33
CLK3-204ENST00000483723 SLC4A3P48751 1232 aa17.09■□□□□ 0.33
CLK3-204ENST00000483723 BOLA2Q9H3K6 86 aa17.09■□□□□ 0.33
CLK3-204ENST00000483723 LRRC4BQ9NT99 713 aa17.09■□□□□ 0.33
CLK3-204ENST00000483723 SGSM2O43147 1006 aa17.08■□□□□ 0.32
CLK3-204ENST00000483723 SLC10A5Q5PT55 438 aa17.08■□□□□ 0.32
CLK3-204ENST00000483723 CCDC85AQ96PX6 553 aaPredicted RBP17.08■□□□□ 0.32
CLK3-204ENST00000483723 DAXXQ9UER7 740 aaPredicted RBP17.08■□□□□ 0.32
CLK3-204ENST00000483723 AKAP2Q9Y2D5 859 aa17.08■□□□□ 0.32
CLK3-204ENST00000483723 HCLS1P14317 486 aaPredicted RBP17.07■□□□□ 0.32
CLK3-204ENST00000483723 TIMM10P62072 90 aa17.07■□□□□ 0.32
CLK3-204ENST00000483723 TAF7LQ5H9L4 462 aa17.07■□□□□ 0.32
CLK3-204ENST00000483723 SLC27A3Q5K4L6 730 aa17.07■□□□□ 0.32
CLK3-204ENST00000483723 USPL1Q5W0Q7 1092 aa17.07■□□□□ 0.32
CLK3-204ENST00000483723 ARHGEF1Q92888 912 aaKnown RBP17.07■□□□□ 0.32
CLK3-204ENST00000483723 IL17RAQ96F46 866 aa17.07■□□□□ 0.32
CLK3-204ENST00000483723 LRP5O75197 1615 aa17.07■□□□□ 0.32
CLK3-204ENST00000483723 COL24A1Q17RW2 1714 aa17.07■□□□□ 0.32
CLK3-204ENST00000483723 LDHAL6AQ6ZMR3 332 aa17.07■□□□□ 0.32
CLK3-204ENST00000483723 AMIGO3Q86WK7 504 aa17.07■□□□□ 0.32
CLK3-204ENST00000483723 HAUS7Q99871 368 aa17.07■□□□□ 0.32
CLK3-204ENST00000483723 IL25Q9H293 177 aa17.07■□□□□ 0.32
CLK3-204ENST00000483723 A0A1B0GUL7 405 aa17.06■□□□□ 0.32
CLK3-204ENST00000483723 HIP1O00291 1037 aa17.06■□□□□ 0.32
CLK3-204ENST00000483723 TBC1D9BQ66K14 1250 aa17.06■□□□□ 0.32
CLK3-204ENST00000483723 SMIM5Q71RC9 77 aa17.06■□□□□ 0.32
CLK3-204ENST00000483723 TICAM2Q86XR7 235 aa17.06■□□□□ 0.32
CLK3-204ENST00000483723 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.06■□□□□ 0.32
CLK3-204ENST00000483723 SNRKQ9NRH2 765 aa17.06■□□□□ 0.32
CLK3-204ENST00000483723 C4AP0C0L4 1744 aa17.06■□□□□ 0.32
CLK3-204ENST00000483723 RIC1Q4ADV7 1423 aa17.06■□□□□ 0.32
CLK3-204ENST00000483723 ZPR1O75312 459 aa17.05■□□□□ 0.32
CLK3-204ENST00000483723 ADRA2BP18089 450 aa17.05■□□□□ 0.32
CLK3-204ENST00000483723 ERICH6Q7L0X2 663 aa17.05■□□□□ 0.32
CLK3-204ENST00000483723 VGLL2Q8N8G2 317 aa17.05■□□□□ 0.32
CLK3-204ENST00000483723 RUFY2Q8WXA3 655 aa17.05■□□□□ 0.32
CLK3-204ENST00000483723 NEUROD6Q96NK8 337 aa17.05■□□□□ 0.32
CLK3-204ENST00000483723 SRP68Q9UHB9 627 aaKnown RBP17.05■□□□□ 0.32
CLK3-204ENST00000483723 FAM177BA6PVY3 158 aa17.04■□□□□ 0.32
CLK3-204ENST00000483723 TRIM37O94972 964 aa17.04■□□□□ 0.32
CLK3-204ENST00000483723 HMGB2P26583 209 aaKnown RBP17.04■□□□□ 0.32
CLK3-204ENST00000483723 SF3B3Q15393 1217 aaKnown RBP17.04■□□□□ 0.32
CLK3-204ENST00000483723 CCDC152Q4G0S7 254 aa17.04■□□□□ 0.32
CLK3-204ENST00000483723 TRAPPC3LQ5T215 181 aa17.04■□□□□ 0.32
CLK3-204ENST00000483723 UBR3Q6ZT12 1888 aa17.04■□□□□ 0.32
CLK3-204ENST00000483723 RFX7Q2KHR2 1363 aa17.04■□□□□ 0.32
CLK3-204ENST00000483723 RABEP1Q15276 862 aa17.04■□□□□ 0.32
CLK3-204ENST00000483723 DIAPH3Q9NSV4 1193 aa17.04■□□□□ 0.32
CLK3-204ENST00000483723 ERFEQ4G0M1 354 aa17.03■□□□□ 0.32
CLK3-204ENST00000483723 NYXQ9GZU5 481 aa17.03■□□□□ 0.32
CLK3-204ENST00000483723 LSG1Q9H089 658 aaKnown RBP17.03■□□□□ 0.32
CLK3-204ENST00000483723 CNNM1Q9NRU3 951 aa17.03■□□□□ 0.32
CLK3-204ENST00000483723 PDE8BO95263 885 aa17.02■□□□□ 0.32
CLK3-204ENST00000483723 ANAPC15P60006 121 aa17.02■□□□□ 0.32
CLK3-204ENST00000483723 METTL24Q5JXM2 366 aa17.02■□□□□ 0.32
CLK3-204ENST00000483723 CWC27Q6UX04 472 aaKnown RBP17.02■□□□□ 0.32
CLK3-204ENST00000483723 PROM2Q8N271 834 aa17.02■□□□□ 0.32
CLK3-204ENST00000483723 XAGE2Q96GT9 111 aa17.02■□□□□ 0.32
CLK3-204ENST00000483723 SETDB2Q96T68 719 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 165.5 ms