RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 CACTINQ8WUQ7 758 aaKnown RBP15.69■□□□□ 0.1
USP40-214ENST00000483519 LEO1Q8WVC0 666 aaPredicted RBP15.69■□□□□ 0.1
USP40-214ENST00000483519 EYA1Q99502 592 aa15.69■□□□□ 0.1
USP40-214ENST00000483519 ECHDC1Q9NTX5 307 aa15.69■□□□□ 0.1
USP40-214ENST00000483519 HIP1O00291 1037 aa15.68■□□□□ 0.1
USP40-214ENST00000483519 TAF7Q15545 349 aaPredicted RBP15.68■□□□□ 0.1
USP40-214ENST00000483519 CREB3L3Q68CJ9 461 aa15.68■□□□□ 0.1
USP40-214ENST00000483519 KIF18AQ8NI77 898 aa15.68■□□□□ 0.1
USP40-214ENST00000483519 EVI5LQ96CN4 794 aa15.68■□□□□ 0.1
USP40-214ENST00000483519 RBM8AQ9Y5S9 174 aaKnown RBP15.68■□□□□ 0.1
USP40-214ENST00000483519 DTNBO60941 627 aa15.68■□□□□ 0.1
USP40-214ENST00000483519 FAM173BQ6P4H8 233 aa15.68■□□□□ 0.1
USP40-214ENST00000483519 ZNF397Q8NF99 534 aaPredicted RBP15.68■□□□□ 0.1
USP40-214ENST00000483519 BICD2Q8TD16 824 aa15.68■□□□□ 0.1
USP40-214ENST00000483519 RGPD8O14715 1765 aaPredicted RBP15.68■□□□□ 0.1
USP40-214ENST00000483519 GOLGA6L19H0YKK7 550 aa15.67■□□□□ 0.1
USP40-214ENST00000483519 KRT222Q8N1A0 295 aa15.67■□□□□ 0.1
USP40-214ENST00000483519 NGDNQ8NEJ9 315 aaKnown RBP15.67■□□□□ 0.1
USP40-214ENST00000483519 DNAJC25Q9H1X3 360 aa15.67■□□□□ 0.1
USP40-214ENST00000483519 PHAXQ9H814 394 aaKnown RBP15.67■□□□□ 0.1
USP40-214ENST00000483519 NBPF7P0C2Y1 421 aaPredicted RBP15.67■□□□□ 0.1
USP40-214ENST00000483519 AMPHP49418 695 aa15.67■□□□□ 0.1
USP40-214ENST00000483519 RNF20Q5VTR2 975 aa15.67■□□□□ 0.1
USP40-214ENST00000483519 SARM1Q6SZW1 724 aa15.67■□□□□ 0.1
USP40-214ENST00000483519 BLOC1S2Q6QNY1 142 aa15.67■□□□□ 0.1
USP40-214ENST00000483519 ZNF592Q92610 1267 aa15.67■□□□□ 0.1
USP40-214ENST00000483519 IFIT2P09913 472 aaKnown RBP15.66■□□□□ 0.1
USP40-214ENST00000483519 PSME1Q06323 249 aa15.66■□□□□ 0.1
USP40-214ENST00000483519 ERC1Q8IUD2 1116 aa15.66■□□□□ 0.1
USP40-214ENST00000483519 LRRC8AQ8IWT6 810 aa15.66■□□□□ 0.1
USP40-214ENST00000483519 NR1I2O75469 434 aa15.66■□□□□ 0.1
USP40-214ENST00000483519 RBM6P78332 1123 aaKnown RBP15.66■□□□□ 0.1
USP40-214ENST00000483519 PTPN14Q15678 1187 aa15.66■□□□□ 0.1
USP40-214ENST00000483519 MAP4K1Q92918 833 aa15.66■□□□□ 0.1
USP40-214ENST00000483519 MRFAP1L1Q96HT8 127 aa15.66■□□□□ 0.1
USP40-214ENST00000483519 ALDH8A1Q9H2A2 487 aaPredicted RBP15.66■□□□□ 0.1
USP40-214ENST00000483519 TFIP11Q9UBB9 837 aaKnown RBP15.66■□□□□ 0.1
USP40-214ENST00000483519 SLFN14P0C7P3 912 aa15.65■□□□□ 0.1
USP40-214ENST00000483519 CCDC144BQ3MJ40 725 aa15.65■□□□□ 0.1
USP40-214ENST00000483519 CCDC144CPQ8IYA2 1237 aa15.65■□□□□ 0.1
USP40-214ENST00000483519 DDX54Q8TDD1 881 aaKnown RBP15.65■□□□□ 0.1
USP40-214ENST00000483519 AHDC1Q5TGY3 1603 aaPredicted RBP15.65■□□□□ 0.1
USP40-214ENST00000483519 SLC27A2O14975 620 aa15.65■□□□□ 0.1
USP40-214ENST00000483519 GIGYF1O75420 1035 aaPredicted RBP15.65■□□□□ 0.1
USP40-214ENST00000483519 NAA30Q147X3 362 aaPredicted RBP15.65■□□□□ 0.1
USP40-214ENST00000483519 BEND3Q5T5X7 828 aa15.65■□□□□ 0.1
USP40-214ENST00000483519 LARP1Q6PKG0 1096 aaKnown RBP15.65■□□□□ 0.1
USP40-214ENST00000483519 DNAAF4Q8WXU2 420 aa15.65■□□□□ 0.1
USP40-214ENST00000483519 CCDC66A2RUB6 948 aa15.64■□□□□ 0.09
USP40-214ENST00000483519 MTX1Q13505 466 aa15.64■□□□□ 0.09
USP40-214ENST00000483519 IL17REQ8NFR9 667 aa15.64■□□□□ 0.09
USP40-214ENST00000483519 RPS6KB1P23443 525 aa15.64■□□□□ 0.09
USP40-214ENST00000483519 ERO1AQ96HE7 468 aa15.64■□□□□ 0.09
USP40-214ENST00000483519 PLEKHG2Q9H7P9 1386 aa15.64■□□□□ 0.09
USP40-214ENST00000483519 TERF2Q15554 542 aa15.63■□□□□ 0.09
USP40-214ENST00000483519 SLFNL1Q499Z3 407 aa15.63■□□□□ 0.09
USP40-214ENST00000483519 NYAP1Q6ZVC0 841 aa15.63■□□□□ 0.09
USP40-214ENST00000483519 NHSL1Q5SYE7 1610 aa15.63■□□□□ 0.09
USP40-214ENST00000483519 KIF2AO00139 706 aaPredicted RBP15.63■□□□□ 0.09
USP40-214ENST00000483519 CTAGE5O15320 804 aa15.63■□□□□ 0.09
USP40-214ENST00000483519 PGBD1Q96JS3 809 aa15.63■□□□□ 0.09
USP40-214ENST00000483519 SNRKQ9NRH2 765 aa15.63■□□□□ 0.09
USP40-214ENST00000483519 CFAP45Q9UL16 551 aa15.63■□□□□ 0.09
USP40-214ENST00000483519 SKILP12757 684 aa15.62■□□□□ 0.09
USP40-214ENST00000483519 STX1AQ16623 288 aa15.62■□□□□ 0.09
USP40-214ENST00000483519 KRT28Q7Z3Y7 464 aa15.62■□□□□ 0.09
USP40-214ENST00000483519 ZNF215Q9UL58 517 aaPredicted RBP15.62■□□□□ 0.09
USP40-214ENST00000483519 HDAC5Q9UQL6 1122 aa15.62■□□□□ 0.09
USP40-214ENST00000483519 HOXB7P09629 217 aa15.62■□□□□ 0.09
USP40-214ENST00000483519 FAM193AP78312 1265 aa15.62■□□□□ 0.09
USP40-214ENST00000483519 NMIQ13287 307 aaPredicted RBP15.62■□□□□ 0.09
USP40-214ENST00000483519 IQCB1Q15051 598 aa15.62■□□□□ 0.09
USP40-214ENST00000483519 KMT5BQ4FZB7 885 aa15.62■□□□□ 0.09
USP40-214ENST00000483519 HMG20BQ9P0W2 317 aa15.62■□□□□ 0.09
USP40-214ENST00000483519 PI4KAP2A4QPH2 592 aa15.61■□□□□ 0.09
USP40-214ENST00000483519 PI4KAP1Q8N8J0 262 aa15.61■□□□□ 0.09
USP40-214ENST00000483519 ZSCAN16Q9H4T2 348 aaPredicted RBP15.61■□□□□ 0.09
USP40-214ENST00000483519 SOS2Q07890 1332 aaPredicted RBP15.61■□□□□ 0.09
USP40-214ENST00000483519 CREBRFQ8IUR6 639 aa15.61■□□□□ 0.09
USP40-214ENST00000483519 LRRC59Q96AG4 307 aaKnown RBP15.61■□□□□ 0.09
USP40-214ENST00000483519 FAM227BQ96M60 508 aa15.61■□□□□ 0.09
USP40-214ENST00000483519 PHLPP1O60346 1717 aa15.61■□□□□ 0.09
USP40-214ENST00000483519 ABCC6O95255 1503 aa15.6■□□□□ 0.09
USP40-214ENST00000483519 BECN2A8MW95 431 aa15.6■□□□□ 0.09
USP40-214ENST00000483519 EIF2S2P20042 333 aaKnown RBP15.6■□□□□ 0.09
USP40-214ENST00000483519 TOB2Q14106 344 aaPredicted RBP15.6■□□□□ 0.09
USP40-214ENST00000483519 AACSQ86V21 672 aa15.6■□□□□ 0.09
USP40-214ENST00000483519 RESTQ13127 1097 aa15.6■□□□□ 0.09
USP40-214ENST00000483519 KCND1Q9NSA2 647 aa15.6■□□□□ 0.09
USP40-214ENST00000483519 CCDC69A6NI79 296 aa15.59■□□□□ 0.09
USP40-214ENST00000483519 USP27XA6NNY8 438 aa15.59■□□□□ 0.09
USP40-214ENST00000483519 SLU7O95391 586 aaKnown RBP15.59■□□□□ 0.09
USP40-214ENST00000483519 FAM53CQ9NYF3 392 aa15.59■□□□□ 0.09
USP40-214ENST00000483519 CHPF2Q9P2E5 772 aa15.59■□□□□ 0.09
USP40-214ENST00000483519 H3BQV1 296 aa15.59■□□□□ 0.09
USP40-214ENST00000483519 STK3Q13188 491 aa15.59■□□□□ 0.09
USP40-214ENST00000483519 IFFO2Q5TF58 517 aa15.59■□□□□ 0.09
USP40-214ENST00000483519 TCEANC2Q96MN5 208 aa15.59■□□□□ 0.09
USP40-214ENST00000483519 SLIT3O75094 1523 aa15.59■□□□□ 0.09
USP40-214ENST00000483519 HSPA1LP34931 641 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms