RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 SLC10A5Q5PT55 438 aa16.6■□□□□ 0.25
SKA3-206ENST00000475251 CIAPIN1Q6FI81 312 aa16.6■□□□□ 0.25
SKA3-206ENST00000475251 DPP8Q6V1X1 898 aaPredicted RBP16.6■□□□□ 0.25
SKA3-206ENST00000475251 SAPCD2Q86UD0 394 aa16.6■□□□□ 0.25
SKA3-206ENST00000475251 SLC34A2O95436 690 aa16.59■□□□□ 0.25
SKA3-206ENST00000475251 BCL2L13Q9BXK5 485 aa16.59■□□□□ 0.25
SKA3-206ENST00000475251 ABCC4O15439 1325 aa16.59■□□□□ 0.25
SKA3-206ENST00000475251 GMPSP49915 693 aaPredicted RBP16.58■□□□□ 0.24
SKA3-206ENST00000475251 BRPF1P55201 1214 aaPredicted RBP16.58■□□□□ 0.24
SKA3-206ENST00000475251 C3orf67Q6ZVT6 689 aa16.58■□□□□ 0.24
SKA3-206ENST00000475251 SP8Q8IXZ3 490 aa16.58■□□□□ 0.24
SKA3-206ENST00000475251 MPNDQ8N594 471 aa16.58■□□□□ 0.24
SKA3-206ENST00000475251 PLEKHF1Q96S99 279 aa16.58■□□□□ 0.24
SKA3-206ENST00000475251 PGAP2Q9UHJ9 254 aa16.58■□□□□ 0.24
SKA3-206ENST00000475251 AOC2O75106 756 aa16.57■□□□□ 0.24
SKA3-206ENST00000475251 RGS19P49795 217 aa16.57■□□□□ 0.24
SKA3-206ENST00000475251 KIAA2012Q0VF49 1180 aa16.57■□□□□ 0.24
SKA3-206ENST00000475251 CDC37L1Q7L3B6 337 aa16.57■□□□□ 0.24
SKA3-206ENST00000475251 TMC4Q7Z404 712 aa16.57■□□□□ 0.24
SKA3-206ENST00000475251 TSPYL4Q9UJ04 414 aa16.57■□□□□ 0.24
SKA3-206ENST00000475251 DDX46Q7L014 1031 aaKnown RBP16.56■□□□□ 0.24
SKA3-206ENST00000475251 THUMPD2Q9BTF0 503 aaKnown RBP16.56■□□□□ 0.24
SKA3-206ENST00000475251 GLIS2Q9BZE0 524 aaPredicted RBP16.56■□□□□ 0.24
SKA3-206ENST00000475251 BABAM1Q9NWV8 329 aa16.56■□□□□ 0.24
SKA3-206ENST00000475251 H7C1D1 291 aa16.55■□□□□ 0.24
SKA3-206ENST00000475251 EIF2S2P20042 333 aaKnown RBP16.55■□□□□ 0.24
SKA3-206ENST00000475251 NOGQ13253 232 aa16.55■□□□□ 0.24
SKA3-206ENST00000475251 ZNF408Q9H9D4 720 aa16.55■□□□□ 0.24
SKA3-206ENST00000475251 TSKSQ9UJT2 592 aa16.55■□□□□ 0.24
SKA3-206ENST00000475251 ANKRD36CQ5JPF3 1778 aa16.55■□□□□ 0.24
SKA3-206ENST00000475251 RAD17O75943 681 aa16.54■□□□□ 0.24
SKA3-206ENST00000475251 GRAPQ13588 217 aa16.54■□□□□ 0.24
SKA3-206ENST00000475251 LRP10Q7Z4F1 713 aa16.54■□□□□ 0.24
SKA3-206ENST00000475251 SLC51AQ86UW1 340 aa16.54■□□□□ 0.24
SKA3-206ENST00000475251 GRAPLQ8TC17 118 aaPredicted RBP16.54■□□□□ 0.24
SKA3-206ENST00000475251 SH3TC1Q8TE82 1336 aa16.53■□□□□ 0.24
SKA3-206ENST00000475251 LMOD3Q0VAK6 560 aa16.53■□□□□ 0.24
SKA3-206ENST00000475251 PDIA6Q15084 440 aa16.53■□□□□ 0.24
SKA3-206ENST00000475251 CFAP44Q96MT7 982 aa16.53■□□□□ 0.24
SKA3-206ENST00000475251 TRMT112Q9UI30 125 aaKnown RBP16.53■□□□□ 0.24
SKA3-206ENST00000475251 CNOT7Q9UIV1 285 aaKnown RBP16.53■□□□□ 0.24
SKA3-206ENST00000475251 LAMB2P55268 1798 aa16.52■□□□□ 0.24
SKA3-206ENST00000475251 NLRP10Q86W26 655 aa16.52■□□□□ 0.24
SKA3-206ENST00000475251 MCOLN1Q9GZU1 580 aa16.52■□□□□ 0.24
SKA3-206ENST00000475251 SPINK5Q9NQ38 1064 aaPredicted RBP16.52■□□□□ 0.24
SKA3-206ENST00000475251 HCLS1P14317 486 aaPredicted RBP16.51■□□□□ 0.23
SKA3-206ENST00000475251 HIRAP54198 1017 aaPredicted RBP16.51■□□□□ 0.23
SKA3-206ENST00000475251 TCIRG1Q13488 830 aa16.51■□□□□ 0.23
SKA3-206ENST00000475251 COPS6Q7L5N1 327 aa16.51■□□□□ 0.23
SKA3-206ENST00000475251 MICALL2Q8IY33 904 aa16.51■□□□□ 0.23
SKA3-206ENST00000475251 DPF2Q92785 391 aa16.51■□□□□ 0.23
SKA3-206ENST00000475251 HUNKP57058 714 aa16.5■□□□□ 0.23
SKA3-206ENST00000475251 DGKZQ13574 1117 aa16.5■□□□□ 0.23
SKA3-206ENST00000475251 PROSER3Q2NL68 480 aa16.5■□□□□ 0.23
SKA3-206ENST00000475251 TRPM4Q8TD43 1214 aa16.5■□□□□ 0.23
SKA3-206ENST00000475251 LRRC37AA6NMS7 1700 aa16.49■□□□□ 0.23
SKA3-206ENST00000475251 RPS12P25398 132 aaKnown RBP16.49■□□□□ 0.23
SKA3-206ENST00000475251 RIPK4P57078 832 aa16.49■□□□□ 0.23
SKA3-206ENST00000475251 AIMP1Q12904 312 aaKnown RBP16.49■□□□□ 0.23
SKA3-206ENST00000475251 WASHC4Q2M389 1173 aa16.49■□□□□ 0.23
SKA3-206ENST00000475251 XAGE3Q8WTP9 111 aa16.49■□□□□ 0.23
SKA3-206ENST00000475251 YDJCA8MPS7 323 aa16.48■□□□□ 0.23
SKA3-206ENST00000475251 ANXA1P04083 346 aa16.48■□□□□ 0.23
SKA3-206ENST00000475251 USP48Q86UV5 1035 aa16.48■□□□□ 0.23
SKA3-206ENST00000475251 C2orf69Q8N8R5 385 aa16.48■□□□□ 0.23
SKA3-206ENST00000475251 CCDC102AQ96A19 550 aa16.48■□□□□ 0.23
SKA3-206ENST00000475251 DCPSQ96C86 337 aaKnown RBP16.48■□□□□ 0.23
SKA3-206ENST00000475251 EYA3Q99504 573 aa16.48■□□□□ 0.23
SKA3-206ENST00000475251 SAGE1Q9NXZ1 904 aa16.48■□□□□ 0.23
SKA3-206ENST00000475251 RGMBQ6NW40 437 aa16.47■□□□□ 0.23
SKA3-206ENST00000475251 KRT26Q7Z3Y9 468 aa16.47■□□□□ 0.23
SKA3-206ENST00000475251 NSFL1CQ9UNZ2 370 aaKnown RBP16.47■□□□□ 0.23
SKA3-206ENST00000475251 CASP8AP2Q9UKL3 1982 aa16.47■□□□□ 0.23
SKA3-206ENST00000475251 DUOX1Q9NRD9 1551 aa16.47■□□□□ 0.23
SKA3-206ENST00000475251 PSMD14O00487 310 aa16.46■□□□□ 0.23
SKA3-206ENST00000475251 GBA2Q9HCG7 927 aaPredicted RBP16.46■□□□□ 0.23
SKA3-206ENST00000475251 ZBTB12Q9Y330 459 aaPredicted RBP16.46■□□□□ 0.23
SKA3-206ENST00000475251 DDX60Q8IY21 1712 aaKnown RBP16.45■□□□□ 0.22
SKA3-206ENST00000475251 C6orf229H3BNL8 230 aa16.45■□□□□ 0.22
SKA3-206ENST00000475251 SF3B3Q15393 1217 aaKnown RBP16.45■□□□□ 0.22
SKA3-206ENST00000475251 SAMD7Q7Z3H4 446 aa16.45■□□□□ 0.22
SKA3-206ENST00000475251 PLBD2Q8NHP8 589 aa16.45■□□□□ 0.22
SKA3-206ENST00000475251 NECTIN2Q92692 538 aa16.45■□□□□ 0.22
SKA3-206ENST00000475251 DBNDD1Q9H9R9 158 aa16.45■□□□□ 0.22
SKA3-206ENST00000475251 PCDH10Q9P2E7 1040 aa16.45■□□□□ 0.22
SKA3-206ENST00000475251 SHTN1A0MZ66 631 aa16.44■□□□□ 0.22
SKA3-206ENST00000475251 TBC1D10BQ4KMP7 808 aaPredicted RBP16.44■□□□□ 0.22
SKA3-206ENST00000475251 ECE2O60344 883 aa16.43■□□□□ 0.22
SKA3-206ENST00000475251 HOXB7P09629 217 aa16.43■□□□□ 0.22
SKA3-206ENST00000475251 HSP90B1P14625 803 aaKnown RBP16.43■□□□□ 0.22
SKA3-206ENST00000475251 TMPOP42166 694 aaKnown RBP16.43■□□□□ 0.22
SKA3-206ENST00000475251 ZNF157P51786 506 aaPredicted RBP16.43■□□□□ 0.22
SKA3-206ENST00000475251 ANKRD13DQ6ZTN6 518 aa16.43■□□□□ 0.22
SKA3-206ENST00000475251 SULF1Q8IWU6 871 aa16.43■□□□□ 0.22
SKA3-206ENST00000475251 REM2Q8IYK8 340 aaPredicted RBP16.43■□□□□ 0.22
SKA3-206ENST00000475251 TAF1P21675 1872 aa16.42■□□□□ 0.22
SKA3-206ENST00000475251 FAM155AB1AL88 458 aaPredicted RBP16.42■□□□□ 0.22
SKA3-206ENST00000475251 RIMBP2O15034 1052 aa16.42■□□□□ 0.22
SKA3-206ENST00000475251 HDGFL1Q5TGJ6 251 aa16.42■□□□□ 0.22
SKA3-206ENST00000475251 CELF1Q92879 486 aaKnown RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms