RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 DDX60Q8IY21 1712 aaKnown RBP18.07■□□□□ 0.48
VAMP4-203ENST00000474047 GCKRQ14397 625 aa18.06■□□□□ 0.48
VAMP4-203ENST00000474047 UBE3BQ7Z3V4 1068 aa18.06■□□□□ 0.48
VAMP4-203ENST00000474047 TRMT2AQ8IZ69 625 aaKnown RBP18.06■□□□□ 0.48
VAMP4-203ENST00000474047 CDHR2Q9BYE9 1310 aa18.06■□□□□ 0.48
VAMP4-203ENST00000474047 TMC4Q7Z404 712 aa18.06■□□□□ 0.48
VAMP4-203ENST00000474047 SP8Q8IXZ3 490 aa18.06■□□□□ 0.48
VAMP4-203ENST00000474047 CT47B1P0C2W7 299 aaPredicted RBP18.05■□□□□ 0.48
VAMP4-203ENST00000474047 MRPL50Q8N5N7 158 aaKnown RBP18.05■□□□□ 0.48
VAMP4-203ENST00000474047 SSH1Q8WYL5 1049 aa18.05■□□□□ 0.48
VAMP4-203ENST00000474047 CCDC85AQ96PX6 553 aaPredicted RBP18.05■□□□□ 0.48
VAMP4-203ENST00000474047 PSMD1Q99460 953 aa18.05■□□□□ 0.48
VAMP4-203ENST00000474047 BCL2L13Q9BXK5 485 aa18.05■□□□□ 0.48
VAMP4-203ENST00000474047 IARSP41252 1262 aaKnown RBP18.04■□□□□ 0.48
VAMP4-203ENST00000474047 ALDH1L2Q3SY69 923 aa18.04■□□□□ 0.48
VAMP4-203ENST00000474047 JDP2Q8WYK2 163 aa18.04■□□□□ 0.48
VAMP4-203ENST00000474047 SMC4Q9NTJ3 1288 aa18.04■□□□□ 0.48
VAMP4-203ENST00000474047 H7C1W4 665 aa18.03■□□□□ 0.48
VAMP4-203ENST00000474047 DPP8Q6V1X1 898 aaPredicted RBP18.03■□□□□ 0.48
VAMP4-203ENST00000474047 C16orf71Q8IYS4 520 aaPredicted RBP18.03■□□□□ 0.48
VAMP4-203ENST00000474047 MPNDQ8N594 471 aa18.03■□□□□ 0.48
VAMP4-203ENST00000474047 SUPT20HQ8NEM7 779 aa18.03■□□□□ 0.48
VAMP4-203ENST00000474047 GLTPD2A6NH11 291 aa18.03■□□□□ 0.48
VAMP4-203ENST00000474047 CTSWP56202 376 aa18.03■□□□□ 0.48
VAMP4-203ENST00000474047 RPS8P62241 208 aaKnown RBP18.03■□□□□ 0.48
VAMP4-203ENST00000474047 BEND3Q5T5X7 828 aa18.03■□□□□ 0.48
VAMP4-203ENST00000474047 CELF1Q92879 486 aaKnown RBP18.03■□□□□ 0.48
VAMP4-203ENST00000474047 NMRK2Q9NPI5 230 aa18.03■□□□□ 0.48
VAMP4-203ENST00000474047 PTPRCP08575 1304 aa18.02■□□□□ 0.48
VAMP4-203ENST00000474047 DICER1Q9UPY3 1922 aaKnown RBP18.02■□□□□ 0.48
VAMP4-203ENST00000474047 SRCIN1Q9C0H9 1055 aa18.02■□□□□ 0.48
VAMP4-203ENST00000474047 SEC31BQ9NQW1 1179 aa18.02■□□□□ 0.48
VAMP4-203ENST00000474047 C9orf78Q9NZ63 289 aaPredicted RBP18.02■□□□□ 0.48
VAMP4-203ENST00000474047 TAF1P21675 1872 aa18.02■□□□□ 0.48
VAMP4-203ENST00000474047 TIAM2Q8IVF5 1701 aa18.02■□□□□ 0.47
VAMP4-203ENST00000474047 LARGE2Q8N3Y3 721 aa18.01■□□□□ 0.47
VAMP4-203ENST00000474047 RRAGCQ9HB90 399 aa18.01■□□□□ 0.47
VAMP4-203ENST00000474047 SLC51AQ86UW1 340 aa18.01■□□□□ 0.47
VAMP4-203ENST00000474047 ANKRD18AQ8IVF6 992 aa18.01■□□□□ 0.47
VAMP4-203ENST00000474047 CDC5LQ99459 802 aaKnown RBP18.01■□□□□ 0.47
VAMP4-203ENST00000474047 PPIP5K2O43314 1243 aa18■□□□□ 0.47
VAMP4-203ENST00000474047 ALDH1L1O75891 902 aa18■□□□□ 0.47
VAMP4-203ENST00000474047 TTLL11Q8NHH1 800 aa18■□□□□ 0.47
VAMP4-203ENST00000474047 NSFL1CQ9UNZ2 370 aaKnown RBP18■□□□□ 0.47
VAMP4-203ENST00000474047 C1QTNF8P60827 252 aa17.99■□□□□ 0.47
VAMP4-203ENST00000474047 NIM1KQ8IY84 436 aa17.99■□□□□ 0.47
VAMP4-203ENST00000474047 KIF3CO14782 793 aa17.98■□□□□ 0.47
VAMP4-203ENST00000474047 VPS33BQ9H267 617 aa17.98■□□□□ 0.47
VAMP4-203ENST00000474047 C6orf229H3BNL8 230 aa17.98■□□□□ 0.47
VAMP4-203ENST00000474047 GRM8O00222 908 aa17.98■□□□□ 0.47
VAMP4-203ENST00000474047 VEGFAP15692 232 aaPredicted RBP17.98■□□□□ 0.47
VAMP4-203ENST00000474047 EIF6P56537 245 aaKnown RBP17.98■□□□□ 0.47
VAMP4-203ENST00000474047 AOC3Q16853 763 aa17.98■□□□□ 0.47
VAMP4-203ENST00000474047 PLA2G12BQ9BX93 195 aa17.98■□□□□ 0.47
VAMP4-203ENST00000474047 GREM2Q9H772 168 aa17.98■□□□□ 0.47
VAMP4-203ENST00000474047 ANKIB1Q9P2G1 1089 aa17.98■□□□□ 0.47
VAMP4-203ENST00000474047 CHMP3Q9Y3E7 222 aa17.98■□□□□ 0.47
VAMP4-203ENST00000474047 DDNO94850 711 aaPredicted RBP17.97■□□□□ 0.47
VAMP4-203ENST00000474047 SNED1Q8TER0 1413 aa17.97■□□□□ 0.47
VAMP4-203ENST00000474047 RTFDC1Q9BY42 306 aaPredicted RBP17.97■□□□□ 0.47
VAMP4-203ENST00000474047 MYH3P11055 1940 aa17.97■□□□□ 0.47
VAMP4-203ENST00000474047 CASP7P55210 303 aa17.96■□□□□ 0.47
VAMP4-203ENST00000474047 NOB1Q9ULX3 412 aaKnown RBP17.96■□□□□ 0.47
VAMP4-203ENST00000474047 IGHMBP2P38935 993 aaKnown RBP17.95■□□□□ 0.46
VAMP4-203ENST00000474047 RARSP54136 660 aaKnown RBP17.95■□□□□ 0.46
VAMP4-203ENST00000474047 GPSM2P81274 684 aa17.95■□□□□ 0.46
VAMP4-203ENST00000474047 FZD9O00144 591 aa17.95■□□□□ 0.46
VAMP4-203ENST00000474047 TOMM70O94826 608 aa17.95■□□□□ 0.46
VAMP4-203ENST00000474047 WASHC4Q2M389 1173 aa17.95■□□□□ 0.46
VAMP4-203ENST00000474047 EYA3Q99504 573 aa17.95■□□□□ 0.46
VAMP4-203ENST00000474047 ZBED9Q6R2W3 1325 aa17.94■□□□□ 0.46
VAMP4-203ENST00000474047 ANKRD18BA2A2Z9 1011 aa17.94■□□□□ 0.46
VAMP4-203ENST00000474047 ITGA6P23229 1130 aa17.94■□□□□ 0.46
VAMP4-203ENST00000474047 MPHOSPH8Q99549 860 aa17.94■□□□□ 0.46
VAMP4-203ENST00000474047 API5Q9BZZ5 524 aaKnown RBP17.94■□□□□ 0.46
VAMP4-203ENST00000474047 GJA3Q9Y6H8 435 aa17.94■□□□□ 0.46
VAMP4-203ENST00000474047 ZNF541Q9H0D2 1346 aa17.94■□□□□ 0.46
VAMP4-203ENST00000474047 RTL9Q8NET4 1388 aa17.94■□□□□ 0.46
VAMP4-203ENST00000474047 G3V3G9 751 aa17.93■□□□□ 0.46
VAMP4-203ENST00000474047 RIMBP2O15034 1052 aa17.93■□□□□ 0.46
VAMP4-203ENST00000474047 CSF1RP07333 972 aa17.93■□□□□ 0.46
VAMP4-203ENST00000474047 KIAA2012Q0VF49 1180 aa17.93■□□□□ 0.46
VAMP4-203ENST00000474047 IFIT5Q13325 482 aaKnown RBP17.93■□□□□ 0.46
VAMP4-203ENST00000474047 FAM161AQ3B820 660 aa17.93■□□□□ 0.46
VAMP4-203ENST00000474047 DCAF8Q5TAQ9 597 aa17.93■□□□□ 0.46
VAMP4-203ENST00000474047 BSDC1Q9NW68 430 aaPredicted RBP17.93■□□□□ 0.46
VAMP4-203ENST00000474047 GGA1Q9UJY5 639 aa17.93■□□□□ 0.46
VAMP4-203ENST00000474047 UFL1O94874 794 aa17.92■□□□□ 0.46
VAMP4-203ENST00000474047 LMBR1LQ6UX01 489 aa17.92■□□□□ 0.46
VAMP4-203ENST00000474047 ZNRF3Q9ULT6 936 aa17.92■□□□□ 0.46
VAMP4-203ENST00000474047 KIF16BQ96L93 1317 aa17.92■□□□□ 0.46
VAMP4-203ENST00000474047 IQCA1LA6NCM1 817 aa17.92■□□□□ 0.46
VAMP4-203ENST00000474047 IPO8O15397 1037 aaKnown RBP17.92■□□□□ 0.46
VAMP4-203ENST00000474047 CCT4P50991 539 aaKnown RBP17.92■□□□□ 0.46
VAMP4-203ENST00000474047 BRPF1P55201 1214 aaPredicted RBP17.92■□□□□ 0.46
VAMP4-203ENST00000474047 FOXO4P98177 505 aa17.92■□□□□ 0.46
VAMP4-203ENST00000474047 TAF7LQ5H9L4 462 aa17.92■□□□□ 0.46
VAMP4-203ENST00000474047 GPC2Q8N158 579 aa17.92■□□□□ 0.46
VAMP4-203ENST00000474047 ZC3H12CQ9C0D7 883 aaKnown RBP17.92■□□□□ 0.46
VAMP4-203ENST00000474047 POLLQ9UGP5 575 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms